Wall clock time and date at job start Tue Mar 31 2020 04:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86791 * 120.00309 * 2 1 4 4 H 1.48499 * 109.47548 * 240.00212 * 3 2 1 5 5 H 1.48502 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47144 * 120.00338 * 3 2 1 7 7 C 1.38817 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99946 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64669 * 359.97438 * 9 7 2 11 11 C 1.54332 * 107.26916 * 178.95710 * 10 9 7 12 12 C 1.55150 * 102.94002 * 337.80821 * 11 10 9 13 13 H 1.09005 * 111.00650 * 277.38451 * 12 11 10 14 14 C 1.53010 * 111.00335 * 153.57834 * 12 11 10 15 15 N 1.46499 * 109.47045 * 174.99800 * 14 12 11 16 16 C 1.34775 * 119.99599 * 179.97438 * 15 14 12 17 17 O 1.21279 * 120.00350 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00075 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.54526 * 29.81048 * 18 16 15 20 20 C 1.53029 * 109.55261 * 150.00137 * 18 16 15 21 21 C 1.52590 * 109.98916 * 183.50634 * 20 18 16 22 22 C 1.52587 * 110.63955 * 290.01286 * 21 20 18 23 23 C 1.53036 * 109.98599 * 69.98760 * 22 21 20 24 24 S 1.81672 * 109.54979 * 269.52235 * 18 16 15 25 25 O 1.42094 * 108.66366 * 71.51461 * 24 18 16 26 26 O 1.42104 * 108.66093 * 300.17426 * 24 18 16 27 27 C 1.47424 * 125.64774 * 180.02562 * 9 7 2 28 28 H 0.97003 * 120.00240 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.88134 * 59.54422 * 10 9 7 30 30 H 1.09002 * 109.88142 * 298.37195 * 10 9 7 31 31 H 1.08997 * 110.71506 * 219.44103 * 11 10 9 32 32 H 1.08998 * 110.86655 * 96.24383 * 11 10 9 33 33 H 1.08998 * 109.47257 * 54.99496 * 14 12 11 34 34 H 1.08998 * 109.46705 * 294.99942 * 14 12 11 35 35 H 0.96993 * 120.00216 * 0.02562 * 15 14 12 36 36 H 1.09005 * 109.38854 * 63.34530 * 20 18 16 37 37 H 1.09006 * 109.38278 * 303.66433 * 20 18 16 38 38 H 1.08994 * 109.24282 * 169.71740 * 21 20 18 39 39 H 1.08994 * 109.21034 * 50.29051 * 21 20 18 40 40 H 1.08996 * 109.39015 * 309.82619 * 22 21 20 41 41 H 1.09006 * 109.38512 * 190.14297 * 22 21 20 42 42 H 1.08998 * 109.55557 * 56.20498 * 23 22 21 43 43 H 1.09006 * 109.55130 * 176.49693 * 23 22 21 44 44 H 1.08989 * 110.37107 * 85.27229 * 27 9 7 45 45 H 1.08997 * 110.36656 * 322.94240 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4487 -4.0441 -0.0267 12 6 0.8512 -4.6558 -0.6126 13 1 0.8551 -4.5962 -1.7011 14 6 1.0366 -6.1009 -0.1450 15 7 2.2051 -6.6831 -0.8097 16 6 2.5636 -7.9560 -0.5495 17 8 1.9188 -8.6194 0.2346 18 6 3.7653 -8.5552 -1.2336 19 1 4.4906 -7.7709 -1.4499 20 6 4.4032 -9.6053 -0.3215 21 6 5.6709 -10.1566 -0.9676 22 6 5.3263 -11.0173 -2.1795 23 6 4.7988 -10.1361 -3.3140 24 16 3.2484 -9.3524 -2.7821 25 8 2.9041 -8.3426 -3.7206 26 8 2.3056 -10.3708 -2.4766 27 6 1.9333 -3.7312 -0.0005 28 1 -0.4851 0.8401 0.0004 29 1 -0.5583 -2.0518 -0.8825 30 1 -0.5537 -2.0849 0.9030 31 1 -1.2992 -4.2511 -0.6762 32 1 -0.6328 -4.4208 0.9794 33 1 0.1488 -6.6809 -0.3967 34 1 1.1871 -6.1169 0.9344 35 1 2.7210 -6.1524 -1.4366 36 1 3.6971 -10.4195 -0.1578 37 1 4.6544 -9.1484 0.6358 38 1 6.2114 -10.7613 -0.2395 39 1 6.3021 -9.3264 -1.2844 40 1 4.5635 -11.7446 -1.9016 41 1 6.2200 -11.5433 -2.5156 42 1 5.5339 -9.3668 -3.5504 43 1 4.6136 -10.7491 -4.1961 44 1 2.1665 -4.0421 1.0177 45 1 2.8326 -3.7406 -0.6163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028588189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:46 Heat of formation + Delta-G solvation = -89.076215 kcal Electronic energy + Delta-G solvation = -26849.315886 eV Core-core repulsion = 22994.492337 eV Total energy + Delta-G solvation = -3854.823549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.11228 -37.95500 -37.53273 -36.93809 -36.38134 -34.79218 -32.78286 -32.27609 -29.92801 -28.81944 -27.97437 -25.64686 -24.51881 -23.29913 -21.49101 -21.02665 -20.01325 -19.88553 -19.19583 -17.86747 -17.23220 -16.93505 -16.67679 -16.20425 -15.92955 -15.50559 -14.98519 -14.72284 -14.54251 -14.33150 -14.24234 -13.78622 -13.52881 -13.46375 -13.07446 -12.49425 -12.38182 -12.37562 -12.31344 -12.13816 -12.00431 -11.87068 -11.75397 -11.45789 -11.41708 -11.05213 -10.91590 -10.78933 -10.75468 -10.43268 -10.19527 -10.07981 -9.90665 -9.80720 -9.66134 -9.11589 -8.60303 -6.84071 -5.71587 -3.05370 -0.54406 2.14976 2.39401 2.75872 3.31400 3.39766 3.43812 3.45471 3.48400 3.92627 4.02054 4.12903 4.23117 4.40466 4.48591 4.55362 4.72957 4.89765 4.99217 5.08009 5.20426 5.27000 5.29155 5.41039 5.44679 5.53451 5.54276 5.66812 5.72826 5.87199 5.99459 6.04311 6.27909 6.33739 6.48187 6.53517 6.65762 6.89591 7.30473 7.54933 7.63494 7.82330 7.95047 8.25739 9.21506 9.81927 10.48105 11.40099 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.002575 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.996995 B =10869.739040 C =11230.643001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.120 4.120 13 H 0.083 0.917 14 C 0.129 3.871 15 N -0.715 5.715 16 C 0.526 3.474 17 O -0.515 6.515 18 C -0.601 4.601 19 H 0.157 0.843 20 C -0.093 4.093 21 C -0.141 4.141 22 C -0.114 4.114 23 C -0.602 4.602 24 S 2.422 3.578 25 O -0.926 6.926 26 O -0.915 6.915 27 C 0.142 3.858 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.406 0.594 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.019 0.981 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -22.871 -5.124 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.140 4.140 13 H 0.101 0.899 14 C 0.006 3.994 15 N -0.367 5.367 16 C 0.308 3.692 17 O -0.390 6.390 18 C -0.710 4.710 19 H 0.174 0.826 20 C -0.131 4.131 21 C -0.178 4.178 22 C -0.152 4.152 23 C -0.731 4.731 24 S 2.601 3.399 25 O -0.923 6.923 26 O -0.912 6.912 27 C 0.016 3.984 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.242 0.758 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.037 0.963 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.618 -23.068 -4.933 25.869 hybrid contribution 1.597 1.407 -0.043 2.129 sum 12.215 -21.661 -4.977 25.361 Atomic orbital electron populations 1.69952 1.04891 1.25179 1.56882 1.24810 0.95729 0.97693 1.02210 0.86191 0.78444 0.83195 0.77855 1.21166 1.21583 1.21211 1.19001 0.90367 0.82457 1.44066 0.90558 1.44469 1.01755 0.99822 1.87202 1.21153 0.84282 0.88137 1.01156 1.22863 0.95380 0.99386 0.99723 1.22661 0.98802 0.91691 1.00856 0.89852 1.21548 0.86883 0.93551 0.97428 1.46131 1.31704 1.12504 1.46317 1.19135 0.84120 0.82569 0.83359 1.90757 1.53388 1.60445 1.34415 1.30476 1.07110 1.11940 1.21474 0.82553 1.21222 0.96799 0.96550 0.98560 1.21746 0.97796 1.00546 0.97738 1.21343 1.03638 0.97822 0.92367 1.30260 1.21374 1.12440 1.09072 1.08290 0.78231 0.76764 0.76632 1.93638 1.81615 1.58729 1.58349 1.93626 1.56611 1.57259 1.83724 1.21588 0.93962 0.86223 0.96673 0.93671 0.93473 0.93868 0.91849 0.92154 0.91112 0.90800 0.75843 0.88591 0.88989 0.89120 0.90450 0.89432 0.89187 0.84510 0.84381 0.96325 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.31 55.49 0.57 -26.58 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -15.40 3.39 -170.06 -0.58 -15.98 16 10 C 0.18 4.30 5.37 -3.06 -0.02 4.28 16 11 C -0.13 -2.47 6.42 -24.90 -0.16 -2.63 16 12 C -0.12 -2.02 3.05 -88.46 -0.27 -2.29 16 13 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 14 C 0.13 1.89 5.13 -4.04 -0.02 1.87 16 15 N -0.71 -9.31 5.50 -60.29 -0.33 -9.64 16 16 C 0.53 6.91 6.89 -10.99 -0.08 6.84 16 17 O -0.51 -8.51 16.25 5.56 0.09 -8.42 16 18 C -0.60 -5.12 2.80 -27.87 -0.08 -5.20 16 19 H 0.16 0.76 8.14 -51.93 -0.42 0.33 16 20 C -0.09 -0.66 4.55 -26.93 -0.12 -0.78 16 21 C -0.14 -0.55 5.63 -27.15 -0.15 -0.70 16 22 C -0.11 -0.45 5.73 -26.92 -0.15 -0.60 16 23 C -0.60 -2.72 6.35 37.18 0.24 -2.48 16 24 S 2.42 22.54 4.67 -107.50 -0.50 22.04 16 25 O -0.93 -11.45 18.10 -57.81 -1.05 -12.49 16 26 O -0.92 -12.01 17.92 -57.81 -1.04 -13.05 16 27 C 0.14 2.83 6.65 -2.52 -0.02 2.82 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.05 1.26 7.38 -51.93 -0.38 0.88 16 30 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 35 H 0.41 4.51 8.47 -40.82 -0.35 4.17 16 36 H 0.10 0.80 7.84 -51.93 -0.41 0.39 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.19 8.09 -51.93 -0.42 -0.23 16 40 H 0.09 0.39 8.01 -51.93 -0.42 -0.03 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.14 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.14 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.02 0.38 7.91 -51.94 -0.41 -0.03 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -37.64 370.13 -10.73 -48.37 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.38 Total: -1.08 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.08 Total: -5.79 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.34 Total: -52.20 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.99 Total: -33.96 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 22.54 SS G_CDS: -0.50 Total: 22.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.64 -10.73 -48.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028588189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.703 kcal (2) G-P(sol) polarization free energy of solvation -37.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds