Wall clock time and date at job start Tue Mar 31 2020 04:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86792 * 120.00238 * 2 1 4 4 H 1.48495 * 109.47566 * 272.62469 * 3 2 1 5 5 H 1.48501 * 109.47416 * 32.62820 * 3 2 1 6 6 H 1.48500 * 109.47068 * 152.62612 * 3 2 1 7 7 C 1.38818 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00295 * 342.15400 * 7 2 1 9 9 N 1.36936 * 119.99953 * 162.15491 * 7 2 1 10 10 C 1.47431 * 125.64567 * 325.28104 * 9 7 2 11 11 C 1.54913 * 104.82803 * 155.89106 * 10 9 7 12 12 C 1.55157 * 101.58307 * 37.01116 * 11 10 9 13 13 C 1.47024 * 125.64913 * 145.30439 * 9 7 2 14 14 H 1.08994 * 110.00823 * 300.52750 * 13 9 7 15 15 C 1.53000 * 109.88182 * 61.62395 * 13 9 7 16 16 N 1.46500 * 109.47068 * 295.70089 * 15 13 9 17 17 C 1.34771 * 120.00303 * 173.18295 * 16 15 13 18 18 O 1.21282 * 119.99757 * 0.27868 * 17 16 15 19 19 C 1.50697 * 120.00293 * 180.27227 * 17 16 15 20 20 H 1.08996 * 109.55060 * 325.19720 * 19 17 16 21 21 C 1.53036 * 109.54990 * 85.48597 * 19 17 16 22 22 C 1.52588 * 109.98859 * 183.50801 * 21 19 17 23 23 C 1.52593 * 110.63871 * 290.00648 * 22 21 19 24 24 C 1.53041 * 109.98076 * 69.99060 * 23 22 21 25 25 S 1.81665 * 109.55195 * 205.00105 * 19 17 16 26 26 O 1.42100 * 108.66375 * 300.17511 * 25 19 17 27 27 O 1.42104 * 108.66491 * 71.42331 * 25 19 17 28 28 H 0.97002 * 120.00126 * 359.97438 * 1 2 3 29 29 H 1.08993 * 110.36722 * 37.05960 * 10 9 7 30 30 H 1.08996 * 110.45834 * 274.77399 * 10 9 7 31 31 H 1.08996 * 111.00854 * 278.93398 * 11 10 9 32 32 H 1.09002 * 110.99905 * 155.07945 * 11 10 9 33 33 H 1.09001 * 110.71797 * 206.13186 * 12 11 10 34 34 H 1.08997 * 110.72123 * 82.85794 * 12 11 10 35 35 H 1.08994 * 109.46967 * 175.70131 * 15 13 9 36 36 H 1.09003 * 109.46943 * 55.69927 * 15 13 9 37 37 H 0.97002 * 119.99709 * 353.45982 * 16 15 13 38 38 H 1.09000 * 109.38241 * 303.66007 * 21 19 17 39 39 H 1.09001 * 109.38585 * 63.34379 * 21 19 17 40 40 H 1.08999 * 109.24332 * 169.71803 * 22 21 19 41 41 H 1.08999 * 109.21239 * 50.28725 * 22 21 19 42 42 H 1.08993 * 109.38705 * 309.83446 * 23 22 21 43 43 H 1.08997 * 109.29978 * 190.08811 * 23 22 21 44 44 H 1.09005 * 109.54500 * 176.49731 * 24 23 22 45 45 H 1.08998 * 109.55636 * 56.20651 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4422 2.0784 -1.3985 5 1 1.4766 2.6360 0.7549 6 1 3.5744 1.4246 0.6438 7 6 2.0101 -1.2023 -0.0005 8 1 1.5091 -2.1152 0.2857 9 7 3.3301 -1.2307 -0.3640 10 6 3.9567 -0.3798 -1.3920 11 6 5.4562 -0.3307 -1.0059 12 6 5.6921 -1.7744 -0.4887 13 6 4.3569 -2.1152 0.2061 14 1 4.4430 -1.9437 1.2790 15 6 3.9904 -3.5767 -0.0594 16 7 2.7484 -3.9044 0.6449 17 6 2.1568 -5.0991 0.4475 18 8 2.6554 -5.9050 -0.3094 19 6 0.8759 -5.4338 1.1674 20 1 0.8881 -4.9859 2.1610 21 6 -0.3146 -4.8911 0.3735 22 6 -1.6109 -5.1481 1.1362 23 6 -1.9428 -6.6375 1.1464 24 6 -0.9471 -7.3891 2.0329 25 16 0.7151 -7.2373 1.3155 26 8 0.7006 -7.8012 0.0113 27 8 1.6659 -7.7023 2.2637 28 1 -0.4850 0.8401 0.0004 29 1 3.5264 0.6213 -1.3698 30 1 3.8338 -0.8231 -2.3802 31 1 5.6328 0.4006 -0.2173 32 1 6.0772 -0.1215 -1.8770 33 1 6.5155 -1.7984 0.2252 34 1 5.8799 -2.4555 -1.3186 35 1 4.7921 -4.2230 0.2979 36 1 3.8517 -3.7278 -1.1300 37 1 2.3497 -3.2599 1.2504 38 1 -0.1902 -3.8188 0.2226 39 1 -0.3602 -5.3884 -0.5954 40 1 -2.4238 -4.6023 0.6572 41 1 -1.4988 -4.7980 2.1624 42 1 -1.8882 -7.0273 0.1301 43 1 -2.9514 -6.7791 1.5347 44 1 -1.2272 -8.4412 2.0850 45 1 -0.9529 -6.9586 3.0342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027928660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:09 Heat of formation + Delta-G solvation = -81.947152 kcal Electronic energy + Delta-G solvation = -28033.692365 eV Core-core repulsion = 24179.177955 eV Total energy + Delta-G solvation = -3854.514410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -39.68337 -38.05680 -37.24710 -36.51110 -35.87865 -34.17513 -32.77057 -32.12854 -30.06898 -29.53152 -27.97392 -25.10521 -24.27423 -23.44010 -21.10049 -21.06046 -20.13853 -19.72109 -18.72130 -17.71645 -16.79222 -16.71313 -16.30802 -16.06210 -15.56304 -15.21556 -15.05888 -14.62755 -14.55327 -14.02259 -13.83257 -13.56466 -13.28190 -13.18300 -12.83936 -12.57891 -12.39353 -12.06176 -12.03490 -11.92476 -11.87276 -11.61135 -11.45559 -11.41511 -11.36004 -11.02403 -10.98565 -10.81156 -10.61208 -10.54668 -10.28963 -10.17040 -9.91619 -9.62866 -9.58800 -8.71262 -8.52847 -6.97501 -6.14540 -3.57288 -0.03778 2.66568 2.81420 3.22279 3.31108 3.36751 3.41144 3.88396 3.96351 4.39187 4.42829 4.46734 4.65327 4.72750 4.82614 4.84466 5.01482 5.05481 5.13796 5.26105 5.34231 5.36424 5.40475 5.45670 5.67836 5.70706 5.75380 5.87175 5.94868 6.02536 6.05601 6.09904 6.19841 6.25139 6.27301 6.33372 6.50560 6.76362 6.78864 6.87173 7.72450 7.85584 8.16200 8.46874 8.66366 9.50793 10.10108 10.99745 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.004212 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.983116 B = 6645.754518 C = 7981.006555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.035 3.965 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.091 0.909 9 N -0.602 5.602 10 C 0.116 3.884 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.143 3.857 14 H 0.049 0.951 15 C 0.112 3.888 16 N -0.692 5.692 17 C 0.537 3.463 18 O -0.542 6.542 19 C -0.598 4.598 20 H 0.151 0.849 21 C -0.102 4.102 22 C -0.137 4.137 23 C -0.112 4.112 24 C -0.610 4.610 25 S 2.443 3.557 26 O -0.910 6.910 27 O -0.940 6.940 28 H 0.265 0.735 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.415 0.585 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.133 0.867 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 -8.285 4.701 9.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.166 4.166 3 Si 0.723 3.277 4 H -0.215 1.215 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.385 4.385 8 H 0.109 0.891 9 N -0.328 5.328 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.067 0.933 15 C -0.014 4.014 16 N -0.344 5.344 17 C 0.320 3.680 18 O -0.421 6.421 19 C -0.708 4.708 20 H 0.169 0.831 21 C -0.141 4.141 22 C -0.174 4.174 23 C -0.150 4.150 24 C -0.739 4.739 25 S 2.621 3.379 26 O -0.907 6.907 27 O -0.937 6.937 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.254 0.746 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.151 0.849 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.200 -9.375 3.988 10.190 hybrid contribution -0.433 2.088 0.634 2.225 sum -0.233 -7.286 4.622 8.632 Atomic orbital electron populations 1.69779 1.05713 1.26936 1.51826 1.25387 0.95207 0.97948 0.98104 0.86698 0.79947 0.83985 0.77023 1.21526 1.23275 1.19509 1.18649 0.82518 0.94014 1.43335 0.89150 1.44698 1.05433 1.43088 1.39569 1.21910 0.90892 0.95204 0.92783 1.22778 0.97486 0.96662 1.00495 1.22489 0.96405 0.96981 1.00083 1.21283 0.89038 0.89172 0.96950 0.93287 1.22066 0.84668 0.97148 0.97505 1.46088 1.25991 1.16033 1.46243 1.19090 0.83579 0.83316 0.82030 1.90822 1.65002 1.48812 1.37474 1.30597 1.02756 1.28162 1.09258 0.83092 1.21330 0.88860 1.05771 0.98094 1.21692 0.98212 0.95355 1.02132 1.21346 0.99091 0.94846 0.99732 1.30351 1.21917 1.09885 1.11742 1.07676 0.77259 0.76972 0.75975 1.93576 1.85882 1.73786 1.37487 1.93562 1.58295 1.77815 1.64078 0.92546 0.94032 0.95008 0.91596 0.91481 0.91302 0.91153 0.92397 0.91191 0.74614 0.87255 0.89384 0.88972 0.90488 0.89608 0.89541 0.84857 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.97 13.97 55.49 0.78 -24.19 16 2 C 0.03 0.91 5.45 -17.43 -0.10 0.82 16 3 Si 0.89 21.19 24.82 -169.99 -4.22 16.97 16 4 H -0.29 -6.81 6.76 56.52 0.38 -6.43 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.27 -6.25 7.08 56.52 0.40 -5.85 16 7 C -0.26 -6.36 9.54 -15.06 -0.14 -6.50 16 8 H 0.09 2.23 5.49 -52.48 -0.29 1.94 16 9 N -0.60 -13.03 2.70 -162.57 -0.44 -13.46 16 10 C 0.12 2.36 6.25 -2.52 -0.02 2.34 16 11 C -0.14 -2.18 7.08 -24.58 -0.17 -2.35 16 12 C -0.12 -1.79 6.48 -24.89 -0.16 -1.95 16 13 C 0.14 2.54 3.30 -66.95 -0.22 2.32 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.11 1.98 5.16 -4.04 -0.02 1.96 16 16 N -0.69 -12.38 4.35 -60.30 -0.26 -12.64 16 17 C 0.54 9.82 6.96 -10.99 -0.08 9.74 16 18 O -0.54 -11.71 15.45 -9.60 -0.15 -11.86 16 19 C -0.60 -8.37 2.80 -27.87 -0.08 -8.45 16 20 H 0.15 1.60 8.14 -51.93 -0.42 1.17 16 21 C -0.10 -1.37 5.00 -26.92 -0.13 -1.50 16 22 C -0.14 -1.35 5.63 -27.15 -0.15 -1.50 16 23 C -0.11 -0.96 5.73 -26.92 -0.15 -1.12 16 24 C -0.61 -5.31 6.35 37.18 0.24 -5.07 16 25 S 2.44 34.16 4.31 -107.50 -0.46 33.69 16 26 O -0.91 -16.07 17.05 -64.34 -1.10 -17.17 16 27 O -0.94 -15.84 18.11 -57.82 -1.05 -16.89 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.04 0.92 3.05 -51.93 -0.16 0.76 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 37 H 0.41 7.26 6.33 -40.82 -0.26 7.01 16 38 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.09 1.23 8.01 -51.93 -0.42 0.81 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 42 H 0.09 0.77 8.01 -51.93 -0.42 0.35 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.13 0.93 8.14 -51.92 -0.42 0.50 16 45 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -34.87 358.40 -9.71 -44.58 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.02 Total: 6.83 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.19 Total: -11.26 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.07 Total: -50.30 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -2.29 Total: -45.92 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.22 Total: 16.97 kcal Atomic # 16 Polarization: 34.16 SS G_CDS: -0.46 Total: 33.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.87 -9.71 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027928660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.368 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds