Wall clock time and date at job start Tue Mar 31 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00623 * 2 1 4 4 H 1.48501 * 109.47196 * 240.00553 * 3 2 1 5 5 H 1.48501 * 109.46732 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47374 * 119.99902 * 3 2 1 7 7 C 1.38821 * 119.99510 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64720 * 0.03953 * 9 7 2 11 11 C 1.54906 * 104.82803 * 204.09507 * 10 9 7 12 12 C 1.55156 * 101.58535 * 322.98863 * 11 10 9 13 13 H 1.09002 * 110.87337 * 277.07091 * 12 11 10 14 14 C 1.52998 * 110.72346 * 153.86350 * 12 11 10 15 15 N 1.46504 * 109.47033 * 180.02562 * 14 12 11 16 16 C 1.34776 * 119.99537 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00510 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99666 * 180.02562 * 16 15 14 19 19 C 1.52593 * 109.24330 * 179.97438 * 18 16 15 20 20 C 1.53035 * 109.98565 * 169.75222 * 19 18 16 21 21 S 1.81664 * 109.00001 * 63.64966 * 20 19 18 22 22 O 1.42105 * 108.66421 * 60.03017 * 21 20 19 23 23 O 1.42099 * 108.66351 * 191.27606 * 21 20 19 24 24 C 1.81674 * 101.41083 * 305.65331 * 21 20 19 25 25 C 1.52587 * 109.21289 * 58.86364 * 18 16 15 26 26 C 1.47013 * 125.64557 * 179.97438 * 9 7 2 27 27 H 0.97002 * 119.99432 * 359.97438 * 1 2 3 28 28 H 1.08997 * 110.36305 * 322.92939 * 10 9 7 29 29 H 1.09000 * 110.36540 * 85.14540 * 10 9 7 30 30 H 1.09002 * 111.00528 * 204.91299 * 11 10 9 31 31 H 1.09003 * 111.00735 * 81.06604 * 11 10 9 32 32 H 1.09003 * 109.46610 * 60.02841 * 14 12 11 33 33 H 1.08994 * 109.47224 * 300.02955 * 14 12 11 34 34 H 0.96993 * 120.00155 * 0.02562 * 15 14 12 35 35 H 1.08995 * 109.23948 * 299.43715 * 18 16 15 36 36 H 1.09002 * 109.37950 * 49.59288 * 19 18 16 37 37 H 1.09000 * 109.38636 * 289.91208 * 19 18 16 38 38 H 1.09004 * 109.54987 * 303.79318 * 20 19 18 39 39 H 1.09005 * 109.62786 * 183.55393 * 20 19 18 40 40 H 1.09003 * 109.55038 * 174.20413 * 24 21 20 41 41 H 1.08997 * 109.54698 * 294.48839 * 24 21 20 42 42 H 1.09005 * 109.38323 * 310.42260 * 25 18 16 43 43 H 1.09005 * 109.38923 * 70.21117 * 25 18 16 44 44 H 1.08996 * 109.88550 * 59.55861 * 26 9 7 45 45 H 1.09002 * 110.01165 * 298.46143 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2024 0.0001 9 7 1.3254 -2.3882 0.0005 10 6 -0.1417 -2.5331 -0.0008 11 6 -0.4025 -3.9321 0.6111 12 6 0.7780 -4.7525 0.0272 13 1 0.5485 -5.1005 -0.9799 14 6 1.1219 -5.9312 0.9400 15 7 2.2382 -6.6853 0.3642 16 6 2.7151 -7.7738 0.9999 17 8 2.2205 -8.1288 2.0488 18 6 3.8637 -8.5492 0.4079 19 6 4.2022 -9.7232 1.3220 20 6 5.1857 -10.6641 0.6225 21 16 6.7433 -9.7775 0.3259 22 8 7.2737 -9.3591 1.5762 23 8 7.5508 -10.5560 -0.5464 24 6 6.1574 -8.3134 -0.5761 25 6 5.0673 -7.6241 0.2532 26 6 1.9315 -3.7275 0.0005 27 1 -0.4849 0.8401 0.0004 28 1 -0.5999 -1.7587 0.6143 29 1 -0.5267 -2.4849 -1.0194 30 1 -1.3596 -4.3326 0.2768 31 1 -0.3538 -3.8978 1.6995 32 1 0.2534 -6.5830 1.0344 33 1 1.4048 -5.5581 1.9242 34 1 2.6340 -6.4012 -0.4745 35 1 3.5739 -8.9284 -0.5720 36 1 3.2897 -10.2682 1.5637 37 1 4.6520 -9.3480 2.2413 38 1 4.7649 -10.9902 -0.3286 39 1 5.3747 -11.5320 1.2545 40 1 6.9884 -7.6262 -0.7353 41 1 5.7453 -8.6185 -1.5380 42 1 4.7571 -6.7078 -0.2491 43 1 5.4649 -7.3798 1.2384 44 1 2.5575 -3.8512 0.8842 45 1 2.5300 -3.8661 -0.8999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028840625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:08 Heat of formation + Delta-G solvation = -91.230329 kcal Electronic energy + Delta-G solvation = -26550.048479 eV Core-core repulsion = 22695.131521 eV Total energy + Delta-G solvation = -3854.916959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.37871 -37.96190 -37.45392 -36.62319 -36.38613 -34.83462 -32.68485 -32.21165 -30.09376 -29.02199 -27.93901 -25.58284 -24.12022 -23.69518 -22.20361 -20.63005 -19.97863 -19.63196 -19.25320 -17.73158 -17.18537 -16.83021 -16.77501 -16.16821 -16.10748 -15.46410 -15.18651 -14.71997 -14.59734 -14.25073 -14.12002 -13.70220 -13.60880 -13.40866 -12.80573 -12.66291 -12.58364 -12.50558 -12.37267 -12.30259 -11.94375 -11.81733 -11.78257 -11.58067 -11.49747 -11.14153 -11.01422 -10.83073 -10.53238 -10.47527 -10.21845 -10.09841 -9.99236 -9.80588 -9.56808 -9.10118 -8.69982 -6.89663 -5.70746 -3.12801 -0.40414 2.24188 2.41595 2.94726 3.24575 3.36894 3.41332 3.42547 3.53884 3.91864 4.03789 4.13332 4.26396 4.40336 4.44058 4.58737 4.71017 4.80928 4.98256 5.04903 5.12172 5.17562 5.28593 5.32424 5.38244 5.46511 5.55697 5.62183 5.70171 5.80218 5.98189 6.02581 6.26602 6.31952 6.46248 6.51392 6.63242 6.82202 7.37484 7.45042 7.56630 7.80147 8.06078 8.31056 9.16555 9.77595 10.41885 11.33144 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.002491 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.655602 B =11236.119904 C =12383.706976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.131 3.869 15 N -0.722 5.722 16 C 0.519 3.481 17 O -0.537 6.537 18 C -0.129 4.129 19 C -0.094 4.094 20 C -0.602 4.602 21 S 2.413 3.587 22 O -0.933 6.933 23 O -0.945 6.945 24 C -0.601 4.601 25 C -0.108 4.108 26 C 0.142 3.858 27 H 0.253 0.747 28 H 0.107 0.893 29 H 0.012 0.988 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.402 0.598 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.113 -21.024 -2.345 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.373 5.373 16 C 0.304 3.696 17 O -0.414 6.414 18 C -0.150 4.150 19 C -0.132 4.132 20 C -0.731 4.731 21 S 2.595 3.405 22 O -0.930 6.930 23 O -0.942 6.942 24 C -0.731 4.731 25 C -0.146 4.146 26 C 0.015 3.985 27 H 0.064 0.936 28 H 0.125 0.875 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.236 0.764 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.042 0.958 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 7.571 -21.259 -1.343 22.607 hybrid contribution -0.126 1.154 -0.958 1.505 sum 7.445 -20.105 -2.301 21.562 Atomic orbital electron populations 1.69783 1.04919 1.24973 1.57390 1.24797 0.95737 0.97776 1.02283 0.86144 0.78417 0.82964 0.77915 1.21209 1.21529 1.21102 1.19022 0.90451 0.82489 1.43432 0.90587 1.44486 1.01974 0.99686 1.86862 1.21939 0.84666 0.92524 0.98214 1.23006 0.95496 0.98575 1.00352 1.22458 0.98423 0.94008 0.98579 0.90595 1.21498 0.88120 0.92212 0.97382 1.46102 1.36223 1.28414 1.26598 1.20158 0.83809 0.80813 0.84802 1.90725 1.60061 1.68077 1.22520 1.21534 0.95072 0.96474 1.01963 1.21102 1.00466 0.93613 0.98055 1.30242 1.19762 1.12221 1.10876 1.08211 0.77808 0.78152 0.76329 1.93612 1.76033 1.81808 1.41575 1.93600 1.64794 1.68512 1.67292 1.30274 1.09894 1.19981 1.12902 1.21386 0.92292 0.99270 1.01693 1.21316 0.93453 0.86070 0.97622 0.93618 0.87512 0.96995 0.92106 0.91789 0.91540 0.91045 0.76352 0.87210 0.88197 0.88865 0.84784 0.84347 0.84106 0.84552 0.88434 0.88656 0.95807 0.96551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 10.09 55.49 0.56 -25.82 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.14 10.27 -15.06 -0.15 -6.29 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.88 3.39 -170.07 -0.58 -15.46 16 10 C 0.15 3.53 5.89 -2.53 -0.01 3.51 16 11 C -0.14 -2.37 6.53 -24.58 -0.16 -2.53 16 12 C -0.12 -1.76 3.02 -88.78 -0.27 -2.03 16 13 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 14 C 0.13 1.73 4.99 -4.04 -0.02 1.71 16 15 N -0.72 -7.64 5.20 -60.29 -0.31 -7.96 16 16 C 0.52 5.62 7.14 -10.98 -0.08 5.54 16 17 O -0.54 -7.92 15.78 5.56 0.09 -7.83 16 18 C -0.13 -0.86 2.28 -92.19 -0.21 -1.07 16 19 C -0.09 -0.64 4.46 -26.92 -0.12 -0.76 16 20 C -0.60 -2.75 6.35 37.18 0.24 -2.52 16 21 S 2.41 16.37 5.30 -107.50 -0.57 15.80 16 22 O -0.93 -10.09 17.93 -57.82 -1.04 -11.12 16 23 O -0.94 -9.64 18.10 -57.82 -1.05 -10.68 16 24 C -0.60 -2.71 6.38 37.33 0.24 -2.48 16 25 C -0.11 -0.66 5.00 -26.77 -0.13 -0.79 16 26 C 0.14 2.69 6.52 -3.06 -0.02 2.67 16 27 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.11 2.83 5.87 -51.93 -0.30 2.53 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 34 H 0.40 3.38 7.56 -40.82 -0.31 3.07 16 35 H 0.11 0.41 8.10 -51.93 -0.42 -0.02 16 36 H 0.10 0.74 7.72 -51.93 -0.40 0.34 16 37 H 0.09 0.73 8.01 -51.93 -0.42 0.31 16 38 H 0.13 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.14 0.50 8.14 -51.92 -0.42 0.07 16 40 H 0.14 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.14 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.10 0.54 7.19 -51.93 -0.37 0.17 16 43 H 0.09 0.67 8.00 -51.93 -0.42 0.26 16 44 H 0.02 0.46 7.77 -51.93 -0.40 0.06 16 45 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -37.32 366.74 -10.43 -47.74 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.23 Total: -1.41 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.80 Total: -5.42 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.33 Total: -49.24 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -2.00 Total: -29.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 16.37 SS G_CDS: -0.57 Total: 15.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.32 -10.43 -47.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028840625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.489 kcal (2) G-P(sol) polarization free energy of solvation -37.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds