Wall clock time and date at job start Tue Mar 31 2020 04:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00378 * 2 1 4 4 H 1.48503 * 109.46780 * 240.00053 * 3 2 1 5 5 H 1.48493 * 109.47040 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47058 * 120.00006 * 3 2 1 7 7 C 1.38819 * 119.99422 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99884 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.65026 * 0.04571 * 9 7 2 11 11 C 1.54323 * 107.26890 * 181.02083 * 10 9 7 12 12 C 1.55161 * 102.94579 * 22.19224 * 11 10 9 13 13 H 1.08999 * 111.03664 * 82.58317 * 12 11 10 14 14 C 1.52995 * 111.00518 * 206.42151 * 12 11 10 15 15 N 1.46501 * 109.47062 * 178.64630 * 14 12 11 16 16 C 1.34777 * 119.99677 * 180.02562 * 15 14 12 17 17 O 1.21281 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99732 * 180.02562 * 16 15 14 19 19 H 1.08998 * 109.62713 * 325.23927 * 18 16 15 20 20 C 1.53038 * 109.55240 * 85.48136 * 18 16 15 21 21 C 1.52592 * 109.98748 * 183.50370 * 20 18 16 22 22 C 1.52578 * 110.64169 * 290.01239 * 21 20 18 23 23 C 1.53039 * 109.98761 * 69.98919 * 22 21 20 24 24 S 1.81669 * 108.99661 * 296.34777 * 23 22 21 25 25 O 1.42099 * 108.66329 * 168.62618 * 24 23 22 26 26 O 1.42101 * 108.66667 * 299.97137 * 24 23 22 27 27 C 1.47431 * 125.64691 * 179.97438 * 9 7 2 28 28 H 0.97004 * 119.99154 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.87971 * 300.43905 * 10 9 7 30 30 H 1.08997 * 109.88477 * 61.44861 * 10 9 7 31 31 H 1.09002 * 110.72110 * 263.82778 * 11 10 9 32 32 H 1.09001 * 110.72057 * 140.55819 * 11 10 9 33 33 H 1.09014 * 109.46885 * 58.64943 * 14 12 11 34 34 H 1.09000 * 109.47282 * 298.65252 * 14 12 11 35 35 H 0.96999 * 120.00125 * 0.02562 * 15 14 12 36 36 H 1.08997 * 109.38914 * 63.34599 * 20 18 16 37 37 H 1.09007 * 109.29774 * 303.60264 * 20 18 16 38 38 H 1.09000 * 109.23905 * 169.70841 * 21 20 18 39 39 H 1.09010 * 109.24114 * 50.31229 * 21 20 18 40 40 H 1.09000 * 109.39171 * 309.82771 * 22 21 20 41 41 H 1.09005 * 109.38396 * 190.14391 * 22 21 20 42 42 H 1.09004 * 109.55334 * 176.49976 * 23 22 21 43 43 H 1.09003 * 109.55142 * 56.20411 * 23 22 21 44 44 H 1.09002 * 110.36425 * 37.06826 * 27 9 7 45 45 H 1.08996 * 110.45854 * 274.79775 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2024 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 -0.1377 -2.5327 0.0013 11 6 -0.4487 -4.0440 0.0291 12 6 0.8515 -4.6557 0.6145 13 1 0.8567 -4.5956 1.7029 14 6 1.0366 -6.1008 0.1472 15 7 2.2876 -6.6338 0.6921 16 6 2.6606 -7.8980 0.4106 17 8 1.9609 -8.5941 -0.2941 18 6 3.9473 -8.4465 0.9716 19 1 4.6934 -7.6534 1.0193 20 6 3.6984 -9.0008 2.3762 21 6 5.0116 -9.4800 2.9880 22 6 5.5079 -10.7371 2.2799 23 6 5.9732 -10.3905 0.8637 24 16 4.5526 -9.7873 -0.0945 25 8 5.0295 -9.2229 -1.3083 26 8 3.5679 -10.8107 -0.1413 27 6 1.9332 -3.7313 0.0017 28 1 -0.4849 0.8401 0.0004 29 1 -0.5579 -2.0514 0.8844 30 1 -0.5545 -2.0826 -0.8996 31 1 -0.6317 -4.4187 -0.9780 32 1 -1.2989 -4.2509 0.6790 33 1 1.0737 -6.1284 -0.9420 34 1 0.2005 -6.7059 0.4977 35 1 2.8475 -6.0770 1.2554 36 1 3.0008 -9.8362 2.3172 37 1 3.2723 -8.2170 3.0025 38 1 4.8566 -9.7000 4.0443 39 1 5.7607 -8.6939 2.8917 40 1 4.6989 -11.4657 2.2267 41 1 6.3402 -11.1632 2.8401 42 1 6.3835 -11.2806 0.3865 43 1 6.7376 -9.6148 0.9105 44 1 2.8329 -3.7404 0.6170 45 1 2.1673 -4.0436 -1.0159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028588187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:30 Heat of formation + Delta-G solvation = -89.370406 kcal Electronic energy + Delta-G solvation = -26807.996351 eV Core-core repulsion = 22953.160045 eV Total energy + Delta-G solvation = -3854.836306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -40.14038 -37.90846 -37.55190 -36.90613 -36.19466 -34.82074 -32.85126 -32.25401 -29.90357 -28.79779 -27.98606 -25.61922 -24.55608 -23.44441 -21.54866 -21.04990 -20.00154 -19.90284 -19.05715 -17.83717 -17.24215 -16.84165 -16.60192 -16.05484 -15.80184 -15.46590 -15.23315 -14.70334 -14.59490 -14.37710 -14.27595 -13.78771 -13.52772 -13.47199 -13.01554 -12.44265 -12.39710 -12.26220 -12.23532 -12.11972 -12.02070 -11.87408 -11.78038 -11.50307 -11.44758 -11.01789 -10.93812 -10.80847 -10.65297 -10.49867 -10.23453 -10.10928 -9.93847 -9.85377 -9.68731 -9.14549 -8.62596 -6.86767 -5.74128 -3.07964 -0.39403 2.25091 2.37347 2.79766 3.38068 3.42461 3.43902 3.49238 3.59203 3.99458 4.04088 4.16162 4.28959 4.37619 4.46273 4.50334 4.69571 4.87391 4.99327 5.03547 5.17704 5.21544 5.24492 5.36000 5.40846 5.45541 5.50157 5.61171 5.63266 5.83698 5.97305 5.99848 6.27147 6.30099 6.43930 6.49015 6.61635 6.85793 7.26208 7.52473 7.60078 7.79758 7.92314 8.23190 9.19014 9.79367 10.45272 11.37538 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021151 B = 0.002537 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.505629 B =11032.042767 C =11456.702539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.128 3.872 15 N -0.709 5.709 16 C 0.538 3.462 17 O -0.526 6.526 18 C -0.609 4.609 19 H 0.156 0.844 20 C -0.099 4.099 21 C -0.139 4.139 22 C -0.113 4.113 23 C -0.611 4.611 24 S 2.444 3.556 25 O -0.931 6.931 26 O -0.907 6.907 27 C 0.141 3.859 28 H 0.253 0.747 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.405 0.595 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.035 0.965 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.930 -21.462 8.466 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.005 3.995 15 N -0.359 5.359 16 C 0.320 3.680 17 O -0.403 6.403 18 C -0.718 4.718 19 H 0.173 0.827 20 C -0.137 4.137 21 C -0.177 4.177 22 C -0.151 4.151 23 C -0.740 4.740 24 S 2.620 3.380 25 O -0.928 6.928 26 O -0.904 6.904 27 C 0.014 3.986 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.240 0.760 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.053 0.947 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 10.008 -21.965 7.141 25.171 hybrid contribution 1.207 1.689 1.000 2.304 sum 11.214 -20.276 8.141 24.559 Atomic orbital electron populations 1.69958 1.04897 1.25192 1.56869 1.24815 0.95735 0.97712 1.02168 0.86187 0.78446 0.83153 0.77884 1.21145 1.21575 1.21189 1.19004 0.90378 0.82444 1.44110 0.90540 1.44465 1.01733 0.99804 1.87223 1.21155 0.84291 0.88138 1.01194 1.22864 0.95313 0.99394 0.99773 1.22630 0.98854 0.91772 1.00552 0.90129 1.21551 0.84691 0.94035 0.99240 1.45956 1.25114 1.12819 1.52016 1.19119 0.85272 0.82668 0.80893 1.90885 1.54019 1.57747 1.37660 1.30708 1.06906 1.20334 1.13808 0.82661 1.21304 0.99251 1.02855 0.90338 1.21725 0.96677 0.97714 1.01566 1.21321 1.02999 0.98878 0.91891 1.30372 1.19861 1.13099 1.10675 1.07762 0.77222 0.76841 0.76140 1.93606 1.81236 1.78705 1.39223 1.93594 1.57030 1.54275 1.85512 1.21583 0.93877 0.86254 0.96846 0.93666 0.93540 0.93815 0.92086 0.91891 0.90811 0.91146 0.75992 0.88949 0.88877 0.89089 0.90298 0.89463 0.89263 0.84478 0.84719 0.94719 0.96181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.31 55.49 0.57 -26.34 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.61 -15.18 3.39 -170.06 -0.58 -15.76 16 10 C 0.18 4.22 5.38 -3.06 -0.02 4.20 16 11 C -0.13 -2.40 6.42 -24.89 -0.16 -2.56 16 12 C -0.12 -1.89 3.11 -88.46 -0.27 -2.16 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 14 C 0.13 1.80 5.12 -4.04 -0.02 1.78 16 15 N -0.71 -8.54 5.41 -60.29 -0.33 -8.87 16 16 C 0.54 7.01 6.96 -10.99 -0.08 6.93 16 17 O -0.53 -9.10 15.47 -9.60 -0.15 -9.25 16 18 C -0.61 -5.17 2.80 -27.86 -0.08 -5.25 16 19 H 0.16 0.78 8.14 -51.93 -0.42 0.35 16 20 C -0.10 -0.59 5.00 -26.92 -0.13 -0.73 16 21 C -0.14 -0.49 5.63 -27.16 -0.15 -0.64 16 22 C -0.11 -0.44 5.73 -26.93 -0.15 -0.60 16 23 C -0.61 -3.02 6.35 37.18 0.24 -2.79 16 24 S 2.44 25.09 4.32 -107.50 -0.46 24.62 16 25 O -0.93 -13.20 18.10 -57.81 -1.05 -14.25 16 26 O -0.91 -12.65 17.05 -64.34 -1.10 -13.74 16 27 C 0.14 2.75 6.41 -2.52 -0.02 2.74 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 29 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 30 H 0.04 1.16 7.50 -51.93 -0.39 0.78 16 31 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.13 8.10 -51.92 -0.42 0.71 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.41 3.90 8.34 -40.82 -0.34 3.56 16 36 H 0.09 0.63 8.01 -51.93 -0.42 0.22 16 37 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.08 0.17 8.09 -51.92 -0.42 -0.25 16 40 H 0.09 0.38 8.01 -51.93 -0.42 -0.04 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -38.24 368.63 -11.05 -49.29 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.39 Total: -2.21 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.10 Total: -5.92 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.33 Total: -50.96 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -2.29 Total: -37.24 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 25.09 SS G_CDS: -0.46 Total: 24.62 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.24 -11.05 -49.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028588187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.080 kcal (2) G-P(sol) polarization free energy of solvation -38.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds