Wall clock time and date at job start Tue Mar 31 2020 04:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48507 * 109.46887 * 240.00376 * 3 2 1 5 5 H 1.48498 * 109.46981 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47081 * 120.00641 * 3 2 1 7 7 C 1.38814 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99629 * 191.10591 * 7 2 1 9 9 N 1.36937 * 120.00455 * 11.09651 * 7 2 1 10 10 C 1.46931 * 120.62350 * 39.29324 * 9 7 2 11 11 C 1.53191 * 108.77265 * 233.87954 * 10 9 7 12 12 C 1.53037 * 109.31557 * 305.36901 * 11 10 9 13 13 C 1.53037 * 109.53733 * 61.36557 * 12 11 10 14 14 C 1.46922 * 120.63402 * 219.57595 * 9 7 2 15 15 H 1.09000 * 109.58322 * 246.04830 * 14 9 7 16 16 C 1.53000 * 109.58735 * 6.32726 * 14 9 7 17 17 N 1.46507 * 109.47117 * 296.97325 * 16 14 9 18 18 C 1.34775 * 119.99558 * 175.09725 * 17 16 14 19 19 O 1.21280 * 120.00400 * 0.02562 * 18 17 16 20 20 C 1.50707 * 119.99522 * 179.97438 * 18 17 16 21 21 H 1.08998 * 109.64446 * 300.42911 * 20 18 17 22 22 C 1.53875 * 109.64232 * 180.02562 * 20 18 17 23 23 C 1.55055 * 106.62054 * 192.96985 * 22 20 18 24 24 S 1.83287 * 102.56708 * 42.43346 * 23 22 20 25 25 O 1.42098 * 109.34966 * 90.18457 * 24 23 22 26 26 O 1.42092 * 109.35276 * 223.38687 * 24 23 22 27 27 C 1.54165 * 109.64170 * 60.72762 * 20 18 17 28 28 H 0.97001 * 119.99811 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.59139 * 353.67307 * 10 9 7 30 30 H 1.09003 * 109.58398 * 114.09931 * 10 9 7 31 31 H 1.09006 * 109.49552 * 185.41372 * 11 10 9 32 32 H 1.09002 * 109.49890 * 65.32456 * 11 10 9 33 33 H 1.08999 * 109.46098 * 301.34395 * 12 11 10 34 34 H 1.09003 * 109.45923 * 181.38866 * 12 11 10 35 35 H 1.09006 * 109.49785 * 178.68124 * 13 12 11 36 36 H 1.09001 * 109.49743 * 58.58954 * 13 12 11 37 37 H 1.09007 * 109.46957 * 56.97238 * 16 14 9 38 38 H 1.08999 * 109.47132 * 176.97234 * 16 14 9 39 39 H 0.96997 * 119.99787 * 355.09480 * 17 16 14 40 40 H 1.08997 * 110.03245 * 312.25916 * 22 20 18 41 41 H 1.09001 * 110.02748 * 73.67885 * 22 20 18 42 42 H 1.08999 * 110.78944 * 160.70443 * 23 22 20 43 43 H 1.09002 * 110.78838 * 284.16434 * 23 22 20 44 44 H 1.08999 * 110.31883 * 266.65791 * 27 20 18 45 45 H 1.09000 * 110.32414 * 28.86114 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0750 -1.2110 0.1796 9 7 1.3448 -2.3769 -0.2293 10 6 0.2750 -2.4478 -1.2340 11 6 -0.9860 -3.0127 -0.5725 12 6 -0.6542 -4.3527 0.0879 13 6 0.4059 -4.1408 1.1712 14 6 1.6827 -3.5888 0.5295 15 1 2.1080 -4.3340 -0.1427 16 6 2.6977 -3.2440 1.6212 17 7 3.9377 -2.7685 1.0026 18 6 4.9437 -2.3118 1.7744 19 8 4.8227 -2.2949 2.9810 20 6 6.2195 -1.8232 1.1380 21 1 6.6716 -2.6281 0.5586 22 6 7.1985 -1.3602 2.2312 23 6 8.3267 -0.5758 1.5129 24 16 7.3986 0.4333 0.2964 25 8 7.0530 1.6798 0.8846 26 8 8.0727 0.4009 -0.9541 27 6 5.9124 -0.6302 0.2111 28 1 -0.4850 0.8401 0.0004 29 1 0.0693 -1.4494 -1.6198 30 1 0.5832 -3.1009 -2.0504 31 1 -1.7579 -3.1605 -1.3278 32 1 -1.3448 -2.3137 0.1830 33 1 -0.2722 -5.0434 -0.6638 34 1 -1.5555 -4.7687 0.5382 35 1 0.6247 -5.0918 1.6570 36 1 0.0340 -3.4313 1.9103 37 1 2.2895 -2.4636 2.2635 38 1 2.9064 -4.1326 2.2170 39 1 4.0346 -2.7824 0.0375 40 1 6.6858 -0.7109 2.9409 41 1 7.6156 -2.2240 2.7489 42 1 8.8626 0.0619 2.2159 43 1 9.0111 -1.2577 1.0081 44 1 5.7519 -0.9758 -0.8101 45 1 5.0377 -0.0875 0.5698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024537061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:16 Heat of formation + Delta-G solvation = -86.925639 kcal Electronic energy + Delta-G solvation = -28192.199863 eV Core-core repulsion = 24337.469569 eV Total energy + Delta-G solvation = -3854.730293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.84264 -37.83100 -37.09263 -36.13491 -35.73279 -34.36695 -32.98322 -31.10735 -30.09087 -29.81882 -26.39278 -25.73891 -24.53223 -22.31851 -22.08051 -20.70980 -19.87703 -18.99472 -18.91529 -17.63434 -17.02979 -16.45618 -16.05442 -15.77860 -15.48139 -15.22273 -14.72843 -14.25517 -14.19899 -14.02617 -13.66220 -13.41822 -13.33851 -12.95072 -12.53090 -12.43712 -12.25931 -12.19776 -12.08926 -12.06651 -11.95179 -11.52830 -11.38167 -11.19184 -11.11539 -10.91815 -10.84522 -10.48480 -10.38604 -10.27562 -10.23704 -9.87827 -9.64102 -9.45953 -9.32720 -8.54112 -8.30757 -6.54157 -5.86241 -3.44697 -0.06621 2.38669 2.87893 3.30296 3.34359 3.39041 3.41837 3.56531 3.95012 4.26765 4.38155 4.38918 4.49584 4.68877 4.75319 5.09570 5.23738 5.30613 5.32580 5.39501 5.50784 5.52710 5.74325 5.76121 5.77727 5.86443 6.04148 6.07399 6.16956 6.33755 6.42489 6.55127 6.68387 6.76837 6.83660 6.89720 6.96976 7.07613 7.48234 7.62908 7.74252 7.92866 8.44352 8.56457 9.13897 9.72364 10.36335 11.18515 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.004684 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.447843 B = 5976.605732 C = 7145.754132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.020 3.980 3 Si 0.874 3.126 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.274 4.274 8 H 0.077 0.923 9 N -0.583 5.583 10 C 0.167 3.833 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.158 3.842 15 H 0.030 0.970 16 C 0.134 3.866 17 N -0.695 5.695 18 C 0.519 3.481 19 O -0.547 6.547 20 C -0.101 4.101 21 H 0.116 0.884 22 C -0.101 4.101 23 C -0.587 4.587 24 S 2.385 3.615 25 O -0.932 6.932 26 O -0.939 6.939 27 C -0.592 4.592 28 H 0.254 0.746 29 H 0.085 0.915 30 H -0.003 1.003 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.407 0.593 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.151 0.849 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.132 -7.269 0.516 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.182 4.182 3 Si 0.702 3.298 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.403 4.403 8 H 0.095 0.905 9 N -0.307 5.307 10 C 0.042 3.958 11 C -0.167 4.167 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.051 3.949 15 H 0.048 0.952 16 C 0.011 3.989 17 N -0.344 5.344 18 C 0.302 3.698 19 O -0.426 6.426 20 C -0.124 4.124 21 H 0.134 0.866 22 C -0.140 4.140 23 C -0.717 4.717 24 S 2.569 3.431 25 O -0.929 6.929 26 O -0.937 6.937 27 C -0.722 4.722 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.015 0.985 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.243 0.757 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.170 0.830 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.133 -6.248 0.892 12.798 hybrid contribution -0.095 0.260 -0.057 0.283 sum 11.038 -5.987 0.835 12.585 Atomic orbital electron populations 1.69929 1.05294 1.25583 1.52126 1.25347 0.95206 0.98310 0.99294 0.86850 0.79864 0.84330 0.78715 1.20489 1.21194 1.20006 1.19399 0.91562 0.83423 1.45963 0.90544 1.44125 1.41380 1.05652 1.39558 1.20739 0.86350 0.99780 0.88973 1.21900 0.98861 0.95856 1.00082 1.21384 0.97406 0.98120 0.97618 1.21940 0.97197 0.99227 0.98321 1.20894 0.92157 0.90637 0.91179 0.95207 1.21402 0.83063 0.98522 0.95941 1.46023 1.15053 1.62710 1.10654 1.19902 0.84493 0.78138 0.87230 1.90687 1.81736 1.55951 1.14182 1.21704 0.96113 0.97921 0.96629 0.86600 1.22048 0.92154 1.02422 0.97364 1.30644 1.09930 1.14540 1.16593 1.09204 0.79187 0.77721 0.77025 1.93643 1.82788 1.38110 1.78352 1.93604 1.72276 1.87492 1.40281 1.30670 1.21069 1.11498 1.08935 0.93557 0.89694 0.98506 0.94530 0.90555 0.93557 0.93927 0.93761 0.91765 0.90216 0.92861 0.75724 0.88207 0.87894 0.84262 0.84399 0.83041 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 11.12 55.49 0.62 -23.30 16 2 C 0.02 0.50 5.02 -17.43 -0.09 0.42 16 3 Si 0.87 20.67 29.57 -169.99 -5.03 15.64 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.27 -6.48 7.85 -15.06 -0.12 -6.60 16 8 H 0.08 1.67 4.41 -52.49 -0.23 1.44 16 9 N -0.58 -12.68 2.93 -164.78 -0.48 -13.16 16 10 C 0.17 3.63 5.62 -3.71 -0.02 3.61 16 11 C -0.13 -2.54 6.06 -26.61 -0.16 -2.70 16 12 C -0.11 -1.84 5.88 -26.69 -0.16 -2.00 16 13 C -0.13 -2.22 5.37 -26.62 -0.14 -2.36 16 14 C 0.16 2.90 2.97 -67.60 -0.20 2.70 16 15 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 16 C 0.13 2.38 4.55 -4.04 -0.02 2.37 16 17 N -0.69 -11.06 3.23 -60.29 -0.19 -11.26 16 18 C 0.52 8.05 6.98 -10.98 -0.08 7.97 16 19 O -0.55 -10.32 15.80 5.56 0.09 -10.23 16 20 C -0.10 -1.11 2.94 -90.70 -0.27 -1.38 16 21 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 22 C -0.10 -0.99 5.27 -25.19 -0.13 -1.12 16 23 C -0.59 -4.59 7.31 38.24 0.28 -4.31 16 24 S 2.39 28.30 6.11 -107.50 -0.66 27.64 16 25 O -0.93 -15.15 18.15 -57.71 -1.05 -16.20 16 26 O -0.94 -13.39 18.14 -57.71 -1.05 -14.44 16 27 C -0.59 -7.13 6.59 37.77 0.25 -6.88 16 28 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.08 2.11 6.08 -51.93 -0.32 1.79 16 30 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.75 7.85 -51.93 -0.41 1.35 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.71 7.81 -51.93 -0.41 1.30 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.41 5.97 7.47 -40.82 -0.30 5.67 16 40 H 0.10 1.14 7.72 -51.93 -0.40 0.74 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.14 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.15 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.15 2.21 7.48 -51.93 -0.39 1.82 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -33.35 361.76 -10.24 -43.59 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.09 Total: 6.55 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.86 Total: -10.29 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.06 Total: -47.72 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -2.01 Total: -40.87 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: 28.30 SS G_CDS: -0.66 Total: 27.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.35 -10.24 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024537061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.333 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds