Wall clock time and date at job start Tue Mar 31 2020 05:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48497 * 109.47407 * 269.99723 * 3 2 1 5 5 H 1.48499 * 109.47209 * 30.00328 * 3 2 1 6 6 H 1.48507 * 109.46856 * 150.00286 * 3 2 1 7 7 C 1.38809 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00329 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00369 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47434 * 204.99910 * 10 9 7 12 12 C 1.52999 * 109.47219 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47105 * 60.00049 * 12 11 10 14 14 N 1.46496 * 109.47468 * 60.00285 * 13 12 11 15 15 C 1.34777 * 120.00266 * 155.00186 * 14 13 12 16 16 O 1.21274 * 120.00135 * 0.27234 * 15 14 13 17 17 C 1.50706 * 119.99766 * 179.97438 * 15 14 13 18 18 H 1.09002 * 110.01319 * 59.29813 * 17 15 14 19 19 C 1.53883 * 110.02374 * 180.67518 * 17 15 14 20 20 C 1.54162 * 108.70236 * 166.47188 * 19 17 15 21 21 S 1.82924 * 105.08741 * 332.09419 * 20 19 17 22 22 O 1.42094 * 109.35607 * 115.52167 * 21 20 19 23 23 O 1.42100 * 109.35096 * 248.72472 * 21 20 19 24 24 C 1.55041 * 110.02838 * 297.91788 * 17 15 14 25 25 C 1.53000 * 109.47187 * 299.99547 * 13 12 11 26 26 C 1.53002 * 109.46552 * 60.00548 * 25 13 12 27 27 H 0.97000 * 119.99849 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99625 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47146 * 324.99917 * 10 9 7 30 30 H 1.08999 * 109.46886 * 59.99524 * 11 10 9 31 31 H 1.09002 * 109.46959 * 300.00120 * 11 10 9 32 32 H 1.09002 * 109.46731 * 299.99559 * 12 11 10 33 33 H 1.09007 * 109.46839 * 180.02562 * 12 11 10 34 34 H 1.09002 * 109.46830 * 180.02562 * 13 12 11 35 35 H 0.96999 * 119.99691 * 334.99171 * 14 13 12 36 36 H 1.09000 * 109.64692 * 286.32366 * 19 17 15 37 37 H 1.09000 * 109.64620 * 46.61845 * 19 17 15 38 38 H 1.09001 * 110.32046 * 90.99480 * 20 19 17 39 39 H 1.08996 * 110.31992 * 213.09130 * 20 19 17 40 40 H 1.09005 * 110.79253 * 316.54437 * 24 17 15 41 41 H 1.08998 * 110.79141 * 80.00849 * 24 17 15 42 42 H 1.08998 * 109.47335 * 179.97438 * 25 13 12 43 43 H 1.08992 * 109.47302 * 300.00298 * 25 13 12 44 44 H 1.09006 * 109.47110 * 180.02562 * 26 25 13 45 45 H 1.08992 * 109.47521 * 59.99884 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 6 1.1807 -4.7516 -0.6133 12 6 1.9454 -6.0768 -0.6139 13 6 2.3088 -6.4565 0.8230 14 7 1.0846 -6.5997 1.6148 15 6 1.0782 -7.3852 2.7099 16 8 2.0874 -7.9697 3.0428 17 6 -0.1811 -7.5319 3.5247 18 1 -0.9822 -7.9335 2.9042 19 6 0.0729 -8.4616 4.7244 20 6 -1.1024 -8.3255 5.7127 21 16 -1.7421 -6.6303 5.4613 22 8 -3.0680 -6.6975 4.9549 23 8 -1.4605 -5.8453 6.6118 24 6 -0.5993 -6.1576 4.1079 25 6 3.1861 -5.3618 1.4335 26 6 2.4213 -4.0366 1.4342 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3880 -0.0016 29 1 2.9686 -3.5501 -0.5921 30 1 0.9214 -4.4808 -1.6368 31 1 0.2700 -4.8583 -0.0239 32 1 2.8563 -5.9703 -1.2030 33 1 1.3206 -6.8566 -1.0493 34 1 2.8540 -7.4004 0.8225 35 1 0.2785 -6.1289 1.3509 36 1 0.1444 -9.4932 4.3798 37 1 1.0019 -8.1770 5.2183 38 1 -1.8755 -9.0594 5.4849 39 1 -0.7520 -8.4514 6.7371 40 1 0.2663 -5.6246 4.5013 41 1 -1.1148 -5.5592 3.3567 42 1 3.4446 -5.6321 2.4573 43 1 4.0969 -5.2554 0.8445 44 1 3.0464 -3.2565 1.8687 45 1 1.5104 -4.1431 2.0232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026523997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:32 Heat of formation + Delta-G solvation = -109.521795 kcal Electronic energy + Delta-G solvation = -27194.486968 eV Core-core repulsion = 23338.776832 eV Total energy + Delta-G solvation = -3855.710136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.50591 -38.37460 -37.32692 -36.37010 -36.00655 -34.75256 -32.89387 -31.08869 -30.52789 -30.15657 -27.70904 -26.15088 -23.82850 -23.02210 -22.28935 -21.03579 -20.53505 -19.15961 -18.95306 -17.98228 -17.27055 -17.06636 -16.41634 -16.04043 -15.55632 -15.45589 -15.20609 -14.69947 -14.47400 -14.33300 -13.97478 -13.65528 -13.54464 -13.20747 -12.93058 -12.57916 -12.48376 -12.44798 -12.40383 -12.29278 -12.17050 -11.95070 -11.69339 -11.51744 -11.26723 -11.06247 -10.90182 -10.89365 -10.75336 -10.47470 -10.23853 -10.18240 -9.90551 -9.78189 -9.62158 -9.06203 -8.88506 -6.99423 -5.80326 -3.08959 -0.31064 2.11965 2.43020 2.94679 3.28417 3.41195 3.46903 3.48281 3.65973 3.98597 4.05620 4.20591 4.39447 4.46140 4.55113 4.68444 4.89171 4.97038 4.99650 5.04810 5.17254 5.27683 5.44103 5.44856 5.48527 5.59616 5.62648 5.67257 5.78603 5.83997 5.92968 6.00661 6.18715 6.27565 6.39598 6.43883 6.56172 6.66906 6.91358 7.06153 7.38187 7.67276 8.04661 8.38571 9.49799 10.07107 10.41299 11.42338 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.003402 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.201084 B = 8229.203849 C = 9758.141669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.125 4.125 12 C -0.123 4.123 13 C 0.147 3.853 14 N -0.711 5.711 15 C 0.530 3.470 16 O -0.539 6.539 17 C -0.112 4.112 18 H 0.121 0.879 19 C -0.095 4.095 20 C -0.593 4.593 21 S 2.394 3.606 22 O -0.933 6.933 23 O -0.933 6.933 24 C -0.587 4.587 25 C -0.129 4.129 26 C -0.133 4.133 27 H 0.255 0.745 28 H 0.382 0.618 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.403 0.597 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 -20.788 6.418 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.164 4.164 12 C -0.161 4.161 13 C 0.043 3.957 14 N -0.363 5.363 15 C 0.314 3.686 16 O -0.416 6.416 17 C -0.135 4.135 18 H 0.138 0.862 19 C -0.134 4.134 20 C -0.722 4.722 21 S 2.577 3.423 22 O -0.930 6.930 23 O -0.930 6.930 24 C -0.716 4.716 25 C -0.168 4.168 26 C -0.174 4.174 27 H 0.065 0.935 28 H 0.216 0.784 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.239 0.761 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.939 -20.530 7.091 21.740 hybrid contribution 0.351 0.870 -0.492 1.059 sum -0.588 -19.660 6.598 20.747 Atomic orbital electron populations 1.69648 1.05098 1.25679 1.57732 1.24722 0.95492 0.97654 1.02991 0.86223 0.78699 0.83960 0.77505 1.21746 1.21774 1.20787 1.19226 0.90965 0.84143 1.42667 0.91263 1.42418 1.05691 0.99812 1.88646 1.20225 0.94349 0.85869 0.92820 1.21825 0.98572 0.94287 1.01697 1.21803 1.01603 0.97868 0.94839 1.21021 0.85147 0.99170 0.90343 1.46126 1.15100 1.47787 1.27306 1.19869 0.88976 0.78866 0.80874 1.90709 1.34327 1.47338 1.69214 1.22023 0.99283 0.93694 0.98504 0.86150 1.21711 0.97419 1.01855 0.92430 1.30539 1.09457 1.23435 1.08815 1.09010 0.76919 0.79042 0.77343 1.93638 1.32539 1.86247 1.80559 1.93637 1.85888 1.66849 1.46672 1.30784 1.17751 1.03985 1.19044 1.21932 0.98433 0.95638 1.00798 1.22237 0.99604 0.94856 1.00677 0.93511 0.78415 0.93535 0.91385 0.92691 0.90290 0.91761 0.89825 0.76077 0.88377 0.88446 0.84382 0.84064 0.83540 0.83321 0.92273 0.91332 0.92077 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.90 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -17.13 5.12 -53.43 -0.27 -17.41 16 10 C 0.18 3.19 2.77 -67.93 -0.19 3.00 16 11 C -0.13 -1.75 5.22 -26.73 -0.14 -1.89 16 12 C -0.12 -1.34 5.61 -26.73 -0.15 -1.49 16 13 C 0.15 1.69 2.78 -67.94 -0.19 1.50 16 14 N -0.71 -7.38 4.17 -53.81 -0.22 -7.61 16 15 C 0.53 5.60 7.11 -10.98 -0.08 5.52 16 16 O -0.54 -7.40 15.48 5.56 0.09 -7.31 16 17 C -0.11 -0.80 2.96 -90.23 -0.27 -1.07 16 18 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 19 C -0.10 -0.60 5.25 -25.66 -0.13 -0.73 16 20 C -0.59 -2.94 7.26 37.76 0.27 -2.67 16 21 S 2.39 19.41 6.11 -107.50 -0.66 18.75 16 22 O -0.93 -10.65 18.14 -57.71 -1.05 -11.69 16 23 O -0.93 -11.47 18.15 -57.71 -1.05 -12.52 16 24 C -0.59 -4.35 6.61 38.24 0.25 -4.10 16 25 C -0.13 -1.72 5.60 -26.73 -0.15 -1.87 16 26 C -0.13 -2.19 5.34 -26.73 -0.14 -2.33 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.38 9.58 7.80 -40.82 -0.32 9.27 16 29 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.72 6.50 -51.93 -0.34 0.38 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.98 7.58 -51.93 -0.39 0.59 16 35 H 0.40 3.72 6.86 -40.82 -0.28 3.44 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.70 7.69 -51.93 -0.40 0.30 16 38 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.15 1.13 8.10 -51.93 -0.42 0.71 16 41 H 0.15 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.88 7.60 -51.93 -0.39 0.48 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -36.92 368.95 -10.22 -47.14 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.16 Total: 7.98 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -1.16 Total: -13.16 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.23 Total: -51.84 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -2.01 Total: -31.52 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 19.41 SS G_CDS: -0.66 Total: 18.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.92 -10.22 -47.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026523997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.382 kcal (2) G-P(sol) polarization free energy of solvation -36.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds