Wall clock time and date at job start Tue Mar 31 2020 07:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47016 * 2 1 4 4 N 1.46495 * 109.47667 * 120.00171 * 2 1 3 5 5 C 1.34780 * 120.00103 * 275.00242 * 4 2 1 6 6 O 1.21277 * 119.99694 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00110 * 179.97438 * 5 4 2 8 8 C 1.53049 * 113.14995 * 280.37224 * 7 5 4 9 9 S 1.81422 * 89.88736 * 211.85155 * 8 7 5 10 10 O 1.42100 * 112.75888 * 280.47707 * 9 8 7 11 11 O 1.42105 * 112.75380 * 136.72746 * 9 8 7 12 12 C 1.53041 * 113.14828 * 179.97438 * 7 5 4 13 13 C 1.53001 * 109.47237 * 240.00258 * 2 1 3 14 14 H 1.08997 * 109.50038 * 184.93429 * 13 2 1 15 15 C 1.53046 * 109.49833 * 64.83579 * 13 2 1 16 16 C 1.53076 * 109.65799 * 178.75257 * 15 13 2 17 17 C 1.53191 * 109.29448 * 61.15177 * 16 15 13 18 18 N 1.46922 * 108.89492 * 305.57743 * 17 16 15 19 19 C 1.36942 * 120.62796 * 233.51841 * 18 17 16 20 20 H 1.08007 * 119.99636 * 151.83092 * 19 18 17 21 21 C 1.38806 * 120.00203 * 331.83144 * 19 18 17 22 22 N 1.31624 * 120.00191 * 343.08250 * 21 19 18 23 23 Si 1.86800 * 120.00146 * 163.07925 * 21 19 18 24 24 H 1.48503 * 109.47195 * 89.99708 * 23 21 19 25 25 H 1.48498 * 109.47355 * 210.00264 * 23 21 19 26 26 H 1.48504 * 109.46850 * 330.00278 * 23 21 19 27 27 C 1.46924 * 118.73925 * 53.53695 * 18 17 16 28 28 H 1.09002 * 109.47273 * 299.99674 * 1 2 3 29 29 H 1.09000 * 109.47532 * 60.00051 * 1 2 3 30 30 H 1.09003 * 109.47016 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00268 * 94.99523 * 4 2 1 32 32 H 1.08999 * 112.49290 * 50.21337 * 7 5 4 33 33 H 1.08994 * 113.15055 * 327.11060 * 8 7 5 34 34 H 1.09000 * 113.14081 * 96.59678 * 8 7 5 35 35 H 1.08991 * 113.15222 * 263.40558 * 12 7 5 36 36 H 1.08998 * 113.15018 * 32.85441 * 12 7 5 37 37 H 1.09005 * 109.45739 * 298.70799 * 15 13 2 38 38 H 1.08993 * 109.46079 * 58.67507 * 15 13 2 39 39 H 1.09001 * 109.38719 * 301.27455 * 16 15 13 40 40 H 1.09000 * 109.61874 * 181.17050 * 16 15 13 41 41 H 1.09003 * 109.58247 * 185.71821 * 17 16 15 42 42 H 1.08998 * 109.58518 * 65.43905 * 17 16 15 43 43 H 0.96995 * 120.00379 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.58325 * 66.18371 * 27 18 17 45 45 H 1.08999 * 109.58743 * 186.60123 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8590 1.1585 2.4115 7 6 2.6490 -0.7289 3.5877 8 6 1.5699 -1.5614 4.2839 9 16 2.3561 -1.2340 5.8859 10 8 3.4868 -2.0615 6.1227 11 8 1.4171 -0.9172 6.9044 12 6 2.7346 0.1813 4.8151 13 6 2.0400 -0.7212 -1.2493 14 1 3.1263 -0.7986 -1.2067 15 6 1.6319 0.0666 -2.4963 16 6 2.1671 -0.6353 -3.7469 17 6 1.5606 -2.0391 -3.8380 18 7 1.8247 -2.7540 -2.5819 19 6 2.4275 -3.9836 -2.5923 20 1 3.0183 -4.3025 -1.7464 21 6 2.2790 -4.8200 -3.6901 22 7 1.3168 -4.5990 -4.5606 23 14 3.4449 -6.2594 -3.9321 24 1 2.8949 -7.4611 -3.2549 25 1 3.5967 -6.5349 -5.3834 26 1 4.7699 -5.9263 -3.3501 27 6 1.4295 -2.1247 -1.3144 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.2490 -1.6317 1.1525 32 1 3.5677 -1.2854 3.4022 33 1 0.5734 -1.1282 4.1992 34 1 1.5930 -2.6142 4.0025 35 1 3.7327 0.5876 4.9785 36 1 1.9630 0.9509 4.8325 37 1 0.5446 0.1225 -2.5509 38 1 2.0448 1.0738 -2.4408 39 1 3.2525 -0.7114 -3.6826 40 1 1.8939 -0.0627 -4.6332 41 1 2.0144 -2.5799 -4.6686 42 1 0.4848 -1.9629 -3.9959 43 1 1.2129 -5.1837 -5.3275 44 1 0.3429 -2.0533 -1.2652 45 1 1.7966 -2.7220 -0.4798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025429406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:27 Heat of formation + Delta-G solvation = -68.090369 kcal Electronic energy + Delta-G solvation = -27000.123618 eV Core-core repulsion = 23146.210083 eV Total energy + Delta-G solvation = -3853.913535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33942 -38.35471 -37.71685 -36.54371 -36.10617 -35.20127 -33.09057 -31.11066 -30.51804 -28.19370 -27.07084 -25.37292 -25.27277 -23.35123 -22.21251 -20.62993 -20.15802 -19.21641 -18.72449 -17.97131 -16.88688 -16.76009 -16.66301 -16.13492 -15.67017 -15.37700 -14.94737 -14.67262 -14.18930 -14.09724 -13.85323 -13.58143 -13.48751 -13.14680 -12.65045 -12.62381 -12.58467 -12.44489 -12.34149 -12.26769 -12.04500 -11.82591 -11.69165 -11.36944 -11.05352 -10.96907 -10.77668 -10.63419 -10.53975 -10.26017 -10.19066 -9.97742 -9.89473 -9.65193 -9.45801 -9.04613 -8.52021 -6.72283 -5.85280 -3.28375 -0.28511 1.53216 2.42749 3.01353 3.25813 3.32107 3.39978 3.41491 3.66978 3.75040 4.16478 4.42388 4.47823 4.70556 4.76564 4.96403 4.99875 5.15162 5.29782 5.33297 5.35327 5.48699 5.50856 5.61647 5.64230 5.78501 5.94067 6.05008 6.15209 6.17965 6.27536 6.41546 6.50939 6.54724 6.64331 6.71286 6.80646 6.90848 7.34190 7.45500 7.61708 7.72257 8.10542 8.38298 9.14466 9.78041 10.34654 11.22898 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.002987 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.656026 B = 9370.518121 C =10804.887971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 H 0.082 0.918 4 N -0.714 5.714 5 C 0.537 3.463 6 O -0.537 6.537 7 C -0.098 4.098 8 C -0.593 4.593 9 S 2.417 3.583 10 O -0.910 6.910 11 O -0.922 6.922 12 C -0.578 4.578 13 C -0.113 4.113 14 H 0.072 0.928 15 C -0.100 4.100 16 C -0.142 4.142 17 C 0.170 3.830 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.151 3.849 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.404 0.596 32 H 0.136 0.864 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.154 0.846 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.254 0.746 44 H 0.026 0.974 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 9.009 15.355 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.100 0.900 4 N -0.365 5.365 5 C 0.321 3.679 6 O -0.414 6.414 7 C -0.121 4.121 8 C -0.721 4.721 9 S 2.598 3.402 10 O -0.908 6.908 11 O -0.919 6.919 12 C -0.707 4.707 13 C -0.134 4.134 14 H 0.091 0.909 15 C -0.138 4.138 16 C -0.182 4.182 17 C 0.044 3.956 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.205 1.205 27 C 0.024 3.976 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.240 0.760 32 H 0.154 0.846 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.172 0.828 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.018 9.278 16.338 18.816 hybrid contribution 0.559 -0.835 -1.475 1.785 sum 1.577 8.443 14.863 17.166 Atomic orbital electron populations 1.22261 0.95318 1.02801 1.01949 1.21080 0.94261 0.96760 0.83497 0.89952 1.46169 1.66307 1.14494 1.09522 1.19636 0.77730 0.86870 0.83693 1.90695 1.50287 1.15698 1.84728 1.21609 0.99717 0.96404 0.94412 1.30970 1.09681 1.09018 1.22462 1.08256 0.76628 0.79216 0.76139 1.93738 1.48197 1.63564 1.85259 1.93657 1.61026 1.82226 1.55030 1.30871 1.12975 1.17746 1.09104 1.21963 1.00935 0.98082 0.92441 0.90935 1.21421 1.00526 0.97203 0.94685 1.22185 1.00608 0.99605 0.95769 1.20781 0.96629 0.88005 0.90201 1.44009 1.69785 1.17619 0.99886 1.19130 1.23446 0.92127 1.03862 0.91836 1.25037 0.97336 0.97639 0.99444 1.70031 1.30144 1.39475 1.14824 0.86331 0.80976 0.82472 0.77173 1.21368 1.21534 1.20480 1.20995 0.96176 0.90294 0.90087 0.92932 0.91319 0.91498 0.76006 0.84574 0.83340 0.84602 0.85246 0.82777 0.92247 0.93549 0.92825 0.93159 0.89622 0.96454 0.93586 0.95668 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 8.76 37.15 0.33 -1.81 16 2 C 0.15 1.97 2.35 -67.94 -0.16 1.81 16 3 H 0.08 1.17 7.58 -51.93 -0.39 0.78 16 4 N -0.71 -8.30 5.01 -53.81 -0.27 -8.57 16 5 C 0.54 6.20 7.29 -10.98 -0.08 6.12 16 6 O -0.54 -7.98 15.60 5.56 0.09 -7.89 16 7 C -0.10 -0.74 3.82 -91.72 -0.35 -1.09 16 8 C -0.59 -3.38 7.48 37.18 0.28 -3.10 16 9 S 2.42 14.69 7.55 -107.50 -0.81 13.87 16 10 O -0.91 -8.30 18.18 -57.30 -1.04 -9.34 16 11 O -0.92 -8.86 18.18 -57.30 -1.04 -9.90 16 12 C -0.58 -3.67 7.18 37.18 0.27 -3.40 16 13 C -0.11 -1.75 2.28 -90.50 -0.21 -1.96 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.10 -1.57 4.88 -26.67 -0.13 -1.70 16 16 C -0.14 -2.59 6.09 -26.59 -0.16 -2.75 16 17 C 0.17 3.86 5.30 -3.71 -0.02 3.85 16 18 N -0.59 -13.86 3.00 -172.32 -0.52 -14.38 16 19 C -0.26 -6.67 9.58 -15.06 -0.14 -6.82 16 20 H 0.06 1.61 7.89 -52.48 -0.41 1.19 16 21 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 22 N -0.90 -25.34 11.20 55.49 0.62 -24.72 16 23 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.15 2.81 5.26 -3.71 -0.02 2.79 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.87 6.59 -51.93 -0.34 0.52 16 30 H 0.07 0.89 6.23 -51.93 -0.32 0.57 16 31 H 0.40 4.20 7.27 -40.82 -0.30 3.90 16 32 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.15 0.83 8.11 -51.93 -0.42 0.41 16 34 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.15 1.09 7.57 -51.93 -0.39 0.70 16 37 H 0.06 0.92 6.63 -51.93 -0.34 0.57 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.60 16 44 H 0.03 0.48 6.06 -51.93 -0.31 0.17 16 45 H 0.05 0.82 6.75 -51.93 -0.35 0.47 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -35.70 363.15 -9.86 -45.57 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.85 Total: 2.01 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.49 Total: -8.04 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.16 Total: -47.67 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -2.00 Total: -27.13 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Atomic # 16 Polarization: 14.69 SS G_CDS: -0.81 Total: 13.87 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.70 -9.86 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025429406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.521 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds