Wall clock time and date at job start Tue Mar 31 2020 04:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99789 * 2 1 4 4 H 1.48507 * 109.47134 * 269.99888 * 3 2 1 5 5 H 1.48495 * 109.47132 * 30.00204 * 3 2 1 6 6 H 1.48500 * 109.47385 * 150.00103 * 3 2 1 7 7 C 1.38812 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00180 * 163.59254 * 7 2 1 9 9 N 1.36944 * 119.99678 * 343.58627 * 7 2 1 10 10 C 1.46953 * 120.65431 * 329.52887 * 9 7 2 11 11 C 1.53196 * 108.88632 * 233.53395 * 10 9 7 12 12 C 1.53041 * 109.30998 * 305.44069 * 11 10 9 13 13 C 1.53044 * 109.53699 * 61.36513 * 12 11 10 14 14 C 1.46919 * 120.62606 * 149.70334 * 9 7 2 15 15 H 1.09007 * 109.58986 * 246.32053 * 14 9 7 16 16 C 1.53003 * 109.59109 * 6.60826 * 14 9 7 17 17 N 1.46496 * 109.46923 * 299.32583 * 16 14 9 18 18 C 1.34777 * 120.00254 * 180.02562 * 17 16 14 19 19 O 1.21281 * 119.99731 * 359.97438 * 18 17 16 20 20 C 1.50694 * 120.00161 * 179.97438 * 18 17 16 21 21 H 1.08997 * 110.28566 * 337.11382 * 20 18 17 22 22 C 1.54168 * 110.31965 * 214.99405 * 20 18 17 23 23 C 1.53871 * 108.59833 * 213.15472 * 22 20 18 24 24 C 1.54736 * 106.77792 * 47.20838 * 23 22 20 25 25 S 1.82924 * 110.40550 * 99.28615 * 20 18 17 26 26 O 1.42100 * 109.35082 * 234.46912 * 25 20 18 27 27 O 1.42106 * 109.35098 * 7.53453 * 25 20 18 28 28 H 0.97001 * 120.00285 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47193 * 113.74733 * 10 9 7 30 30 H 1.09001 * 109.71401 * 353.45925 * 10 9 7 31 31 H 1.09000 * 109.50373 * 185.49379 * 11 10 9 32 32 H 1.08996 * 109.49793 * 65.38847 * 11 10 9 33 33 H 1.08995 * 109.46246 * 301.34649 * 12 11 10 34 34 H 1.09005 * 109.44942 * 181.37616 * 12 11 10 35 35 H 1.09001 * 109.49783 * 178.67809 * 13 12 11 36 36 H 1.09000 * 109.52258 * 58.60412 * 13 12 11 37 37 H 1.08997 * 109.47073 * 179.32703 * 16 14 9 38 38 H 1.08994 * 109.47073 * 59.32316 * 16 14 9 39 39 H 0.97002 * 120.00048 * 359.97438 * 17 16 14 40 40 H 1.08995 * 109.64621 * 332.94536 * 22 20 18 41 41 H 1.09004 * 109.64389 * 93.36579 * 22 20 18 42 42 H 1.09001 * 110.03158 * 166.40952 * 23 22 20 43 43 H 1.09003 * 110.02574 * 287.82513 * 23 22 20 44 44 H 1.09000 * 110.81347 * 199.26455 * 24 23 22 45 45 H 1.09008 * 110.98051 * 75.84683 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0572 -1.2210 -0.2647 9 7 1.3674 -2.3641 0.3341 10 6 0.2482 -2.3537 1.2863 11 6 0.5367 -3.3635 2.4016 12 6 0.8224 -4.7335 1.7824 13 6 2.0573 -4.6412 0.8831 14 6 1.7861 -3.6458 -0.2493 15 1 0.9944 -4.0307 -0.8923 16 6 3.0610 -3.4435 -1.0707 17 7 2.7982 -2.4933 -2.1543 18 6 3.7827 -2.1606 -3.0125 19 8 4.8864 -2.6475 -2.8873 20 6 3.5121 -1.1836 -4.1274 21 1 2.4465 -1.1551 -4.3547 22 6 4.3175 -1.5691 -5.3842 23 6 4.7108 -0.2815 -6.1292 24 6 5.2782 0.6923 -5.0689 25 16 4.1093 0.4845 -3.6726 26 8 3.0461 1.4178 -3.8057 27 8 4.8359 0.4085 -2.4537 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6706 -2.6319 0.7701 30 1 0.1392 -1.3573 1.7148 31 1 -0.3289 -3.4354 3.0602 32 1 1.4039 -3.0351 2.9743 33 1 -0.0356 -5.0502 1.1895 34 1 1.0039 -5.4594 2.5751 35 1 2.2741 -5.6224 0.4609 36 1 2.9106 -4.3011 1.4699 37 1 3.3765 -4.3977 -1.4927 38 1 3.8493 -3.0523 -0.4276 39 1 1.9153 -2.1042 -2.2546 40 1 5.2160 -2.1121 -5.0914 41 1 3.7059 -2.1958 -6.0334 42 1 5.4732 -0.5006 -6.8767 43 1 3.8341 0.1561 -6.6067 44 1 5.2624 1.7181 -5.4373 45 1 6.2875 0.4041 -4.7748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024809070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:39 Heat of formation + Delta-G solvation = -84.544516 kcal Electronic energy + Delta-G solvation = -28649.899944 eV Core-core repulsion = 24795.272904 eV Total energy + Delta-G solvation = -3854.627040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -39.56026 -37.83562 -36.87673 -36.12745 -35.68057 -34.24249 -33.03811 -31.23684 -30.07219 -29.83638 -26.42689 -25.50275 -24.41908 -22.16859 -21.72714 -20.75913 -20.25460 -19.14861 -18.63129 -17.41298 -17.03749 -16.44470 -16.14973 -15.55992 -15.45500 -14.99619 -14.51618 -14.08734 -14.01235 -13.90855 -13.69872 -13.58315 -13.37685 -12.86109 -12.56435 -12.42648 -12.33442 -12.08108 -11.98481 -11.90608 -11.79941 -11.68607 -11.21010 -11.14508 -10.92962 -10.67414 -10.52853 -10.45694 -10.26580 -10.25767 -10.08968 -9.94585 -9.68776 -9.47772 -9.29856 -8.57536 -8.29246 -6.64894 -5.82007 -3.26725 0.00813 2.51708 3.05130 3.40410 3.47359 3.56831 3.64559 3.74151 4.11345 4.32149 4.46123 4.53385 4.57404 4.81626 4.86109 5.16731 5.23412 5.34888 5.36526 5.39979 5.49639 5.56192 5.63821 5.67827 5.69183 5.90020 5.96024 6.03474 6.12391 6.26934 6.35472 6.41735 6.58974 6.71146 6.73402 6.84526 6.94639 7.05479 7.38544 7.64628 7.86531 8.04188 8.42991 8.62657 9.19825 9.81352 10.38258 11.24682 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.005498 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.933465 B = 5091.812708 C = 6417.559641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.015 3.985 3 Si 0.862 3.138 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.263 4.263 8 H 0.074 0.926 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.132 3.868 17 N -0.683 5.683 18 C 0.537 3.463 19 O -0.541 6.541 20 C -0.591 4.591 21 H 0.158 0.842 22 C -0.102 4.102 23 C -0.119 4.119 24 C -0.595 4.595 25 S 2.390 3.610 26 O -0.916 6.916 27 O -0.907 6.907 28 H 0.255 0.745 29 H 0.019 0.981 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.416 0.584 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.137 0.863 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 -4.663 -10.514 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.185 4.185 3 Si 0.690 3.310 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.392 4.392 8 H 0.091 0.909 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.144 4.144 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.008 3.992 17 N -0.334 5.334 18 C 0.319 3.681 19 O -0.420 6.420 20 C -0.701 4.701 21 H 0.176 0.824 22 C -0.141 4.141 23 C -0.158 4.158 24 C -0.725 4.725 25 S 2.569 3.431 26 O -0.913 6.913 27 O -0.904 6.904 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.255 0.745 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.155 0.845 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.769 -4.282 -9.660 12.039 hybrid contribution -0.010 0.713 -0.578 0.918 sum 5.759 -3.569 -10.239 12.277 Atomic orbital electron populations 1.70013 1.05173 1.25734 1.52937 1.24989 0.95102 0.98096 1.00349 0.86889 0.79909 0.84363 0.79875 1.18944 1.21455 1.19735 1.19263 0.92973 0.84323 1.42688 0.90853 1.44065 1.38155 1.01308 1.47657 1.20742 0.88791 0.97753 0.87919 1.22192 1.00095 0.96435 0.99637 1.21356 0.97640 0.97374 0.98068 1.21940 0.98411 0.98218 0.98142 1.20732 0.93212 0.88624 0.92154 0.95037 1.21401 0.98818 0.90931 0.88000 1.45988 1.14293 1.44734 1.28344 1.18783 0.85284 0.82248 0.81794 1.90652 1.22883 1.54734 1.73731 1.30608 1.12545 1.21911 1.05012 0.82425 1.21954 1.01139 0.98526 0.92477 1.22163 1.02368 0.93424 0.97811 1.30668 1.16089 1.08269 1.17432 1.09504 0.78048 0.77630 0.77958 1.93670 1.53428 1.57308 1.86896 1.93667 1.71908 1.85347 1.39444 0.93508 0.96336 0.89926 0.93521 0.92766 0.92891 0.93706 0.93023 0.91973 0.92275 0.90928 0.74549 0.87987 0.88738 0.88214 0.89431 0.84518 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.06 11.34 55.49 0.63 -24.43 16 2 C 0.01 0.40 4.91 -17.43 -0.09 0.32 16 3 Si 0.86 22.65 29.58 -169.99 -5.03 17.62 16 4 H -0.26 -6.97 6.37 56.52 0.36 -6.61 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 6 H -0.27 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.26 -6.84 7.02 -15.06 -0.11 -6.95 16 8 H 0.07 1.99 5.83 -52.49 -0.31 1.68 16 9 N -0.59 -13.65 2.98 -164.75 -0.49 -14.14 16 10 C 0.17 3.95 5.28 -3.69 -0.02 3.93 16 11 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 12 C -0.11 -1.74 5.88 -26.69 -0.16 -1.90 16 13 C -0.13 -2.13 5.37 -26.61 -0.14 -2.28 16 14 C 0.16 3.09 3.00 -67.60 -0.20 2.88 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.50 4.42 -4.04 -0.02 2.49 16 17 N -0.68 -13.12 3.85 -60.30 -0.23 -13.35 16 18 C 0.54 9.86 6.31 -10.99 -0.07 9.79 16 19 O -0.54 -10.98 15.85 5.56 0.09 -10.90 16 20 C -0.59 -8.59 3.60 -27.28 -0.10 -8.68 16 21 H 0.16 1.95 8.11 -51.93 -0.42 1.53 16 22 C -0.10 -1.07 5.92 -25.67 -0.15 -1.22 16 23 C -0.12 -1.00 6.45 -25.36 -0.16 -1.16 16 24 C -0.60 -6.21 7.30 38.07 0.28 -5.93 16 25 S 2.39 40.13 5.94 -107.50 -0.64 39.49 16 26 O -0.92 -18.08 17.42 -57.73 -1.01 -19.09 16 27 O -0.91 -19.25 17.29 -57.73 -1.00 -20.25 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 2.14 6.24 -51.93 -0.32 1.81 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.53 7.40 -51.93 -0.38 1.15 16 39 H 0.42 8.24 7.41 -40.82 -0.30 7.94 16 40 H 0.10 1.16 6.96 -51.93 -0.36 0.80 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.14 1.30 8.14 -51.92 -0.42 0.87 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -33.95 360.63 -10.54 -44.48 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.19 Total: 6.70 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -1.10 Total: -11.58 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.09 Total: -51.92 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -1.92 Total: -50.24 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Atomic # 16 Polarization: 40.13 SS G_CDS: -0.64 Total: 39.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.95 -10.54 -44.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024809070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.061 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds