Wall clock time and date at job start Tue Mar 31 2020 04:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48502 * 109.46997 * 90.00385 * 3 2 1 5 5 H 1.48507 * 109.46949 * 209.99686 * 3 2 1 6 6 H 1.48494 * 109.47406 * 330.00280 * 3 2 1 7 7 C 1.38814 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00283 * 20.37802 * 7 2 1 9 9 N 1.36936 * 119.99746 * 200.37673 * 7 2 1 10 10 C 1.47602 * 118.64601 * 27.79567 * 9 7 2 11 11 C 1.54293 * 111.95059 * 137.77654 * 10 9 7 12 12 C 1.50882 * 110.23065 * 319.70249 * 11 10 9 13 13 C 1.52568 * 109.36020 * 91.79423 * 12 11 10 14 14 C 1.47094 * 114.32843 * 274.98791 * 13 12 11 15 15 H 1.09001 * 109.32668 * 302.54135 * 14 13 12 16 16 N 1.46504 * 109.32672 * 183.06134 * 14 13 12 17 17 C 1.34773 * 119.99697 * 154.13303 * 16 14 13 18 18 O 1.21290 * 120.00004 * 359.97438 * 17 16 14 19 19 C 1.50697 * 120.00049 * 179.97438 * 17 16 14 20 20 C 1.53007 * 109.47277 * 179.97438 * 19 17 16 21 21 C 1.53036 * 113.14955 * 275.37641 * 20 19 17 22 22 S 1.81432 * 89.88914 * 211.85366 * 21 20 19 23 23 O 1.42105 * 112.75022 * 280.47829 * 22 21 20 24 24 O 1.42093 * 112.75506 * 136.73133 * 22 21 20 25 25 C 1.53040 * 113.15047 * 175.00029 * 20 19 17 26 26 C 1.44580 * 118.64389 * 208.05953 * 9 7 2 27 27 H 0.96995 * 120.00626 * 174.88999 * 1 2 3 28 28 H 1.09005 * 108.94939 * 258.57662 * 10 9 7 29 29 H 1.09006 * 108.94836 * 17.19965 * 10 9 7 30 30 H 1.08997 * 109.37319 * 199.42302 * 11 10 9 31 31 H 1.08996 * 109.22548 * 79.88324 * 11 10 9 32 32 H 1.09002 * 109.49394 * 331.83156 * 12 11 10 33 33 H 1.09003 * 109.50738 * 211.77192 * 12 11 10 34 34 H 1.09000 * 108.51294 * 153.72983 * 13 12 11 35 35 H 1.09001 * 108.38668 * 36.15769 * 13 12 11 36 36 H 0.96994 * 120.00260 * 334.13577 * 16 14 13 37 37 H 1.08994 * 109.47327 * 300.00473 * 19 17 16 38 38 H 1.09001 * 109.47075 * 60.00290 * 19 17 16 39 39 H 1.08998 * 112.49274 * 45.21931 * 20 19 17 40 40 H 1.08997 * 113.15633 * 327.11011 * 21 20 19 41 41 H 1.09001 * 113.15205 * 96.59686 * 21 20 19 42 42 H 1.08994 * 113.14765 * 263.40774 * 25 20 19 43 43 H 1.08998 * 113.14684 * 32.85102 * 25 20 19 44 44 H 1.08998 * 109.44893 * 30.74826 * 26 9 7 45 45 H 1.09003 * 109.44737 * 150.67072 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.5208 -2.1081 -0.3266 9 7 3.3152 -1.2395 0.4124 10 6 3.7764 -0.2363 1.3919 11 6 4.6823 -0.8606 2.4738 12 6 4.1447 -2.2073 2.8909 13 6 4.7868 -3.2952 2.0354 14 6 4.1157 -3.5281 0.7473 15 1 3.0719 -3.7860 0.9259 16 7 4.7735 -4.6370 0.0515 17 6 4.0858 -5.3735 -0.8435 18 8 2.9223 -5.1187 -1.0725 19 6 4.7625 -6.5137 -1.5597 20 6 3.7674 -7.1802 -2.5120 21 6 2.8909 -8.2313 -1.8271 22 16 2.8284 -9.1807 -3.3720 23 8 1.8907 -8.6560 -4.3019 24 8 2.9986 -10.5763 -3.1667 25 6 4.4004 -8.2749 -3.3741 26 6 4.1861 -2.2564 -0.1335 27 1 -0.4851 -0.8366 -0.0748 28 1 4.3308 0.5419 0.8673 29 1 2.9081 0.2135 1.8735 30 1 4.7171 -0.2010 3.3409 31 1 5.6887 -0.9815 2.0733 32 1 3.0637 -2.2263 2.7522 33 1 4.3799 -2.3839 3.9405 34 1 4.7837 -4.2270 2.6008 35 1 5.8216 -3.0134 1.8406 36 1 5.7038 -4.8410 0.2349 37 1 5.6110 -6.1333 -2.1283 38 1 5.1121 -7.2445 -0.8305 39 1 3.1953 -6.4556 -3.0913 40 1 3.4030 -8.7574 -1.0214 41 1 1.9184 -7.8454 -1.5218 42 1 4.6922 -7.9252 -4.3643 43 1 5.2039 -8.8088 -2.8668 44 1 3.8692 -2.4993 -1.1477 45 1 5.2105 -1.8846 -0.1530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034283612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:20 Heat of formation + Delta-G solvation = -63.847820 kcal Electronic energy + Delta-G solvation = -27072.282891 eV Core-core repulsion = 23218.553327 eV Total energy + Delta-G solvation = -3853.729564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.98430 -38.27358 -37.58122 -36.89895 -36.25893 -34.71057 -33.36791 -31.24784 -30.98311 -28.92456 -26.95875 -25.96985 -24.81340 -22.69002 -21.49212 -20.39112 -19.95621 -19.64782 -19.09260 -17.27400 -17.17087 -16.80294 -16.61373 -16.30366 -15.93896 -15.51065 -15.35847 -14.62857 -14.37097 -14.03167 -13.72871 -13.56687 -13.27710 -13.22414 -12.94688 -12.70131 -12.59716 -12.50554 -12.47449 -12.22834 -11.83889 -11.61047 -11.52439 -11.42779 -11.34903 -10.87096 -10.70542 -10.58696 -10.51677 -10.28823 -10.10701 -9.79352 -9.59797 -9.51127 -9.06465 -8.95261 -8.36475 -6.97391 -6.18374 -3.27808 -0.12321 1.71907 2.82322 3.23643 3.41145 3.41717 3.55443 3.70768 3.71898 3.92334 4.34086 4.58872 4.61646 4.77721 4.84672 4.99403 5.04582 5.10254 5.12552 5.24053 5.25409 5.31315 5.49582 5.51698 5.54925 5.70385 5.76180 5.79235 5.95078 6.08346 6.15996 6.28931 6.40843 6.45848 6.54383 6.59299 6.67591 6.76318 6.88615 6.98618 7.70518 8.19723 8.45432 8.54622 9.14701 9.70378 10.20772 11.20538 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.002912 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.887245 B = 9613.792667 C =10632.165582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 1.069 2.931 4 H -0.295 1.295 5 H -0.288 1.288 6 H -0.302 1.302 7 C -0.349 4.349 8 H 0.070 0.930 9 N -0.595 5.595 10 C 0.121 3.879 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.112 4.112 14 C 0.115 3.885 15 H 0.089 0.911 16 N -0.726 5.726 17 C 0.504 3.496 18 O -0.525 6.525 19 C -0.117 4.117 20 C -0.052 4.052 21 C -0.594 4.594 22 S 2.408 3.592 23 O -0.911 6.911 24 O -0.932 6.932 25 C -0.601 4.601 26 C 0.158 3.842 27 H 0.263 0.737 28 H 0.022 0.978 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.391 0.609 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.140 0.860 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.143 0.857 44 H 0.053 0.947 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.683 -16.087 -0.628 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.217 4.217 3 Si 0.902 3.098 4 H -0.223 1.223 5 H -0.215 1.215 6 H -0.230 1.230 7 C -0.478 4.478 8 H 0.087 0.913 9 N -0.317 5.317 10 C -0.004 4.004 11 C -0.172 4.172 12 C -0.141 4.141 13 C -0.150 4.150 14 C 0.008 3.992 15 H 0.107 0.893 16 N -0.377 5.377 17 C 0.289 3.711 18 O -0.400 6.400 19 C -0.159 4.159 20 C -0.073 4.073 21 C -0.723 4.723 22 S 2.590 3.410 23 O -0.909 6.909 24 O -0.929 6.929 25 C -0.729 4.729 26 C 0.029 3.971 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.224 0.776 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.143 0.857 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.161 0.839 44 H 0.072 0.928 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 13.940 -15.039 -1.393 20.553 hybrid contribution 1.457 -0.991 0.750 1.914 sum 15.397 -16.030 -0.644 22.236 Atomic orbital electron populations 1.70868 1.06127 1.30132 1.49022 1.26173 0.96622 1.01064 0.97798 0.83771 0.74358 0.75841 0.75855 1.22338 1.21511 1.22991 1.20329 0.87009 0.95531 1.44950 0.91261 1.43858 1.09145 1.33246 1.45431 1.21815 0.97210 0.91544 0.89836 1.21921 0.99176 0.97057 0.99016 1.20838 1.02537 0.93811 0.96962 1.20576 0.99548 0.99016 0.95845 1.21168 0.97945 0.87530 0.92525 0.89321 1.46168 1.14790 1.33472 1.43262 1.20487 0.87334 0.83238 0.80072 1.90795 1.16517 1.69473 1.63201 1.21488 0.98761 0.97041 0.98606 1.21221 0.95411 0.95214 0.95464 1.31013 1.09349 1.11501 1.20428 1.08438 0.78705 0.74797 0.79089 1.93740 1.57339 1.81570 1.58221 1.93629 1.85429 1.28873 1.85007 1.31063 1.21837 1.11656 1.08357 1.20952 0.93007 0.87723 0.95430 0.92622 0.95984 0.91044 0.92285 0.92928 0.90182 0.92876 0.93226 0.92788 0.77561 0.88114 0.88541 0.85684 0.84158 0.85030 0.85558 0.83922 0.92845 0.95055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.13 13.70 55.49 0.76 -28.37 16 2 C -0.02 -0.45 5.14 -17.43 -0.09 -0.54 16 3 Si 1.07 26.74 24.39 -169.99 -4.15 22.59 16 4 H -0.30 -6.88 6.62 56.52 0.37 -6.50 16 5 H -0.29 -6.90 6.62 56.52 0.37 -6.52 16 6 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 7 C -0.35 -9.94 9.72 -15.06 -0.15 -10.09 16 8 H 0.07 2.20 8.06 -52.48 -0.42 1.77 16 9 N -0.59 -14.05 2.03 -171.87 -0.35 -14.40 16 10 C 0.12 2.57 4.02 -2.76 -0.01 2.56 16 11 C -0.13 -2.17 5.71 -27.12 -0.15 -2.32 16 12 C -0.10 -1.63 5.51 -28.02 -0.15 -1.79 16 13 C -0.11 -1.58 4.55 -29.79 -0.14 -1.72 16 14 C 0.11 1.93 2.35 -69.78 -0.16 1.77 16 15 H 0.09 1.89 7.55 -51.93 -0.39 1.50 16 16 N -0.73 -9.29 5.05 -55.62 -0.28 -9.57 16 17 C 0.50 6.95 7.79 -10.99 -0.09 6.87 16 18 O -0.52 -10.12 15.42 5.55 0.09 -10.03 16 19 C -0.12 -0.97 5.48 -27.88 -0.15 -1.13 16 20 C -0.05 -0.45 2.80 -90.58 -0.25 -0.71 16 21 C -0.59 -4.61 7.48 37.18 0.28 -4.33 16 22 S 2.41 18.18 7.55 -107.50 -0.81 17.37 16 23 O -0.91 -10.75 18.18 -57.30 -1.04 -11.79 16 24 O -0.93 -9.66 18.18 -57.30 -1.04 -10.70 16 25 C -0.60 -3.20 7.50 37.18 0.28 -2.93 16 26 C 0.16 3.18 5.24 -4.09 -0.02 3.15 16 27 H 0.26 8.36 8.73 -40.82 -0.36 8.00 16 28 H 0.02 0.47 5.95 -51.93 -0.31 0.17 16 29 H 0.07 1.67 5.28 -51.93 -0.27 1.40 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.77 7.31 -51.93 -0.38 0.39 16 32 H 0.08 1.56 7.49 -51.93 -0.39 1.17 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 36 H 0.39 3.47 8.58 -40.82 -0.35 3.12 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.54 7.89 -51.93 -0.41 0.13 16 39 H 0.13 1.34 7.71 -51.93 -0.40 0.94 16 40 H 0.14 0.79 7.94 -51.93 -0.41 0.37 16 41 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.14 0.46 8.12 -51.93 -0.42 0.03 16 44 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 45 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -39.44 361.01 -9.32 -48.76 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.12 Total: 1.89 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.81 Total: -11.19 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.13 Total: -52.34 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -2.00 Total: -32.53 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -4.15 Total: 22.59 kcal Atomic # 16 Polarization: 18.18 SS G_CDS: -0.81 Total: 17.37 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.44 -9.32 -48.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034283612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.087 kcal (2) G-P(sol) polarization free energy of solvation -39.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds