Wall clock time and date at job start Tue Mar 31 2020 04:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99636 * 2 1 4 4 H 1.48494 * 109.47301 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.46831 * 120.00338 * 3 2 1 6 6 H 1.48501 * 109.47041 * 239.99995 * 3 2 1 7 7 C 1.38808 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00049 * 204.82128 * 7 2 1 9 9 N 1.36938 * 120.00418 * 24.81992 * 7 2 1 10 10 C 1.43429 * 120.53699 * 211.40858 * 9 7 2 11 11 C 1.54401 * 116.38850 * 271.72628 * 10 9 7 12 12 C 1.54843 * 110.07009 * 318.65074 * 11 10 9 13 13 C 1.50128 * 110.81950 * 321.07545 * 12 11 10 14 14 C 1.52522 * 105.41096 * 97.67983 * 13 12 11 15 15 H 1.08993 * 108.40769 * 31.75141 * 14 13 12 16 16 N 1.46507 * 108.51808 * 149.35459 * 14 13 12 17 17 C 1.34778 * 119.99776 * 209.71697 * 16 14 13 18 18 O 1.21277 * 120.00214 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99980 * 180.02562 * 17 16 14 20 20 C 1.52997 * 109.47377 * 180.02562 * 19 17 16 21 21 C 1.53039 * 113.14913 * 275.37211 * 20 19 17 22 22 S 1.81425 * 89.89054 * 211.85006 * 21 20 19 23 23 O 1.42104 * 112.75564 * 280.47501 * 22 21 20 24 24 O 1.42104 * 112.75392 * 136.72584 * 22 21 20 25 25 C 1.53042 * 113.15507 * 174.99741 * 20 19 17 26 26 C 1.46235 * 114.27939 * 270.59096 * 14 13 12 27 27 H 0.96998 * 119.99465 * 185.76947 * 1 2 3 28 28 H 1.09000 * 108.16338 * 33.30511 * 10 9 7 29 29 H 1.08999 * 108.15809 * 149.87324 * 10 9 7 30 30 H 1.09007 * 109.44713 * 198.43903 * 11 10 9 31 31 H 1.08994 * 109.24103 * 78.73535 * 11 10 9 32 32 H 1.08998 * 109.21076 * 200.72710 * 12 11 10 33 33 H 1.09005 * 109.20875 * 81.42191 * 12 11 10 34 34 H 1.08999 * 110.24398 * 338.71041 * 13 12 11 35 35 H 1.08996 * 110.25175 * 216.65497 * 13 12 11 36 36 H 0.96998 * 120.00206 * 29.72278 * 16 14 13 37 37 H 1.09006 * 109.46914 * 299.99859 * 19 17 16 38 38 H 1.08996 * 109.47390 * 59.99789 * 19 17 16 39 39 H 1.09000 * 112.49605 * 45.21271 * 20 19 17 40 40 H 1.09000 * 113.15047 * 327.11214 * 21 20 19 41 41 H 1.09002 * 113.15410 * 96.59484 * 21 20 19 42 42 H 1.09000 * 113.14924 * 263.40939 * 25 20 19 43 43 H 1.09003 * 113.14714 * 32.88448 * 25 20 19 44 44 H 1.08997 * 109.85289 * 298.90639 * 26 14 13 45 45 H 1.09004 * 109.90672 * 177.95085 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0155 -1.2455 0.3921 9 7 1.4206 -2.3331 -0.4988 10 6 1.7437 -3.6219 0.0413 11 6 2.9487 -4.3494 -0.5931 12 6 2.9253 -4.1744 -2.1315 13 6 1.5211 -4.2550 -2.6563 14 6 1.0639 -2.8086 -2.8147 15 1 1.9316 -2.1990 -3.0665 16 7 0.1112 -2.7406 -3.9256 17 6 0.0093 -1.6138 -4.6580 18 8 0.7058 -0.6559 -4.3970 19 6 -0.9711 -1.5437 -5.8003 20 6 -0.8867 -0.1663 -6.4611 21 6 -1.7442 0.8904 -5.7610 22 16 -2.0199 1.7162 -7.3528 23 8 -0.9209 2.5247 -7.7501 24 8 -3.3695 2.1219 -7.5350 25 6 -1.7619 -0.0436 -7.7106 26 6 0.4298 -2.2446 -1.6238 27 1 -0.4849 -0.8358 0.0844 28 1 1.9468 -3.5031 1.1056 29 1 0.8682 -4.2629 -0.0624 30 1 2.9012 -5.4109 -0.3495 31 1 3.8723 -3.9286 -0.1957 32 1 3.5255 -4.9597 -2.5910 33 1 3.3491 -3.2035 -2.3885 34 1 0.8817 -4.7770 -1.9444 35 1 1.5073 -4.7628 -3.6207 36 1 -0.4462 -3.5066 -4.1340 37 1 -0.7302 -2.3134 -6.5336 38 1 -1.9809 -1.7047 -5.4230 39 1 0.1418 0.1553 -6.6251 40 1 -2.6567 0.4825 -5.3262 41 1 -1.1811 1.4997 -5.0541 42 1 -1.2135 -0.2168 -8.6365 43 1 -2.6778 -0.6317 -7.6516 44 1 -0.4646 -2.8158 -1.3750 45 1 0.1650 -1.2024 -1.8026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034283611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:12 Heat of formation + Delta-G solvation = -60.831639 kcal Electronic energy + Delta-G solvation = -27462.735266 eV Core-core repulsion = 23609.136494 eV Total energy + Delta-G solvation = -3853.598773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.95138 -38.24266 -37.46077 -36.75476 -36.13616 -34.43615 -33.55252 -30.90114 -30.53850 -28.64767 -26.81351 -26.07132 -24.33718 -23.22843 -21.47522 -20.21355 -20.05513 -19.09758 -18.95722 -17.28729 -17.06081 -16.67479 -16.48098 -16.16281 -15.71384 -15.41070 -14.82532 -14.56883 -14.31749 -13.67738 -13.62308 -13.54584 -13.37687 -13.10131 -12.85961 -12.58300 -12.43385 -12.39032 -12.35705 -12.10169 -11.62025 -11.48458 -11.41233 -11.29815 -10.84336 -10.69685 -10.67342 -10.45095 -10.43596 -10.17515 -10.06046 -9.96337 -9.77025 -9.47259 -9.26212 -8.64739 -8.31787 -6.84863 -6.05376 -3.26714 0.00070 1.84429 2.97264 3.37832 3.52745 3.54729 3.62207 3.76042 3.84549 4.04772 4.46784 4.64255 4.71390 4.90157 4.98069 5.11271 5.14175 5.20241 5.27124 5.35231 5.42805 5.45134 5.51403 5.54631 5.75953 5.86718 5.90805 5.93826 5.96858 6.13329 6.27797 6.31833 6.58046 6.67582 6.68671 6.78678 6.84116 6.91593 6.98812 7.27880 7.84307 8.09985 8.56699 8.60941 9.14199 9.83962 10.30686 11.21739 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.003720 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.877839 B = 7525.047307 C = 9010.401301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.013 4.013 3 Si 1.059 2.941 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.353 4.353 8 H 0.053 0.947 9 N -0.584 5.584 10 C 0.157 3.843 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.119 4.119 14 C 0.132 3.868 15 H 0.086 0.914 16 N -0.732 5.732 17 C 0.503 3.497 18 O -0.525 6.525 19 C -0.118 4.118 20 C -0.051 4.051 21 C -0.592 4.592 22 S 2.406 3.594 23 O -0.914 6.914 24 O -0.932 6.932 25 C -0.601 4.601 26 C 0.124 3.876 27 H 0.267 0.733 28 H 0.039 0.961 29 H 0.023 0.977 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.391 0.609 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.022 0.978 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 -7.693 -14.783 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.216 4.216 3 Si 0.888 3.112 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.482 4.482 8 H 0.071 0.929 9 N -0.306 5.306 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.145 4.145 13 C -0.157 4.157 14 C 0.027 3.973 15 H 0.104 0.896 16 N -0.384 5.384 17 C 0.288 3.712 18 O -0.400 6.400 19 C -0.159 4.159 20 C -0.072 4.072 21 C -0.721 4.721 22 S 2.588 3.412 23 O -0.912 6.912 24 O -0.929 6.929 25 C -0.729 4.729 26 C -0.001 4.001 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.224 0.776 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.143 0.857 43 H 0.161 0.839 44 H 0.041 0.959 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.419 -4.189 -15.138 16.316 hybrid contribution 0.302 -3.306 0.517 3.360 sum -4.117 -7.495 -14.620 16.938 Atomic orbital electron populations 1.70791 1.06765 1.30115 1.46830 1.25779 0.96380 1.01437 0.97986 0.83630 0.75077 0.76274 0.76202 1.21091 1.22027 1.21788 1.19821 0.97622 0.88825 1.41937 0.92909 1.43834 1.49643 1.01704 1.35451 1.20233 0.93810 0.87258 0.95869 1.22821 1.01575 0.98902 0.95252 1.21296 0.95497 1.01380 0.96290 1.21314 0.98209 0.95938 1.00264 1.20985 0.93087 0.96283 0.86913 0.89588 1.46502 1.42516 1.15653 1.33733 1.20497 0.84085 0.83184 0.83441 1.90781 1.44424 1.35417 1.69369 1.21492 1.00504 0.97094 0.96828 1.21201 0.99519 0.95580 0.90912 1.31007 1.09027 1.10734 1.21337 1.08474 0.74431 0.77500 0.80771 1.93723 1.53405 1.64767 1.79267 1.93629 1.33962 1.81961 1.83366 1.31071 1.09078 1.27008 1.05754 1.20776 0.91021 1.02346 0.85994 0.92219 0.94260 0.95871 0.93188 0.92880 0.93748 0.91541 0.91209 0.92241 0.77632 0.88395 0.88394 0.85896 0.83954 0.84731 0.85743 0.83917 0.95947 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.18 12.25 55.49 0.68 -26.50 16 2 C -0.01 -0.37 4.77 -17.43 -0.08 -0.45 16 3 Si 1.06 26.33 29.99 -169.99 -5.10 21.23 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.35 -9.88 9.46 -15.06 -0.14 -10.02 16 8 H 0.05 1.50 7.94 -52.48 -0.42 1.08 16 9 N -0.58 -14.26 2.38 -175.41 -0.42 -14.68 16 10 C 0.16 3.23 5.13 -4.93 -0.03 3.21 16 11 C -0.14 -2.49 6.40 -25.03 -0.16 -2.65 16 12 C -0.11 -1.74 5.65 -27.19 -0.15 -1.90 16 13 C -0.12 -1.81 5.25 -28.40 -0.15 -1.96 16 14 C 0.13 2.43 2.01 -71.39 -0.14 2.29 16 15 H 0.09 1.92 6.22 -51.93 -0.32 1.60 16 16 N -0.73 -10.67 4.87 -57.21 -0.28 -10.95 16 17 C 0.50 7.81 7.74 -10.98 -0.09 7.72 16 18 O -0.52 -10.94 15.31 5.56 0.09 -10.86 16 19 C -0.12 -1.16 5.48 -27.88 -0.15 -1.31 16 20 C -0.05 -0.51 2.80 -90.58 -0.25 -0.77 16 21 C -0.59 -6.00 7.48 37.18 0.28 -5.72 16 22 S 2.41 21.68 7.55 -107.50 -0.81 20.87 16 23 O -0.91 -11.71 18.18 -57.30 -1.04 -12.76 16 24 O -0.93 -11.08 18.18 -57.30 -1.04 -12.12 16 25 C -0.60 -3.86 7.49 37.18 0.28 -3.58 16 26 C 0.12 2.79 4.10 -5.20 -0.02 2.77 16 27 H 0.27 8.02 7.02 -40.82 -0.29 7.73 16 28 H 0.04 0.85 8.00 -51.93 -0.42 0.44 16 29 H 0.02 0.44 6.89 -51.93 -0.36 0.09 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.27 6.82 -51.93 -0.35 0.91 16 34 H 0.07 1.05 6.28 -51.93 -0.33 0.72 16 35 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 36 H 0.39 4.16 8.61 -40.82 -0.35 3.80 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.77 7.89 -51.93 -0.41 0.36 16 39 H 0.12 1.40 7.71 -51.93 -0.40 1.00 16 40 H 0.14 1.21 7.94 -51.93 -0.41 0.79 16 41 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.14 0.64 8.12 -51.93 -0.42 0.21 16 44 H 0.02 0.49 8.13 -51.93 -0.42 0.06 16 45 H 0.10 2.63 5.79 -51.93 -0.30 2.33 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -38.36 364.05 -10.20 -48.56 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.95 Total: 4.08 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -0.81 Total: -12.37 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.02 Total: -52.13 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -2.00 Total: -35.73 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.10 Total: 21.23 kcal Atomic # 16 Polarization: 21.68 SS G_CDS: -0.81 Total: 20.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.36 -10.20 -48.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034283611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.270 kcal (2) G-P(sol) polarization free energy of solvation -38.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds