Wall clock time and date at job start Tue Mar 31 2020 04:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47107 * 356.73984 * 3 2 1 5 5 H 1.48497 * 109.47057 * 116.74287 * 3 2 1 6 6 H 1.48503 * 109.46884 * 236.74288 * 3 2 1 7 7 C 1.38804 * 120.00095 * 180.27382 * 2 1 3 8 8 H 1.07996 * 120.00151 * 153.29628 * 7 2 1 9 9 N 1.36945 * 120.00144 * 333.29433 * 7 2 1 10 10 C 1.46928 * 120.62365 * 320.79947 * 9 7 2 11 11 C 1.53627 * 108.53988 * 126.37173 * 10 9 7 12 12 C 1.53037 * 109.24419 * 54.84800 * 11 10 9 13 13 C 1.53040 * 109.54027 * 298.51448 * 12 11 10 14 14 C 1.46926 * 120.63232 * 141.07710 * 9 7 2 15 15 H 1.09000 * 109.58063 * 113.79900 * 14 9 7 16 16 C 1.53004 * 109.58509 * 353.51783 * 14 9 7 17 17 N 1.46501 * 109.47008 * 63.87465 * 16 14 9 18 18 C 1.34776 * 119.99519 * 183.96451 * 17 16 14 19 19 O 1.21282 * 120.00302 * 5.01485 * 18 17 16 20 20 C 1.50701 * 119.99839 * 185.01339 * 18 17 16 21 21 H 1.09005 * 110.28237 * 21.12547 * 20 18 17 22 22 C 1.54167 * 110.31752 * 143.23337 * 20 18 17 23 23 C 1.53880 * 108.70182 * 146.81153 * 22 20 18 24 24 C 1.55045 * 106.62513 * 312.82207 * 23 22 20 25 25 S 1.82917 * 110.32091 * 259.00593 * 20 18 17 26 26 O 1.42095 * 109.35013 * 352.37393 * 25 20 18 27 27 O 1.42102 * 109.35061 * 125.57283 * 25 20 18 28 28 H 0.97003 * 119.99581 * 176.53092 * 1 2 3 29 29 H 1.09000 * 109.58254 * 246.19612 * 10 9 7 30 30 H 1.08992 * 109.59147 * 6.62732 * 10 9 7 31 31 H 1.08997 * 109.63281 * 294.85815 * 11 10 9 32 32 H 1.09002 * 109.45407 * 174.73875 * 11 10 9 33 33 H 1.09005 * 109.45887 * 178.49012 * 12 11 10 34 34 H 1.09004 * 109.45994 * 58.53307 * 12 11 10 35 35 H 1.08996 * 109.49540 * 301.41106 * 13 12 11 36 36 H 1.09002 * 109.52526 * 181.33494 * 13 12 11 37 37 H 1.09000 * 109.47071 * 183.87561 * 16 14 9 38 38 H 1.08997 * 109.46668 * 303.87427 * 16 14 9 39 39 H 0.97000 * 120.00192 * 3.96292 * 17 16 14 40 40 H 1.08994 * 109.65182 * 266.66527 * 22 20 18 41 41 H 1.08994 * 109.64660 * 26.96606 * 22 20 18 42 42 H 1.09003 * 110.02804 * 72.11447 * 23 22 20 43 43 H 1.08998 * 110.02827 * 193.47991 * 23 22 20 44 44 H 1.08999 * 110.78846 * 160.69909 * 24 23 22 45 45 H 1.08996 * 110.79143 * 283.97141 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2872 2.7453 -0.0796 5 1 3.0433 1.7315 1.2503 6 1 3.1626 1.6625 -1.1708 7 6 2.0103 -1.2021 -0.0057 8 1 3.0039 -1.2499 -0.4263 9 7 1.4352 -2.3273 0.5219 10 6 0.6286 -2.2512 1.7476 11 6 -0.7419 -2.8880 1.4708 12 6 -0.5398 -4.3086 0.9388 13 6 0.2411 -4.2565 -0.3763 14 6 1.6180 -3.6345 -0.1236 15 1 2.1992 -4.2860 0.5290 16 6 2.3534 -3.4517 -1.4528 17 7 3.6981 -2.9288 -1.1991 18 6 4.5040 -2.6124 -2.2320 19 8 4.0855 -2.6738 -3.3687 20 6 5.9252 -2.1821 -1.9745 21 1 6.2524 -2.5266 -0.9935 22 6 6.8578 -2.7304 -3.0729 23 6 7.9883 -1.7144 -3.3127 24 6 7.3155 -0.3229 -3.4356 25 16 6.0686 -0.3622 -2.0891 26 8 4.8434 0.1776 -2.5653 27 8 6.6487 0.1406 -0.8933 28 1 -0.4850 -0.8386 -0.0508 29 1 1.1307 -2.7924 2.5495 30 1 0.4971 -1.2080 2.0344 31 1 -1.2783 -2.2950 0.7301 32 1 -1.3187 -2.9241 2.3950 33 1 -1.5106 -4.7734 0.7666 34 1 0.0183 -4.8941 1.6695 35 1 -0.3046 -3.6506 -1.0996 36 1 0.3644 -5.2665 -0.7671 37 1 2.4272 -4.4125 -1.9623 38 1 1.8027 -2.7498 -2.0791 39 1 4.0085 -2.8104 -0.2878 40 1 7.2821 -3.6818 -2.7522 41 1 6.2936 -2.8749 -3.9941 42 1 8.6810 -1.7211 -2.4711 43 1 8.5184 -1.9562 -4.2339 44 1 8.0404 0.4735 -3.2675 45 1 6.8368 -0.2092 -4.4082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024809071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:43 Heat of formation + Delta-G solvation = -83.002246 kcal Electronic energy + Delta-G solvation = -28557.238198 eV Core-core repulsion = 24702.678036 eV Total energy + Delta-G solvation = -3854.560162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -39.66198 -37.94813 -36.97015 -36.20577 -35.74608 -34.37671 -33.04333 -31.30850 -30.10255 -29.77288 -26.48396 -25.44291 -24.18497 -22.07998 -21.80871 -20.80049 -20.45401 -19.37079 -18.74326 -17.62651 -17.12951 -16.62663 -16.28598 -15.58477 -15.30069 -15.07723 -14.53913 -14.40700 -14.07092 -13.83509 -13.70160 -13.58492 -13.41297 -12.97265 -12.65451 -12.44745 -12.39902 -12.24456 -12.11560 -11.98760 -11.88236 -11.62108 -11.28172 -11.21426 -10.82132 -10.76422 -10.58577 -10.34899 -10.32555 -10.26866 -9.94689 -9.85629 -9.66053 -9.64531 -9.13532 -8.39369 -8.18899 -6.71318 -5.96331 -3.28772 -0.06969 2.42433 2.97030 3.29675 3.61580 3.62923 3.73244 3.84571 4.03261 4.24183 4.38702 4.49680 4.67308 4.71534 4.77859 5.05854 5.17745 5.28434 5.34496 5.38526 5.48219 5.50102 5.60514 5.63497 5.64681 5.83312 5.94805 5.99160 6.07441 6.22992 6.30972 6.39655 6.59087 6.60179 6.69693 6.74562 6.88933 6.98313 7.15456 7.25393 7.87133 8.18329 8.51068 8.71978 9.18330 9.88530 10.37538 11.27052 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.005236 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.579520 B = 5346.679125 C = 6655.690775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 1.025 2.975 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.373 4.373 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.152 3.848 11 C -0.138 4.138 12 C -0.105 4.105 13 C -0.130 4.130 14 C 0.157 3.843 15 H 0.031 0.969 16 C 0.137 3.863 17 N -0.689 5.689 18 C 0.537 3.463 19 O -0.529 6.529 20 C -0.594 4.594 21 H 0.155 0.845 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.590 4.590 25 S 2.387 3.613 26 O -0.893 6.893 27 O -0.926 6.926 28 H 0.272 0.728 29 H 0.011 0.989 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.406 0.594 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.137 0.863 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.814 -7.941 -3.555 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.206 4.206 3 Si 0.853 3.147 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.502 4.502 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.027 3.973 11 C -0.178 4.178 12 C -0.143 4.143 13 C -0.170 4.170 14 C 0.050 3.950 15 H 0.049 0.951 16 C 0.014 3.986 17 N -0.339 5.339 18 C 0.319 3.681 19 O -0.407 6.407 20 C -0.703 4.703 21 H 0.173 0.827 22 C -0.140 4.140 23 C -0.157 4.157 24 C -0.720 4.720 25 S 2.566 3.434 26 O -0.890 6.890 27 O -0.922 6.922 28 H 0.084 0.916 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.242 0.758 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.155 0.845 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.876 -5.629 -3.825 14.564 hybrid contribution 0.593 -2.218 0.102 2.298 sum 13.469 -7.847 -3.723 16.027 Atomic orbital electron populations 1.70817 1.06918 1.30640 1.45768 1.25818 0.96320 1.01637 0.96802 0.84128 0.76164 0.76683 0.77726 1.21079 1.21797 1.18971 1.20025 0.99175 0.87912 1.43078 0.91833 1.44241 1.60642 1.02662 1.24085 1.20958 0.88921 0.99698 0.87751 1.22142 0.99758 0.95886 0.99964 1.21348 0.98626 0.97418 0.96932 1.21983 0.98166 0.99154 0.97711 1.20918 0.93108 0.89561 0.91368 0.95142 1.21380 0.81563 0.97479 0.98169 1.45950 1.15450 1.63703 1.08827 1.18774 0.84528 0.78928 0.85859 1.90682 1.75019 1.53268 1.21685 1.30642 1.02168 1.28065 1.09432 0.82712 1.21936 0.94419 0.99875 0.97787 1.22212 0.98130 0.90287 1.05052 1.30722 1.16909 1.05142 1.19230 1.09596 0.77868 0.77784 0.78170 1.93764 1.40381 1.74000 1.80853 1.93632 1.79074 1.75980 1.43558 0.91567 0.97061 0.90990 0.91366 0.93588 0.93512 0.93155 0.91843 0.93365 0.92739 0.89881 0.75761 0.88837 0.88001 0.89509 0.88193 0.84520 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 12.74 55.49 0.71 -26.24 16 2 C 0.00 0.00 4.60 -17.43 -0.08 -0.08 16 3 Si 1.02 26.62 29.99 -169.99 -5.10 21.52 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.92 6.77 56.52 0.38 -6.54 16 7 C -0.37 -9.90 7.71 -15.06 -0.12 -10.02 16 8 H 0.06 1.66 4.98 -52.49 -0.26 1.39 16 9 N -0.59 -13.76 2.65 -164.52 -0.44 -14.19 16 10 C 0.15 3.40 5.56 -3.48 -0.02 3.38 16 11 C -0.14 -2.72 5.94 -26.39 -0.16 -2.88 16 12 C -0.11 -1.80 5.88 -26.69 -0.16 -1.96 16 13 C -0.13 -2.33 5.38 -26.62 -0.14 -2.47 16 14 C 0.16 3.06 2.95 -67.60 -0.20 2.86 16 15 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 16 C 0.14 2.68 4.56 -4.04 -0.02 2.66 16 17 N -0.69 -12.67 3.34 -60.29 -0.20 -12.88 16 18 C 0.54 9.57 6.27 -10.99 -0.07 9.50 16 19 O -0.53 -10.92 15.89 5.56 0.09 -10.83 16 20 C -0.59 -7.76 3.60 -27.27 -0.10 -7.85 16 21 H 0.16 1.55 8.12 -51.93 -0.42 1.13 16 22 C -0.10 -0.96 5.91 -25.66 -0.15 -1.11 16 23 C -0.12 -0.87 6.48 -25.19 -0.16 -1.03 16 24 C -0.59 -5.55 7.32 38.24 0.28 -5.27 16 25 S 2.39 36.39 5.96 -107.50 -0.64 35.75 16 26 O -0.89 -18.64 16.95 -57.71 -0.98 -19.62 16 27 O -0.93 -15.97 18.15 -57.71 -1.05 -17.02 16 28 H 0.27 7.97 5.54 -40.82 -0.23 7.75 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 1.83 6.59 -51.93 -0.34 1.48 16 31 H 0.07 1.52 6.32 -51.93 -0.33 1.19 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.96 7.76 -51.93 -0.40 1.55 16 39 H 0.41 7.03 7.55 -40.82 -0.31 6.72 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 1.10 6.99 -51.93 -0.36 0.73 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -36.10 358.50 -10.26 -46.36 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.96 Total: 6.02 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.09 Total: -14.27 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.07 Total: -53.31 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -1.94 Total: -47.47 kcal Atomic # 14 Polarization: 26.62 SS G_CDS: -5.10 Total: 21.52 kcal Atomic # 16 Polarization: 36.39 SS G_CDS: -0.64 Total: 35.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.10 -10.26 -46.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024809071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.645 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds