Wall clock time and date at job start Tue Mar 31 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48503 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47165 * 299.99639 * 3 2 1 6 6 H 1.48493 * 109.47465 * 60.00037 * 3 2 1 7 7 C 1.38813 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99895 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00564 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64542 * 359.69503 * 9 7 2 11 11 C 1.54910 * 104.83231 * 156.13438 * 10 9 7 12 12 C 1.55160 * 101.58122 * 37.00939 * 11 10 9 13 13 H 1.09003 * 110.87062 * 82.93498 * 12 11 10 14 14 C 1.52996 * 110.71864 * 206.13184 * 12 11 10 15 15 N 1.46498 * 109.47108 * 179.97438 * 14 12 11 16 16 C 1.34780 * 120.00246 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99827 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00135 * 180.02562 * 16 15 14 19 19 H 1.09003 * 109.54985 * 39.80614 * 18 16 15 20 20 C 1.53036 * 109.54762 * 279.51604 * 18 16 15 21 21 C 1.52586 * 109.98363 * 176.49502 * 20 18 16 22 22 C 1.52588 * 110.64022 * 69.98756 * 21 20 18 23 23 C 1.53031 * 109.98757 * 290.00923 * 22 21 20 24 24 S 1.81668 * 108.99682 * 63.65120 * 23 22 21 25 25 O 1.42103 * 108.66383 * 191.37041 * 24 23 22 26 26 O 1.42103 * 108.74920 * 60.06246 * 24 23 22 27 27 C 1.47026 * 125.65326 * 180.02562 * 9 7 2 28 28 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.36478 * 274.97390 * 10 9 7 30 30 H 1.08998 * 110.36859 * 37.29768 * 10 9 7 31 31 H 1.08991 * 111.00552 * 278.93287 * 11 10 9 32 32 H 1.09002 * 111.00267 * 155.08153 * 11 10 9 33 33 H 1.09003 * 109.47550 * 299.97884 * 14 12 11 34 34 H 1.09000 * 109.47105 * 59.97868 * 14 12 11 35 35 H 0.96999 * 120.00294 * 0.02562 * 15 14 12 36 36 H 1.08993 * 109.38586 * 296.65683 * 20 18 16 37 37 H 1.08999 * 109.38396 * 56.34047 * 20 18 16 38 38 H 1.08999 * 109.24847 * 309.68912 * 21 20 18 39 39 H 1.08998 * 109.21089 * 190.26836 * 21 20 18 40 40 H 1.09001 * 109.38254 * 169.85392 * 22 21 20 41 41 H 1.09002 * 109.30036 * 50.11753 * 22 21 20 42 42 H 1.08992 * 109.55339 * 303.79384 * 23 22 21 43 43 H 1.09002 * 109.54967 * 183.49991 * 23 22 21 44 44 H 1.09004 * 109.87531 * 300.21350 * 27 9 7 45 45 H 1.08996 * 109.88343 * 61.22069 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0064 11 6 -0.4045 -3.9332 -0.6022 12 6 0.7781 -4.7525 -0.0213 13 1 0.5522 -5.0989 0.9872 14 6 1.1186 -5.9328 -0.9333 15 7 2.2370 -6.6858 -0.3604 16 6 2.7123 -7.7749 -0.9965 17 8 2.2138 -8.1317 -2.0430 18 6 3.8625 -8.5499 -0.4069 19 1 3.7428 -8.6138 0.6747 20 6 5.1791 -7.8434 -0.7377 21 6 6.3432 -8.5717 -0.0723 22 6 6.5818 -9.9243 -0.7370 23 6 5.4331 -10.8797 -0.4061 24 16 3.8948 -10.2227 -1.1148 25 8 2.8002 -10.9604 -0.5885 26 8 4.0493 -10.1174 -2.5235 27 6 1.9316 -3.7276 -0.0005 28 1 -0.4850 0.8401 0.0004 29 1 -0.5227 -2.4852 1.0265 30 1 -0.6022 -1.7598 -0.6083 31 1 -0.3599 -3.9007 -1.6907 32 1 -1.3604 -4.3331 -0.2637 33 1 0.2498 -6.5848 -1.0235 34 1 1.3980 -5.5613 -1.9193 35 1 2.6355 -6.4007 0.4767 36 1 5.3254 -7.8381 -1.8177 37 1 5.1398 -6.8165 -0.3745 38 1 6.1153 -8.7251 0.9825 39 1 7.2438 -7.9642 -0.1605 40 1 7.5190 -10.3457 -0.3733 41 1 6.6407 -9.7896 -1.8170 42 1 5.3293 -10.9646 0.6755 43 1 5.6408 -11.8613 -0.8322 44 1 2.5544 -3.8525 -0.8864 45 1 2.5340 -3.8619 0.8978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028588188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:38 Heat of formation + Delta-G solvation = -88.693584 kcal Electronic energy + Delta-G solvation = -26862.240067 eV Core-core repulsion = 23007.433110 eV Total energy + Delta-G solvation = -3854.806957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.14180 -37.90773 -37.56097 -36.90187 -36.19797 -34.82721 -32.86791 -32.25212 -29.91073 -28.78925 -27.96631 -25.62989 -24.55479 -23.44803 -21.52365 -21.07603 -20.08023 -19.78892 -19.04575 -17.84114 -17.23316 -16.87691 -16.62988 -15.99659 -15.78761 -15.56155 -15.04910 -14.98308 -14.67282 -14.31807 -14.17830 -13.77154 -13.59724 -13.43068 -12.86010 -12.56866 -12.42664 -12.25870 -12.23069 -12.07318 -11.89047 -11.82797 -11.73463 -11.54917 -11.47543 -11.01767 -10.99758 -10.85816 -10.62709 -10.54210 -10.21625 -10.07793 -10.02463 -9.83335 -9.56654 -9.14347 -8.69933 -6.88468 -5.69975 -3.12056 -0.39527 2.25591 2.36996 2.80333 3.36323 3.41521 3.44269 3.49843 3.59454 4.01407 4.04752 4.17273 4.30220 4.38856 4.44191 4.51376 4.69808 4.89330 4.99648 5.03966 5.19212 5.24535 5.27079 5.33982 5.44816 5.47599 5.50618 5.63276 5.64827 5.81946 5.99387 6.03723 6.25992 6.29845 6.47727 6.54273 6.64096 6.83710 7.25819 7.46833 7.58112 7.81373 7.92522 8.32011 9.17335 9.78343 10.42838 11.33983 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.002601 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.560497 B =10760.825360 C =11668.609375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.128 3.872 15 N -0.709 5.709 16 C 0.538 3.462 17 O -0.527 6.527 18 C -0.608 4.608 19 H 0.155 0.845 20 C -0.102 4.102 21 C -0.139 4.139 22 C -0.113 4.113 23 C -0.611 4.611 24 S 2.445 3.555 25 O -0.933 6.933 26 O -0.907 6.907 27 C 0.141 3.859 28 H 0.252 0.748 29 H 0.012 0.988 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.405 0.595 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.024 0.976 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.254 -20.911 2.800 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.005 3.995 15 N -0.359 5.359 16 C 0.321 3.679 17 O -0.404 6.404 18 C -0.717 4.717 19 H 0.173 0.827 20 C -0.140 4.140 21 C -0.176 4.176 22 C -0.151 4.151 23 C -0.740 4.740 24 S 2.622 3.378 25 O -0.930 6.930 26 O -0.904 6.904 27 C 0.015 3.985 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.239 0.761 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.042 0.958 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 11.234 -21.301 1.486 24.127 hybrid contribution 1.191 1.327 1.336 2.228 sum 12.425 -19.974 2.822 23.691 Atomic orbital electron populations 1.69802 1.04908 1.24728 1.57545 1.24799 0.95744 0.97778 1.02364 0.85994 0.78606 0.83563 0.77286 1.20552 1.21675 1.21750 1.19107 0.90491 0.82466 1.43152 0.90505 1.44512 1.02009 0.99692 1.86832 1.21945 0.84653 0.92508 0.98223 1.23012 0.95474 0.98514 1.00417 1.22461 0.98494 0.93882 0.98642 0.90455 1.21607 0.87971 0.92328 0.97597 1.45945 1.35672 1.27784 1.26537 1.19127 0.82549 0.81596 0.84600 1.90885 1.59328 1.68204 1.21973 1.30723 1.02855 1.23776 1.14304 0.82697 1.21330 0.88221 1.01077 1.03396 1.21722 0.99336 0.95942 1.00630 1.21331 0.97568 0.93454 1.02782 1.30368 1.19038 1.10765 1.13806 1.07710 0.76998 0.76583 0.76489 1.93588 1.49615 1.68346 1.81456 1.93595 1.85954 1.84892 1.25953 1.21323 0.93447 0.86084 0.97647 0.93721 0.96991 0.87461 0.91721 0.92001 0.91093 0.90706 0.76070 0.88903 0.88647 0.90374 0.89006 0.89249 0.89427 0.84794 0.84500 0.95793 0.96503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.22 -6.13 10.27 -15.06 -0.15 -6.29 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.60 -15.08 3.39 -170.07 -0.58 -15.66 16 10 C 0.15 3.59 5.89 -2.53 -0.01 3.57 16 11 C -0.13 -2.45 6.53 -24.58 -0.16 -2.61 16 12 C -0.12 -1.85 3.02 -88.79 -0.27 -2.11 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 14 C 0.13 1.84 4.99 -4.04 -0.02 1.82 16 15 N -0.71 -8.63 5.40 -60.29 -0.33 -8.95 16 16 C 0.54 7.11 7.01 -10.98 -0.08 7.03 16 17 O -0.53 -9.28 15.42 -9.38 -0.14 -9.42 16 18 C -0.61 -5.21 2.81 -27.86 -0.08 -5.28 16 19 H 0.16 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.10 -0.68 5.00 -26.92 -0.13 -0.82 16 21 C -0.14 -0.55 5.63 -27.15 -0.15 -0.70 16 22 C -0.11 -0.48 5.73 -26.93 -0.15 -0.63 16 23 C -0.61 -2.99 6.35 37.17 0.24 -2.75 16 24 S 2.45 24.87 4.24 -107.50 -0.46 24.41 16 25 O -0.93 -12.77 18.10 -57.82 -1.05 -13.82 16 26 O -0.91 -12.82 17.11 -64.28 -1.10 -13.92 16 27 C 0.14 2.75 6.52 -3.07 -0.02 2.73 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 31 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 35 H 0.40 3.86 8.33 -40.82 -0.34 3.52 16 36 H 0.09 0.72 8.01 -51.93 -0.42 0.30 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.19 8.09 -51.93 -0.42 -0.23 16 39 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.42 8.01 -51.93 -0.42 0.00 16 42 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.14 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.47 7.77 -51.93 -0.40 0.07 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -37.80 367.77 -11.00 -48.80 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -7.33 Total: -1.28 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.09 Total: -6.46 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.34 Total: -50.60 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -2.29 Total: -37.16 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 24.87 SS G_CDS: -0.46 Total: 24.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.80 -11.00 -48.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028588188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.893 kcal (2) G-P(sol) polarization free energy of solvation -37.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds