Wall clock time and date at job start Tue Mar 31 2020 05:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00193 * 2 1 4 4 H 1.48500 * 109.47484 * 269.99974 * 3 2 1 5 5 H 1.48502 * 109.47151 * 29.99914 * 3 2 1 6 6 H 1.48497 * 109.47502 * 149.99793 * 3 2 1 7 7 C 1.38813 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00511 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99483 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.65016 * 359.95748 * 9 7 2 11 11 C 1.54328 * 107.26812 * 181.09236 * 10 9 7 12 12 C 1.55152 * 102.94330 * 22.19375 * 11 10 9 13 13 H 1.09004 * 111.03896 * 82.58231 * 12 11 10 14 14 C 1.52998 * 111.00482 * 206.41773 * 12 11 10 15 15 N 1.46504 * 109.47033 * 178.64862 * 14 12 11 16 16 C 1.34776 * 119.99537 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00510 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99666 * 180.02562 * 16 15 14 19 19 C 1.52593 * 109.24330 * 179.97438 * 18 16 15 20 20 C 1.53035 * 109.98565 * 169.75222 * 19 18 16 21 21 S 1.81664 * 109.00001 * 63.64966 * 20 19 18 22 22 O 1.42105 * 108.66421 * 60.03017 * 21 20 19 23 23 O 1.42099 * 108.66351 * 191.27606 * 21 20 19 24 24 C 1.81674 * 101.41083 * 305.65331 * 21 20 19 25 25 C 1.52587 * 109.21289 * 58.86364 * 18 16 15 26 26 C 1.47422 * 125.64726 * 179.97438 * 9 7 2 27 27 H 0.97000 * 119.99837 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.87935 * 300.51183 * 10 9 7 29 29 H 1.08997 * 109.88231 * 61.68232 * 10 9 7 30 30 H 1.08994 * 110.71962 * 263.82414 * 11 10 9 31 31 H 1.08999 * 110.71557 * 140.55595 * 11 10 9 32 32 H 1.09003 * 109.46610 * 58.65291 * 14 12 11 33 33 H 1.08994 * 109.47224 * 298.65404 * 14 12 11 34 34 H 0.96993 * 120.00155 * 0.02562 * 15 14 12 35 35 H 1.08995 * 109.23948 * 299.43715 * 18 16 15 36 36 H 1.09002 * 109.37950 * 49.59288 * 19 18 16 37 37 H 1.09000 * 109.38636 * 289.91208 * 19 18 16 38 38 H 1.09004 * 109.54987 * 303.79318 * 20 19 18 39 39 H 1.09005 * 109.62786 * 183.55393 * 20 19 18 40 40 H 1.09003 * 109.55038 * 174.20413 * 24 21 20 41 41 H 1.08997 * 109.54698 * 294.48839 * 24 21 20 42 42 H 1.09005 * 109.38323 * 310.42260 * 25 18 16 43 43 H 1.09005 * 109.38923 * 70.21117 * 25 18 16 44 44 H 1.09005 * 110.36471 * 36.99604 * 26 9 7 45 45 H 1.09003 * 110.46307 * 274.72668 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5327 0.0009 11 6 -0.4485 -4.0441 0.0288 12 6 0.8519 -4.6556 0.6137 13 1 0.8576 -4.5954 1.7021 14 6 1.0369 -6.1007 0.1464 15 7 2.2882 -6.6336 0.6909 16 6 2.6611 -7.8978 0.4094 17 8 1.9607 -8.5943 -0.2942 18 6 3.9480 -8.4462 0.9699 19 6 4.1273 -9.8871 0.5007 20 6 5.5363 -10.3770 0.8423 21 16 5.7343 -10.3957 2.6480 22 8 4.7645 -11.2739 3.2028 23 8 7.1078 -10.5947 2.9528 24 6 5.2851 -8.6884 3.0766 25 6 3.9010 -8.3792 2.4935 26 6 1.9333 -3.7311 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5574 -2.0514 0.8842 29 1 -0.5546 -2.0852 -0.9013 30 1 -0.6320 -4.4187 -0.9781 31 1 -1.2984 -4.2509 0.6792 32 1 1.0735 -6.1284 -0.9426 33 1 0.2010 -6.7058 0.4974 34 1 2.8482 -6.0767 1.2539 35 1 4.7822 -7.8444 0.6094 36 1 3.9783 -9.9375 -0.5780 37 1 3.3932 -10.5228 0.9957 38 1 6.2729 -9.7053 0.4015 39 1 5.6793 -11.3836 0.4492 40 1 5.2605 -8.5789 4.1608 41 1 6.0195 -8.0015 2.6559 42 1 3.5946 -7.3797 2.8024 43 1 3.1822 -9.1092 2.8659 44 1 2.8333 -3.7402 0.6155 45 1 2.1671 -4.0436 -1.0172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028840626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:18 Heat of formation + Delta-G solvation = -92.848546 kcal Electronic energy + Delta-G solvation = -26443.110418 eV Core-core repulsion = 22588.123288 eV Total energy + Delta-G solvation = -3854.987130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.38445 -37.96292 -37.47308 -36.64020 -36.40877 -34.84070 -32.68468 -32.22835 -30.10195 -29.03393 -27.96886 -25.57702 -24.14164 -23.71963 -22.20951 -20.57245 -20.01862 -19.70829 -19.27878 -17.74976 -17.19486 -16.80131 -16.76641 -16.23486 -16.05457 -15.64112 -14.93103 -14.67012 -14.61632 -14.50312 -13.98611 -13.65166 -13.62337 -13.51687 -12.96895 -12.67220 -12.53671 -12.42988 -12.39714 -12.32291 -12.10282 -11.95459 -11.76376 -11.56721 -11.45700 -11.16229 -10.96278 -10.85235 -10.53191 -10.47731 -10.22366 -10.08805 -9.96057 -9.81198 -9.72131 -9.10745 -8.66278 -6.90269 -5.77557 -3.11550 -0.42295 2.22077 2.41246 2.93346 3.22382 3.35132 3.39966 3.42138 3.52364 3.90401 4.01541 4.11294 4.25339 4.39088 4.43354 4.57871 4.70265 4.79870 4.96982 5.03078 5.11087 5.15447 5.25729 5.32010 5.36361 5.47225 5.52535 5.60987 5.69339 5.80835 5.95751 5.97598 6.26021 6.31398 6.40089 6.45937 6.59312 6.81991 7.37173 7.49343 7.56840 7.76478 8.05338 8.19677 9.15590 9.76055 10.41682 11.34133 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.002334 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.859242 B =11991.987296 C =12870.916701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.119 4.119 13 H 0.080 0.920 14 C 0.131 3.869 15 N -0.722 5.722 16 C 0.520 3.480 17 O -0.538 6.538 18 C -0.130 4.130 19 C -0.093 4.093 20 C -0.602 4.602 21 S 2.413 3.587 22 O -0.935 6.935 23 O -0.944 6.944 24 C -0.602 4.602 25 C -0.106 4.106 26 C 0.143 3.857 27 H 0.253 0.747 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.402 0.598 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.034 0.966 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.075 -19.322 4.218 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.373 5.373 16 C 0.305 3.695 17 O -0.415 6.415 18 C -0.152 4.152 19 C -0.132 4.132 20 C -0.731 4.731 21 S 2.595 3.405 22 O -0.932 6.932 23 O -0.941 6.941 24 C -0.732 4.732 25 C -0.145 4.145 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.237 0.763 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.052 0.948 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.766 -20.263 4.270 22.487 hybrid contribution 0.611 1.995 -0.285 2.106 sum 9.376 -18.268 3.985 20.917 Atomic orbital electron populations 1.69961 1.04907 1.25112 1.56876 1.24814 0.95730 0.97730 1.02147 0.86119 0.78551 0.83458 0.77602 1.21579 1.21639 1.20702 1.19036 0.90384 0.82429 1.44076 0.90502 1.44477 1.01742 0.99835 1.87202 1.21156 0.84297 0.88175 1.01155 1.22861 0.95414 0.99405 0.99703 1.22629 0.98719 0.91961 1.00528 0.90196 1.21441 0.85005 0.93868 0.98899 1.46094 1.25025 1.13582 1.52589 1.20147 0.86732 0.81863 0.80784 1.90722 1.54431 1.58315 1.37990 1.21546 0.98489 0.98760 0.96394 1.21097 0.92550 0.93840 1.05707 1.30242 1.05992 1.11389 1.25489 1.08197 0.75192 0.78249 0.78831 1.93604 1.62478 1.61308 1.75790 1.93603 1.32939 1.84745 1.82853 1.30281 1.06578 1.24530 1.11764 1.21368 0.94413 1.06121 0.92557 1.21557 0.93892 0.86246 0.96680 0.93691 0.93519 0.93882 0.92181 0.91925 0.91236 0.91490 0.76274 0.87046 0.88133 0.88936 0.84683 0.84324 0.84177 0.84435 0.88573 0.88777 0.94774 0.96377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.31 55.49 0.57 -25.96 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.61 -14.79 3.39 -170.06 -0.58 -15.37 16 10 C 0.18 4.12 5.37 -3.06 -0.02 4.10 16 11 C -0.13 -2.32 6.42 -24.90 -0.16 -2.48 16 12 C -0.12 -1.80 3.11 -88.47 -0.27 -2.07 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.13 1.68 5.12 -4.04 -0.02 1.66 16 15 N -0.72 -7.50 5.21 -60.29 -0.31 -7.82 16 16 C 0.52 5.51 7.14 -10.98 -0.08 5.43 16 17 O -0.54 -7.77 15.78 5.56 0.09 -7.68 16 18 C -0.13 -0.86 2.28 -92.19 -0.21 -1.07 16 19 C -0.09 -0.62 4.46 -26.92 -0.12 -0.74 16 20 C -0.60 -2.74 6.35 37.18 0.24 -2.50 16 21 S 2.41 15.63 5.30 -107.50 -0.57 15.06 16 22 O -0.93 -9.56 17.93 -57.82 -1.04 -10.60 16 23 O -0.94 -9.49 18.10 -57.82 -1.05 -10.53 16 24 C -0.60 -2.47 6.38 37.33 0.24 -2.23 16 25 C -0.11 -0.57 5.00 -26.77 -0.13 -0.70 16 26 C 0.14 2.66 6.41 -2.52 -0.02 2.64 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.05 1.21 7.38 -51.93 -0.38 0.82 16 29 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 30 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 3.38 7.57 -40.82 -0.31 3.07 16 35 H 0.11 0.46 8.10 -51.93 -0.42 0.04 16 36 H 0.10 0.75 7.72 -51.93 -0.40 0.35 16 37 H 0.09 0.68 8.01 -51.93 -0.42 0.26 16 38 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.14 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.14 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.10 0.44 7.19 -51.93 -0.37 0.06 16 43 H 0.09 0.55 8.00 -51.93 -0.42 0.13 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -37.44 367.59 -10.46 -47.90 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.29 Total: -2.41 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -0.81 Total: -4.66 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.32 Total: -49.15 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -2.00 Total: -28.82 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 15.63 SS G_CDS: -0.57 Total: 15.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.44 -10.46 -47.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028840626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.948 kcal (2) G-P(sol) polarization free energy of solvation -37.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds