Wall clock time and date at job start Tue Mar 31 2020 07:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47358 * 2 1 4 4 N 1.46500 * 109.46656 * 119.99981 * 2 1 3 5 5 C 1.34776 * 120.00160 * 274.99390 * 4 2 1 6 6 O 1.21285 * 119.99721 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00217 * 180.02562 * 5 4 2 8 8 C 1.53041 * 113.15313 * 280.37710 * 7 5 4 9 9 S 1.81427 * 89.88874 * 211.85100 * 8 7 5 10 10 O 1.42097 * 112.75464 * 280.47089 * 9 8 7 11 11 O 1.42102 * 112.75046 * 136.72751 * 9 8 7 12 12 C 1.53043 * 113.15274 * 180.02562 * 7 5 4 13 13 C 1.53001 * 109.46960 * 239.99597 * 2 1 3 14 14 H 1.09001 * 109.50049 * 299.94163 * 13 2 1 15 15 C 1.53034 * 109.49730 * 60.00291 * 13 2 1 16 16 C 1.53041 * 109.53036 * 181.35469 * 15 13 2 17 17 C 1.53198 * 109.30995 * 298.61732 * 16 15 13 18 18 N 1.46927 * 108.76598 * 54.65265 * 17 16 15 19 19 C 1.36932 * 120.62756 * 126.36034 * 18 17 16 20 20 H 1.08003 * 120.00217 * 207.69713 * 19 18 17 21 21 C 1.38813 * 120.00221 * 27.70598 * 19 18 17 22 22 N 1.31616 * 120.00052 * 17.33741 * 21 19 18 23 23 Si 1.86800 * 119.99664 * 197.34958 * 21 19 18 24 24 H 1.48498 * 109.47504 * 59.99631 * 23 21 19 25 25 H 1.48509 * 109.46746 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47155 * 299.99245 * 23 21 19 27 27 C 1.46923 * 118.73616 * 306.38393 * 18 17 16 28 28 H 1.08999 * 109.47241 * 300.00367 * 1 2 3 29 29 H 1.09007 * 109.47117 * 59.99724 * 1 2 3 30 30 H 1.08999 * 109.47358 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00008 * 95.00579 * 4 2 1 32 32 H 1.09002 * 112.49344 * 50.21955 * 7 5 4 33 33 H 1.08998 * 113.14948 * 327.10815 * 8 7 5 34 34 H 1.09001 * 113.14923 * 96.59269 * 8 7 5 35 35 H 1.08998 * 113.14693 * 263.40815 * 12 7 5 36 36 H 1.08998 * 113.14697 * 32.88600 * 12 7 5 37 37 H 1.09003 * 109.46425 * 301.37066 * 15 13 2 38 38 H 1.09004 * 109.46217 * 61.33984 * 15 13 2 39 39 H 1.08997 * 109.49561 * 58.58046 * 16 15 13 40 40 H 1.09003 * 109.50208 * 178.67886 * 16 15 13 41 41 H 1.09003 * 109.59337 * 294.86381 * 17 16 15 42 42 H 1.09001 * 109.58112 * 174.43638 * 17 16 15 43 43 H 0.96997 * 119.99694 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.59069 * 293.81812 * 27 18 17 45 45 H 1.09003 * 109.58529 * 173.39896 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8583 1.1584 2.4117 7 6 2.6498 -0.7285 3.5875 8 6 1.5715 -1.5617 4.2841 9 16 2.3580 -1.2339 5.8858 10 8 3.4892 -2.0608 6.1222 11 8 1.4192 -0.9177 6.9046 12 6 2.7341 0.1813 4.8153 13 6 2.0400 -0.7213 -1.2492 14 1 1.6777 -1.7494 -1.2491 15 6 1.5302 -0.0004 -2.4992 16 6 2.0119 -0.7408 -3.7490 17 6 3.5435 -0.7383 -3.7805 18 7 4.0432 -1.2985 -2.5174 19 6 4.9309 -2.3411 -2.5195 20 1 4.9594 -3.0277 -1.6863 21 6 5.7942 -2.5156 -3.5924 22 7 6.0105 -1.5245 -4.4309 23 14 6.6487 -4.1572 -3.8461 24 1 5.6303 -5.2225 -4.0282 25 1 7.5104 -4.0852 -5.0535 26 1 7.4844 -4.4690 -2.6589 27 6 3.5719 -0.7189 -1.2523 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.2490 -1.6318 1.1526 32 1 3.5687 -1.2845 3.4018 33 1 0.5746 -1.1292 4.1998 34 1 1.5950 -2.6145 4.0027 35 1 3.7317 0.5888 4.9788 36 1 1.9612 0.9496 4.8331 37 1 0.4405 0.0209 -2.4871 38 1 1.9132 1.0200 -2.5114 39 1 1.6499 -1.7686 -3.7250 40 1 1.6291 -0.2404 -4.6385 41 1 3.9051 0.2835 -3.8955 42 1 3.8927 -1.3477 -4.6141 43 1 6.6141 -1.6463 -5.1804 44 1 3.9358 0.3044 -1.1610 45 1 3.9399 -1.3156 -0.4176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025429410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:51 Heat of formation + Delta-G solvation = -69.865432 kcal Electronic energy + Delta-G solvation = -26979.534332 eV Core-core repulsion = 23125.543825 eV Total energy + Delta-G solvation = -3853.990507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30177 -38.23757 -37.70924 -36.53948 -36.10939 -35.22626 -33.08206 -31.08010 -30.50589 -28.57063 -27.06577 -25.48576 -24.91457 -23.05178 -21.98360 -20.54700 -20.37594 -19.20937 -19.16342 -17.89802 -16.90477 -16.78760 -16.63985 -16.14806 -15.69304 -15.37807 -14.86994 -14.52073 -14.26140 -14.00445 -13.67402 -13.52851 -13.43267 -13.24216 -12.71153 -12.63792 -12.61643 -12.51897 -12.34061 -12.25332 -12.00264 -11.85542 -11.57426 -11.36083 -11.16993 -11.00136 -10.77202 -10.70209 -10.48295 -10.27617 -10.20175 -9.99181 -9.90070 -9.59379 -9.47905 -9.01831 -8.50169 -6.71817 -5.83087 -3.25851 -0.27966 1.53682 2.45594 3.02612 3.26485 3.34480 3.40940 3.41244 3.67832 3.75681 4.17998 4.43580 4.49313 4.72329 4.76409 4.93550 4.97416 5.18585 5.29624 5.31664 5.35539 5.49063 5.51102 5.53584 5.70105 5.74215 5.95337 6.00786 6.04945 6.23234 6.29084 6.36621 6.47155 6.56174 6.65778 6.74476 6.82023 6.92110 7.35775 7.46389 7.63152 7.73902 8.13223 8.40179 9.16537 9.80214 10.36945 11.25172 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.003044 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.377686 B = 9197.350559 C =10700.622453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.087 0.913 4 N -0.713 5.713 5 C 0.539 3.461 6 O -0.535 6.535 7 C -0.098 4.098 8 C -0.593 4.593 9 S 2.417 3.583 10 O -0.910 6.910 11 O -0.923 6.923 12 C -0.578 4.578 13 C -0.111 4.111 14 H 0.072 0.928 15 C -0.101 4.101 16 C -0.142 4.142 17 C 0.169 3.831 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.155 3.845 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.403 0.597 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.154 0.846 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.017 0.983 42 H 0.086 0.914 43 H 0.255 0.745 44 H 0.016 0.984 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.125 1.019 15.075 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.105 0.895 4 N -0.363 5.363 5 C 0.322 3.678 6 O -0.412 6.412 7 C -0.121 4.121 8 C -0.721 4.721 9 S 2.598 3.402 10 O -0.907 6.907 11 O -0.920 6.920 12 C -0.707 4.707 13 C -0.132 4.132 14 H 0.090 0.910 15 C -0.139 4.139 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.029 3.971 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.172 0.828 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.035 0.965 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.028 1.415 16.065 19.537 hybrid contribution 0.504 -0.865 -1.468 1.777 sum -10.524 0.550 14.597 18.003 Atomic orbital electron populations 1.22202 0.95629 1.01903 1.02223 1.21104 0.93525 0.97596 0.83600 0.89499 1.46065 1.66462 1.14305 1.09464 1.19605 0.77675 0.86864 0.83661 1.90703 1.50144 1.15622 1.84729 1.21615 0.99716 0.96397 0.94406 1.30966 1.09655 1.08807 1.22696 1.08246 0.76615 0.79269 0.76098 1.93742 1.48081 1.63614 1.85235 1.93654 1.61095 1.82268 1.55018 1.30862 1.13120 1.17723 1.09014 1.21980 0.99610 0.99201 0.92417 0.91001 1.21443 0.98728 0.99049 0.94684 1.22178 1.00879 0.99327 0.95729 1.20804 0.87435 0.97239 0.90233 1.44028 1.49823 1.38004 0.99474 1.19110 1.11527 1.02267 1.05653 0.91805 1.25033 0.97219 0.97473 0.99800 1.70028 1.37908 1.29434 1.17162 0.86381 0.79125 0.83929 0.77381 1.21038 1.21615 1.20867 1.20857 0.89832 0.96351 0.90100 0.92701 0.91199 0.92640 0.76242 0.84422 0.83466 0.84790 0.85103 0.82783 0.93128 0.92590 0.92781 0.93219 0.96502 0.89549 0.93536 0.96585 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.13 37.16 0.34 -1.51 16 2 C 0.15 1.93 2.16 -67.93 -0.15 1.78 16 3 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 4 N -0.71 -8.19 4.48 -53.81 -0.24 -8.44 16 5 C 0.54 6.35 7.29 -10.99 -0.08 6.27 16 6 O -0.54 -8.17 15.61 5.55 0.09 -8.09 16 7 C -0.10 -0.77 3.82 -91.73 -0.35 -1.12 16 8 C -0.59 -3.16 7.48 37.18 0.28 -2.88 16 9 S 2.42 14.75 7.55 -107.50 -0.81 13.94 16 10 O -0.91 -8.45 18.18 -57.30 -1.04 -9.49 16 11 O -0.92 -8.78 18.18 -57.30 -1.04 -9.82 16 12 C -0.58 -3.90 7.18 37.18 0.27 -3.63 16 13 C -0.11 -1.71 1.97 -90.50 -0.18 -1.89 16 14 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.10 -1.57 4.85 -26.69 -0.13 -1.70 16 16 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 17 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 18 N -0.59 -14.19 2.99 -172.32 -0.52 -14.70 16 19 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 20 H 0.06 1.64 7.89 -52.48 -0.41 1.22 16 21 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 22 N -0.90 -25.72 11.19 55.49 0.62 -25.10 16 23 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.16 3.04 5.56 -3.71 -0.02 3.02 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.77 6.40 -51.93 -0.33 0.44 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.40 3.92 8.43 -40.82 -0.34 3.57 16 32 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.15 0.74 8.11 -51.93 -0.42 0.32 16 34 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.15 1.13 7.57 -51.93 -0.39 0.73 16 37 H 0.05 0.67 6.36 -51.93 -0.33 0.34 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 0.95 7.45 -51.93 -0.39 0.56 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -36.32 368.11 -9.97 -46.30 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.11 Total: 1.16 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.43 Total: -7.43 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.14 Total: -48.23 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -2.00 Total: -27.40 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 16 Polarization: 14.75 SS G_CDS: -0.81 Total: 13.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.32 -9.97 -46.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025429410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.568 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds