Wall clock time and date at job start Tue Mar 31 2020 05:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 12 12 C 1.53004 * 109.47278 * 300.00073 * 11 10 9 13 13 C 1.52999 * 109.47194 * 300.00130 * 12 11 10 14 14 N 1.46495 * 109.47260 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99975 * 84.99980 * 14 13 12 16 16 O 1.21283 * 120.00347 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00280 * 179.97438 * 15 14 13 18 18 H 1.09001 * 109.64458 * 300.43041 * 17 15 14 19 19 C 1.53875 * 109.64869 * 180.02562 * 17 15 14 20 20 C 1.55046 * 106.62238 * 192.97073 * 19 17 15 21 21 S 1.83284 * 102.57103 * 42.43343 * 20 19 17 22 22 O 1.42099 * 109.35466 * 90.18479 * 21 20 19 23 23 O 1.42099 * 109.35284 * 223.25849 * 21 20 19 24 24 C 1.54165 * 109.64418 * 60.72791 * 17 15 14 25 25 C 1.53006 * 109.47148 * 59.99641 * 13 12 11 26 26 C 1.52998 * 109.47063 * 300.00349 * 25 13 12 27 27 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 30 30 H 1.08997 * 109.47293 * 60.00168 * 11 10 9 31 31 H 1.09003 * 109.47189 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.47238 * 179.97438 * 12 11 10 33 33 H 1.09003 * 109.46809 * 60.00014 * 12 11 10 34 34 H 1.09003 * 109.47147 * 299.99677 * 13 12 11 35 35 H 0.97000 * 120.00066 * 265.00148 * 14 13 12 36 36 H 1.09009 * 110.02586 * 312.25626 * 19 17 15 37 37 H 1.08993 * 110.03115 * 73.67539 * 19 17 15 38 38 H 1.09007 * 110.78927 * 160.70321 * 20 19 17 39 39 H 1.09000 * 110.78853 * 284.16215 * 20 19 17 40 40 H 1.09008 * 110.31647 * 266.66357 * 24 17 15 41 41 H 1.09001 * 110.32301 * 28.85532 * 24 17 15 42 42 H 1.08997 * 109.47326 * 180.02562 * 25 13 12 43 43 H 1.09003 * 109.47067 * 59.99987 * 25 13 12 44 44 H 1.09003 * 109.46883 * 299.99751 * 26 25 13 45 45 H 1.08997 * 109.47445 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 2.4223 -4.0429 -1.4277 12 6 1.1443 -4.1962 -2.2548 13 6 0.2668 -5.2884 -1.6400 14 7 -0.9571 -5.4347 -2.4316 15 6 -0.9630 -6.2249 -3.5234 16 8 0.0448 -6.8151 -3.8504 17 6 -2.2222 -6.3759 -4.3375 18 1 -3.0173 -6.7802 -3.7110 19 6 -1.9629 -7.3255 -5.5202 20 6 -3.1690 -7.1747 -6.4828 21 16 -3.4414 -5.3623 -6.5001 22 8 -2.6727 -4.7805 -7.5440 23 8 -4.8343 -5.0946 -6.4130 24 6 -2.6498 -5.0019 -4.8905 25 6 -0.0976 -4.9023 -0.2050 26 6 1.1804 -4.7490 0.6220 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.9685 -3.5476 0.5965 30 1 3.0474 -3.2648 -1.8657 31 1 2.9669 -4.9871 -1.4227 32 1 1.4039 -4.4708 -3.2772 33 1 0.5994 -3.2522 -2.2598 34 1 0.8118 -6.2324 -1.6351 35 1 -1.7633 -4.9630 -2.1700 36 1 -1.0413 -7.0441 -6.0297 37 1 -1.8948 -8.3538 -5.1654 38 1 -2.9166 -7.5375 -7.4792 39 1 -4.0439 -7.6937 -6.0911 40 1 -3.3623 -4.5274 -4.2157 41 1 -1.7782 -4.3629 -5.0321 42 1 -0.7223 -5.6806 0.2332 43 1 -0.6425 -3.9583 -0.2100 44 1 1.7254 -5.6930 0.6270 45 1 0.9209 -4.4735 1.6442 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026523998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:38 Heat of formation + Delta-G solvation = -109.392933 kcal Electronic energy + Delta-G solvation = -27014.604090 eV Core-core repulsion = 23158.899542 eV Total energy + Delta-G solvation = -3855.704548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.35205 -38.35234 -37.34940 -36.40392 -36.02496 -34.76813 -32.92024 -30.94204 -30.33328 -29.99158 -27.74609 -26.12535 -23.72899 -23.03580 -22.26698 -21.33071 -20.21724 -19.17383 -18.71548 -17.60707 -17.28968 -17.25689 -16.51971 -16.11121 -15.92049 -15.25440 -14.91710 -14.56621 -14.44930 -14.15196 -14.00889 -13.76492 -13.50104 -12.94242 -12.89980 -12.67756 -12.56899 -12.43535 -12.32372 -12.18299 -11.98644 -11.80991 -11.71743 -11.65334 -11.22378 -10.97189 -10.84725 -10.76504 -10.72818 -10.41187 -10.18950 -10.13171 -9.83925 -9.68530 -9.56181 -8.96367 -8.84914 -6.96895 -5.80324 -3.07429 -0.33704 2.10602 2.46019 2.98097 3.25816 3.41154 3.47784 3.49193 3.66395 3.96071 4.04802 4.19593 4.35067 4.46849 4.57716 4.72606 4.99332 5.02875 5.09586 5.15557 5.23615 5.37053 5.42985 5.53965 5.58709 5.65836 5.72687 5.77500 5.92088 5.98425 6.03617 6.12577 6.27765 6.43858 6.52735 6.62075 6.72941 6.84774 6.98168 7.04603 7.45509 7.69328 8.10728 8.39534 9.51041 10.08890 10.43692 11.42672 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.003062 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.320110 B = 9142.982764 C =10402.180345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.119 4.119 13 C 0.148 3.852 14 N -0.717 5.717 15 C 0.523 3.477 16 O -0.536 6.536 17 C -0.104 4.104 18 H 0.118 0.882 19 C -0.102 4.102 20 C -0.588 4.588 21 S 2.394 3.606 22 O -0.931 6.931 23 O -0.937 6.937 24 C -0.594 4.594 25 C -0.123 4.123 26 C -0.118 4.118 27 H 0.253 0.747 28 H 0.383 0.617 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.401 0.599 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 -17.698 -8.049 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.061 3.939 11 C -0.171 4.171 12 C -0.158 4.158 13 C 0.044 3.956 14 N -0.366 5.366 15 C 0.307 3.693 16 O -0.413 6.413 17 C -0.127 4.127 18 H 0.136 0.864 19 C -0.141 4.141 20 C -0.717 4.717 21 S 2.576 3.424 22 O -0.928 6.928 23 O -0.934 6.934 24 C -0.722 4.722 25 C -0.161 4.161 26 C -0.157 4.157 27 H 0.063 0.937 28 H 0.218 0.782 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.235 0.765 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.207 -17.369 -8.926 20.816 hybrid contribution 0.079 0.818 0.722 1.093 sum -7.128 -16.552 -8.205 19.801 Atomic orbital electron populations 1.69651 1.05053 1.25447 1.58227 1.24693 0.95496 0.97569 1.03237 0.86158 0.78840 0.84312 0.77137 1.20616 1.21963 1.21976 1.19306 0.91051 0.84203 1.42011 0.91217 1.42472 1.05663 0.99642 1.88521 1.20252 0.94332 0.86413 0.92885 1.22098 0.96370 0.99696 0.98926 1.21754 0.97047 0.98820 0.98172 1.21119 0.84593 0.99716 0.90152 1.46153 1.15171 1.47709 1.27611 1.20020 0.89137 0.79121 0.80998 1.90726 1.34405 1.46987 1.69144 1.21751 0.98903 0.93345 0.98669 0.86351 1.22053 0.96889 1.02108 0.93036 1.30658 1.07472 1.24786 1.08828 1.09028 0.75783 0.79590 0.77977 1.93646 1.72233 1.74853 1.52108 1.93624 1.29581 1.83549 1.86641 1.30646 1.14941 1.04189 1.22467 1.21744 0.98967 1.01928 0.93496 1.21728 0.95758 0.98939 0.99235 0.93670 0.78237 0.93343 0.91885 0.93679 0.93104 0.90325 0.89981 0.76471 0.88172 0.87800 0.84090 0.84308 0.83277 0.83609 0.92373 0.90414 0.92318 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.09 13.06 55.49 0.72 -26.36 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.23 -6.24 9.93 -15.06 -0.15 -6.39 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -16.73 4.28 -53.43 -0.23 -16.96 16 10 C 0.17 3.18 3.10 -67.93 -0.21 2.97 16 11 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 12 C -0.12 -1.98 5.34 -26.73 -0.14 -2.13 16 13 C 0.15 2.04 2.45 -67.93 -0.17 1.87 16 14 N -0.72 -8.09 4.99 -53.81 -0.27 -8.36 16 15 C 0.52 5.90 6.97 -10.99 -0.08 5.83 16 16 O -0.54 -7.99 15.46 5.55 0.09 -7.90 16 17 C -0.10 -0.73 2.94 -90.71 -0.27 -1.00 16 18 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 19 C -0.10 -0.66 5.27 -25.19 -0.13 -0.79 16 20 C -0.59 -2.77 7.31 38.24 0.28 -2.49 16 21 S 2.39 18.57 6.10 -107.50 -0.66 17.92 16 22 O -0.93 -11.24 18.15 -57.73 -1.05 -12.29 16 23 O -0.94 -10.28 18.15 -57.73 -1.05 -11.32 16 24 C -0.59 -4.05 6.61 37.77 0.25 -3.81 16 25 C -0.12 -1.69 5.22 -26.73 -0.14 -1.83 16 26 C -0.12 -1.77 5.61 -26.73 -0.15 -1.92 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.38 9.28 6.06 -40.82 -0.25 9.03 16 29 H 0.05 0.93 8.08 -51.93 -0.42 0.52 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.51 7.60 -51.93 -0.39 1.12 16 34 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 35 H 0.40 3.66 8.53 -40.82 -0.35 3.31 16 36 H 0.10 0.78 7.72 -51.92 -0.40 0.38 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.14 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.14 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.15 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.15 1.15 7.88 -51.93 -0.41 0.75 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.21 6.51 -51.93 -0.34 0.88 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -36.67 368.58 -10.21 -46.87 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.15 Total: 8.42 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -1.15 Total: -12.57 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.23 Total: -51.68 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -2.01 Total: -31.51 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 18.57 SS G_CDS: -0.66 Total: 17.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.67 -10.21 -46.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026523998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.519 kcal (2) G-P(sol) polarization free energy of solvation -36.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds