Wall clock time and date at job start Tue Mar 31 2020 04:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99892 * 2 1 4 4 H 1.48502 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47361 * 299.99753 * 3 2 1 6 6 H 1.48503 * 109.47440 * 60.00038 * 3 2 1 7 7 C 1.38808 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00163 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64112 * 0.05504 * 9 7 2 11 11 C 1.54918 * 104.82827 * 204.07745 * 10 9 7 12 12 C 1.55157 * 101.58155 * 322.99497 * 11 10 9 13 13 H 1.08993 * 110.71794 * 277.13272 * 12 11 10 14 14 C 1.53003 * 110.71670 * 154.03903 * 12 11 10 15 15 N 1.46503 * 109.46823 * 174.99738 * 14 12 11 16 16 C 1.34777 * 119.99650 * 180.02562 * 15 14 12 17 17 O 1.21277 * 120.00252 * 359.97438 * 16 15 14 18 18 C 1.50709 * 119.99664 * 180.02562 * 16 15 14 19 19 H 1.09001 * 109.54608 * 39.80437 * 18 16 15 20 20 C 1.53030 * 109.54835 * 279.51670 * 18 16 15 21 21 C 1.52587 * 109.98484 * 176.49624 * 20 18 16 22 22 C 1.52589 * 110.64176 * 69.98753 * 21 20 18 23 23 C 1.53044 * 109.98472 * 290.01045 * 22 21 20 24 24 S 1.81668 * 108.99407 * 63.65062 * 23 22 21 25 25 O 1.42108 * 108.66045 * 191.37449 * 24 23 22 26 26 O 1.42098 * 108.66845 * 60.03016 * 24 23 22 27 27 C 1.47015 * 125.65004 * 179.97438 * 9 7 2 28 28 H 0.96999 * 120.00120 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.36633 * 85.25018 * 10 9 7 30 30 H 1.08996 * 110.37033 * 322.91399 * 10 9 7 31 31 H 1.09001 * 111.00522 * 204.91555 * 11 10 9 32 32 H 1.09000 * 110.99891 * 81.06585 * 11 10 9 33 33 H 1.08997 * 109.47096 * 294.99747 * 14 12 11 34 34 H 1.09006 * 109.46950 * 55.00002 * 14 12 11 35 35 H 0.97003 * 120.00143 * 359.97438 * 15 14 12 36 36 H 1.09000 * 109.38679 * 296.65253 * 20 18 16 37 37 H 1.08997 * 109.38772 * 56.34117 * 20 18 16 38 38 H 1.08997 * 109.24357 * 309.68342 * 21 20 18 39 39 H 1.09000 * 109.24301 * 190.28312 * 21 20 18 40 40 H 1.09003 * 109.38842 * 169.85982 * 22 21 20 41 41 H 1.08999 * 109.38838 * 50.16766 * 22 21 20 42 42 H 1.08996 * 109.54834 * 303.79475 * 23 22 21 43 43 H 1.09003 * 109.54987 * 183.50299 * 23 22 21 44 44 H 1.09000 * 109.88350 * 59.57113 * 27 9 7 45 45 H 1.08997 * 110.01690 * 298.47629 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1415 -2.5331 0.0011 11 6 -0.4019 -3.9321 0.6136 12 6 0.7784 -4.7524 0.0294 13 1 0.5462 -5.0985 -0.9777 14 6 1.1199 -5.9334 0.9403 15 7 2.1539 -6.7556 0.3068 16 6 2.6142 -7.8580 0.9307 17 8 2.1728 -8.1692 2.0166 18 6 3.6783 -8.7035 0.2793 19 1 4.4118 -8.0581 -0.2040 20 6 3.0359 -9.6219 -0.7627 21 6 4.1141 -10.4203 -1.4895 22 6 4.7374 -11.4551 -0.5573 23 6 5.5834 -10.7559 0.5093 24 16 4.5008 -9.7221 1.5387 25 8 5.3109 -8.8796 2.3470 26 8 3.5288 -10.5551 2.1556 27 6 1.9318 -3.7275 0.0017 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5269 -2.4874 -1.0175 30 1 -0.5995 -1.7585 0.6162 31 1 -1.3591 -4.3326 0.2800 32 1 -0.3526 -3.8973 1.7019 33 1 1.4873 -5.5605 1.8963 34 1 0.2265 -6.5359 1.1043 35 1 2.5066 -6.5069 -0.5619 36 1 2.3502 -10.3084 -0.2662 37 1 2.4835 -9.0199 -1.4841 38 1 4.8896 -9.7398 -1.8408 39 1 3.6692 -10.9291 -2.3447 40 1 5.3694 -12.1290 -1.1357 41 1 3.9471 -12.0289 -0.0734 42 1 6.3343 -10.1302 0.0269 43 1 6.0748 -11.5030 1.1326 44 1 2.5583 -3.8507 0.8851 45 1 2.5298 -3.8664 -0.8989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028588186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:18 Heat of formation + Delta-G solvation = -88.296756 kcal Electronic energy + Delta-G solvation = -26793.831905 eV Core-core repulsion = 22939.042156 eV Total energy + Delta-G solvation = -3854.789749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -40.14882 -37.90993 -37.56270 -36.90806 -36.18683 -34.83298 -32.87304 -32.25685 -29.90022 -28.79383 -27.97865 -25.61866 -24.56486 -23.44112 -21.55807 -21.07553 -20.08414 -19.80608 -19.04733 -17.82660 -17.24442 -16.86574 -16.60478 -16.05721 -15.80314 -15.48411 -15.26571 -14.76648 -14.61481 -14.36561 -14.29332 -13.76006 -13.56719 -13.45317 -12.84119 -12.55155 -12.44266 -12.25302 -12.22862 -12.10625 -11.88598 -11.82875 -11.77086 -11.55773 -11.51419 -11.01959 -10.97988 -10.84166 -10.64902 -10.50122 -10.22395 -10.07419 -10.02250 -9.81869 -9.55386 -9.14928 -8.68207 -6.86799 -5.68476 -3.10352 -0.39083 2.25690 2.36936 2.79465 3.38015 3.43647 3.46097 3.49549 3.59262 3.98872 4.03187 4.15749 4.28274 4.36558 4.45731 4.49654 4.68646 4.86496 4.98695 5.03583 5.18441 5.20018 5.23341 5.34229 5.39524 5.43925 5.49156 5.59716 5.64648 5.82341 5.99188 6.04077 6.25780 6.30906 6.49952 6.54123 6.65495 6.85135 7.25122 7.47508 7.60219 7.82516 7.91885 8.33409 9.19142 9.80024 10.44312 11.35621 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.002484 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.000771 B =11271.027553 C =11548.919235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.128 3.872 15 N -0.709 5.709 16 C 0.539 3.461 17 O -0.527 6.527 18 C -0.610 4.610 19 H 0.156 0.844 20 C -0.100 4.100 21 C -0.139 4.139 22 C -0.113 4.113 23 C -0.612 4.612 24 S 2.445 3.555 25 O -0.930 6.930 26 O -0.908 6.908 27 C 0.140 3.860 28 H 0.252 0.748 29 H 0.012 0.988 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.404 0.596 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.025 0.975 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.244 -24.261 -5.587 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.005 3.995 15 N -0.360 5.360 16 C 0.321 3.679 17 O -0.404 6.404 18 C -0.718 4.718 19 H 0.174 0.826 20 C -0.138 4.138 21 C -0.177 4.177 22 C -0.151 4.151 23 C -0.741 4.741 24 S 2.622 3.378 25 O -0.927 6.927 26 O -0.905 6.905 27 C 0.014 3.986 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.239 0.761 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.043 0.957 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 7.770 -24.201 -3.893 25.714 hybrid contribution 0.946 1.116 -1.504 2.098 sum 8.716 -23.085 -5.398 25.259 Atomic orbital electron populations 1.69804 1.04904 1.24711 1.57660 1.24797 0.95749 0.97776 1.02389 0.85989 0.78649 0.83538 0.77264 1.20524 1.21761 1.21679 1.19125 0.90530 0.82457 1.43021 0.90467 1.44510 1.01997 0.99708 1.86840 1.21940 0.84662 0.92520 0.98182 1.23018 0.95431 0.98556 1.00446 1.22453 0.98491 0.93899 0.98555 0.90518 1.21620 0.90002 0.91070 0.96835 1.45954 1.41414 1.25408 1.23178 1.19117 0.82179 0.81264 0.85294 1.90883 1.58924 1.70412 1.20144 1.30735 1.10069 1.12705 1.18311 0.82572 1.21306 0.98669 0.97357 0.96481 1.21724 0.98515 0.98142 0.99287 1.21323 0.99316 0.98548 0.95905 1.30382 1.14611 1.15233 1.13850 1.07717 0.76612 0.76916 0.76542 1.93606 1.68908 1.67088 1.63084 1.93588 1.59330 1.66486 1.71099 1.21340 0.93425 0.86038 0.97778 0.93744 0.97001 0.87468 0.92043 0.91712 0.90659 0.91079 0.76093 0.88979 0.88888 0.90312 0.89098 0.89266 0.89464 0.84740 0.84478 0.95704 0.96452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.09 55.49 0.56 -26.18 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.60 -15.26 3.39 -170.07 -0.58 -15.84 16 10 C 0.15 3.61 5.89 -2.52 -0.01 3.59 16 11 C -0.14 -2.45 6.53 -24.58 -0.16 -2.61 16 12 C -0.11 -1.83 2.95 -88.78 -0.26 -2.09 16 13 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.13 1.83 5.02 -4.04 -0.02 1.81 16 15 N -0.71 -8.55 5.47 -60.29 -0.33 -8.88 16 16 C 0.54 7.07 7.01 -10.98 -0.08 7.00 16 17 O -0.53 -9.25 15.42 -9.30 -0.14 -9.40 16 18 C -0.61 -5.17 2.81 -27.86 -0.08 -5.24 16 19 H 0.16 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.10 -0.58 5.00 -26.93 -0.13 -0.71 16 21 C -0.14 -0.46 5.63 -27.15 -0.15 -0.62 16 22 C -0.11 -0.44 5.73 -26.92 -0.15 -0.59 16 23 C -0.61 -3.02 6.35 37.18 0.24 -2.78 16 24 S 2.45 25.28 4.25 -107.50 -0.46 24.83 16 25 O -0.93 -13.36 18.10 -57.81 -1.05 -14.40 16 26 O -0.91 -12.71 17.11 -64.25 -1.10 -13.81 16 27 C 0.14 2.79 6.76 -3.07 -0.02 2.77 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 33 H 0.08 1.22 7.94 -51.93 -0.41 0.80 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.40 3.78 8.47 -40.82 -0.35 3.43 16 36 H 0.09 0.61 8.01 -51.93 -0.42 0.20 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.16 8.09 -51.93 -0.42 -0.26 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.09 0.37 8.01 -51.93 -0.42 -0.04 16 42 H 0.13 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.03 0.51 7.70 -51.93 -0.40 0.11 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -38.23 367.99 -10.99 -49.22 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.33 Total: -1.82 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.09 Total: -6.25 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.35 Total: -50.90 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -2.29 Total: -37.61 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 25.28 SS G_CDS: -0.46 Total: 24.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.23 -10.99 -49.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028588186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.074 kcal (2) G-P(sol) polarization free energy of solvation -38.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds