Wall clock time and date at job start Tue Mar 31 2020 07:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47682 * 2 1 4 4 N 1.46496 * 109.47130 * 239.99826 * 2 1 3 5 5 C 1.34784 * 119.99939 * 85.00424 * 4 2 1 6 6 O 1.21281 * 119.99840 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99983 * 180.02562 * 5 4 2 8 8 C 1.53044 * 113.14954 * 280.37087 * 7 5 4 9 9 S 1.81429 * 89.88990 * 211.85673 * 8 7 5 10 10 O 1.42110 * 112.75229 * 280.47442 * 9 8 7 11 11 O 1.42097 * 112.75607 * 136.72999 * 9 8 7 12 12 C 1.53049 * 113.14966 * 180.02562 * 7 5 4 13 13 C 1.53003 * 109.46909 * 120.00401 * 2 1 3 14 14 H 1.09002 * 109.50034 * 59.93208 * 13 2 1 15 15 C 1.53044 * 109.52454 * 299.85096 * 13 2 1 16 16 C 1.53066 * 109.66144 * 178.73194 * 15 13 2 17 17 C 1.53202 * 109.29419 * 61.15451 * 16 15 13 18 18 N 1.46921 * 108.89095 * 305.57926 * 17 16 15 19 19 C 1.36936 * 120.62896 * 233.55861 * 18 17 16 20 20 H 1.08007 * 119.99922 * 151.82366 * 19 18 17 21 21 C 1.38810 * 119.99947 * 331.81879 * 19 18 17 22 22 N 1.31613 * 120.00273 * 343.08601 * 21 19 18 23 23 Si 1.86803 * 119.99828 * 163.07892 * 21 19 18 24 24 H 1.48507 * 109.47194 * 60.00090 * 23 21 19 25 25 H 1.48502 * 109.47096 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47239 * 300.00059 * 23 21 19 27 27 C 1.46925 * 118.73959 * 53.53708 * 18 17 16 28 28 H 1.09002 * 109.46827 * 299.99987 * 1 2 3 29 29 H 1.08996 * 109.46856 * 59.99775 * 1 2 3 30 30 H 1.08993 * 109.47014 * 179.97438 * 1 2 3 31 31 H 0.97002 * 120.00209 * 265.00623 * 4 2 1 32 32 H 1.09000 * 112.50013 * 50.20973 * 7 5 4 33 33 H 1.08999 * 113.14780 * 327.11381 * 8 7 5 34 34 H 1.08994 * 113.14934 * 96.59697 * 8 7 5 35 35 H 1.08995 * 113.14531 * 263.40308 * 12 7 5 36 36 H 1.08993 * 113.14791 * 32.84495 * 12 7 5 37 37 H 1.09002 * 109.46193 * 298.69166 * 15 13 2 38 38 H 1.09008 * 109.45699 * 58.65931 * 15 13 2 39 39 H 1.09002 * 109.39095 * 301.28091 * 16 15 13 40 40 H 1.08998 * 109.62674 * 181.17131 * 16 15 13 41 41 H 1.08997 * 109.58441 * 185.72130 * 17 16 15 42 42 H 1.09001 * 109.58226 * 65.43722 * 17 16 15 43 43 H 0.96997 * 120.00271 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.59125 * 66.18147 * 27 18 17 45 45 H 1.09006 * 109.58704 * 186.46412 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8584 1.1584 -2.4117 7 6 2.6490 -0.7288 -3.5877 8 6 4.1703 -0.8937 -3.6090 9 16 4.1547 -0.7720 -5.4191 10 8 3.7735 -1.9878 -6.0484 11 8 5.1958 0.0531 -5.9235 12 6 2.7346 0.1814 -4.8152 13 6 2.0400 -0.7214 1.2492 14 1 1.6759 -1.7488 1.2502 15 6 1.5336 0.0012 2.4997 16 6 2.0158 -0.7361 3.7514 17 6 3.5476 -0.7396 3.7782 18 7 4.0442 -1.3014 2.5147 19 6 4.9300 -2.3456 2.5159 20 1 4.9506 -3.0372 1.6865 21 6 5.8014 -2.5153 3.5829 22 7 6.0198 -1.5223 4.4187 23 14 6.6642 -4.1532 3.8329 24 1 7.4928 -4.4633 2.6401 25 1 7.5340 -4.0763 5.0340 26 1 5.6513 -5.2223 4.0234 27 6 3.5719 -0.7217 1.2499 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2490 -1.6318 -1.1526 32 1 2.1137 -1.6587 -3.7798 33 1 4.6974 -0.0693 -3.1286 34 1 4.5009 -1.8675 -3.2478 35 1 1.8623 0.1082 -5.4645 36 1 2.9845 1.2129 -4.5671 37 1 1.9182 1.0211 2.5106 38 1 0.4438 0.0243 2.4894 39 1 1.6499 -1.7627 3.7301 40 1 1.6375 -0.2329 4.6412 41 1 3.8970 -1.3492 4.6115 42 1 3.9133 0.2807 3.8933 43 1 6.6290 -1.6407 5.1641 44 1 3.9377 0.3009 1.1575 45 1 3.9396 -1.3181 0.4148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025429414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:59 Heat of formation + Delta-G solvation = -70.199579 kcal Electronic energy + Delta-G solvation = -27120.071027 eV Core-core repulsion = 23266.066030 eV Total energy + Delta-G solvation = -3854.004997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29283 -38.22664 -37.65756 -36.49256 -36.07663 -35.21882 -33.08346 -31.07857 -30.51020 -28.56895 -26.99710 -25.49266 -24.91982 -23.03293 -21.98870 -20.53522 -20.38760 -19.16211 -19.14388 -17.88937 -16.92298 -16.70568 -16.58899 -16.07784 -15.68437 -15.40736 -14.91859 -14.39464 -14.34771 -13.89555 -13.70909 -13.47218 -13.40553 -13.24226 -12.75026 -12.58486 -12.56350 -12.51976 -12.35749 -12.23612 -11.95166 -11.80470 -11.59802 -11.31679 -11.17337 -11.00442 -10.72974 -10.69681 -10.48955 -10.27907 -10.20367 -9.99273 -9.89918 -9.59595 -9.48282 -9.01578 -8.50941 -6.71740 -5.83719 -3.27127 -0.22408 1.59264 2.46881 3.03344 3.31548 3.33423 3.40206 3.40347 3.72536 3.79925 4.21116 4.42739 4.51850 4.72294 4.82949 4.93416 5.02865 5.19104 5.31304 5.35253 5.39297 5.49145 5.53343 5.54611 5.70090 5.74271 5.95432 6.00799 6.05315 6.23119 6.28865 6.36806 6.47109 6.55916 6.65435 6.74273 6.81727 6.91724 7.35211 7.46618 7.62849 7.72991 8.13494 8.39758 9.15919 9.79493 10.36507 11.24493 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.011766 B = 0.003461 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.108192 B = 8088.588553 C = 9945.880461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.087 0.913 4 N -0.713 5.713 5 C 0.538 3.462 6 O -0.535 6.535 7 C -0.097 4.097 8 C -0.593 4.593 9 S 2.417 3.583 10 O -0.913 6.913 11 O -0.921 6.921 12 C -0.579 4.579 13 C -0.111 4.111 14 H 0.072 0.928 15 C -0.101 4.101 16 C -0.142 4.142 17 C 0.169 3.831 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.005 3.995 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.156 3.844 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.403 0.597 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.155 0.845 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.255 0.745 44 H 0.016 0.984 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 1.356 -14.694 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.105 0.895 4 N -0.363 5.363 5 C 0.322 3.678 6 O -0.412 6.412 7 C -0.120 4.120 8 C -0.721 4.721 9 S 2.598 3.402 10 O -0.910 6.910 11 O -0.918 6.918 12 C -0.708 4.708 13 C -0.132 4.132 14 H 0.090 0.910 15 C -0.139 4.139 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.081 0.919 21 C -0.194 4.194 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.029 3.971 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.153 0.847 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.173 0.827 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.352 1.866 -15.573 18.261 hybrid contribution -0.046 -1.014 1.329 1.673 sum -9.398 0.852 -14.243 17.086 Atomic orbital electron populations 1.22201 0.95608 1.01931 1.02229 1.21100 0.93534 0.97580 0.83605 0.89522 1.46067 1.66374 1.14350 1.09526 1.19623 0.77503 0.86952 0.83755 1.90702 1.50047 1.15662 1.84795 1.21595 0.95275 1.00332 0.94837 1.30979 1.00305 1.12483 1.28303 1.08243 0.77712 0.76563 0.77721 1.93728 1.82796 1.41883 1.72586 1.93660 1.52605 1.67387 1.78156 1.30875 1.21118 1.13367 1.05413 1.21976 0.99600 0.99203 0.92421 0.90998 1.21444 0.98747 0.99046 0.94665 1.22181 1.00877 0.99346 0.95719 1.20785 0.87449 0.97237 0.90200 1.44015 1.49984 1.37856 0.99454 1.19091 1.11300 1.02029 1.06133 0.91879 1.25039 0.97163 0.97416 0.99821 1.70020 1.37606 1.29396 1.17474 0.86391 0.79166 0.83909 0.77388 1.20898 1.21595 1.21026 1.20855 0.89825 0.96336 0.90105 0.91203 0.92681 0.92620 0.76245 0.84745 0.83101 0.84560 0.85354 0.82712 0.92613 0.93122 0.92806 0.93181 0.89625 0.96516 0.93527 0.96634 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.14 37.16 0.34 -1.53 16 2 C 0.15 1.93 2.16 -67.93 -0.15 1.78 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.71 -8.20 4.48 -53.80 -0.24 -8.44 16 5 C 0.54 6.34 7.29 -10.98 -0.08 6.26 16 6 O -0.54 -8.18 15.61 5.56 0.09 -8.09 16 7 C -0.10 -0.76 3.82 -91.72 -0.35 -1.11 16 8 C -0.59 -4.07 7.48 37.18 0.28 -3.80 16 9 S 2.42 16.45 7.55 -107.50 -0.81 15.64 16 10 O -0.91 -8.64 18.18 -57.30 -1.04 -9.68 16 11 O -0.92 -9.75 18.18 -57.30 -1.04 -10.80 16 12 C -0.58 -3.92 7.18 37.18 0.27 -3.66 16 13 C -0.11 -1.71 1.98 -90.50 -0.18 -1.88 16 14 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.10 -1.57 4.85 -26.67 -0.13 -1.70 16 16 C -0.14 -2.57 6.09 -26.59 -0.16 -2.73 16 17 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 18 N -0.59 -14.10 2.99 -172.32 -0.52 -14.62 16 19 C -0.26 -6.73 9.58 -15.06 -0.14 -6.87 16 20 H 0.06 1.61 7.89 -52.48 -0.41 1.19 16 21 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 22 N -0.90 -25.61 11.20 55.49 0.62 -24.99 16 23 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.16 3.02 5.55 -3.71 -0.02 3.00 16 28 H 0.07 0.77 6.41 -51.93 -0.33 0.44 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.40 3.92 8.42 -40.82 -0.34 3.58 16 32 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.15 1.13 8.11 -51.93 -0.42 0.71 16 34 H 0.14 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.15 1.20 7.57 -51.93 -0.39 0.81 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.67 6.37 -51.92 -0.33 0.34 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.94 7.44 -51.93 -0.39 0.55 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -36.10 368.14 -9.97 -46.07 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.12 Total: 1.65 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -0.43 Total: -8.32 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.14 Total: -48.04 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -2.00 Total: -28.57 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Atomic # 16 Polarization: 16.45 SS G_CDS: -0.81 Total: 15.64 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.10 -9.97 -46.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025429414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.125 kcal (2) G-P(sol) polarization free energy of solvation -36.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds