Wall clock time and date at job start Tue Mar 31 2020 04:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99436 * 2 1 4 4 H 1.48502 * 109.46627 * 180.27760 * 3 2 1 5 5 H 1.48504 * 109.47160 * 300.27359 * 3 2 1 6 6 H 1.48490 * 109.47136 * 60.27645 * 3 2 1 7 7 C 1.38802 * 120.00138 * 180.27671 * 2 1 3 8 8 H 1.08004 * 120.00174 * 196.36425 * 7 2 1 9 9 N 1.36938 * 120.00194 * 16.36233 * 7 2 1 10 10 C 1.44578 * 118.64379 * 207.37769 * 9 7 2 11 11 C 1.54868 * 109.59795 * 270.70469 * 10 9 7 12 12 C 1.47096 * 110.32288 * 288.72943 * 11 10 9 13 13 C 1.52571 * 114.32028 * 62.80167 * 12 11 10 14 14 C 1.50880 * 109.36045 * 274.98790 * 13 12 11 15 15 H 1.09003 * 109.36818 * 331.82378 * 14 13 12 16 16 N 1.46499 * 109.36554 * 212.08257 * 14 13 12 17 17 C 1.34784 * 120.00117 * 155.00424 * 16 14 13 18 18 O 1.21278 * 119.99373 * 359.97438 * 17 16 14 19 19 C 1.50696 * 120.00169 * 179.97438 * 17 16 14 20 20 H 1.08995 * 110.01510 * 58.61313 * 19 17 16 21 21 C 1.53875 * 110.02477 * 297.19016 * 19 17 16 22 22 C 1.54175 * 108.70464 * 193.53137 * 21 19 17 23 23 S 1.82925 * 105.08404 * 27.90405 * 22 21 19 24 24 O 1.42098 * 109.35115 * 244.48084 * 23 22 21 25 25 O 1.42100 * 109.35174 * 111.27809 * 23 22 21 26 26 C 1.55046 * 110.02890 * 179.97438 * 19 17 16 27 27 C 1.47602 * 118.64475 * 27.10543 * 9 7 2 28 28 H 0.96998 * 120.00714 * 359.72679 * 1 2 3 29 29 H 1.09000 * 109.45479 * 30.73654 * 10 9 7 30 30 H 1.09004 * 109.45213 * 150.69258 * 10 9 7 31 31 H 1.08999 * 109.33235 * 48.99430 * 11 10 9 32 32 H 1.09004 * 109.32984 * 168.64530 * 11 10 9 33 33 H 1.08999 * 108.51763 * 184.05356 * 12 11 10 34 34 H 1.08993 * 108.51405 * 301.55171 * 12 11 10 35 35 H 1.08993 * 109.49272 * 34.95725 * 13 12 11 36 36 H 1.09003 * 109.49036 * 155.02538 * 13 12 11 37 37 H 0.97005 * 120.00511 * 334.99407 * 16 14 13 38 38 H 1.09003 * 109.64806 * 313.37408 * 21 19 17 39 39 H 1.08999 * 109.65370 * 73.67663 * 21 19 17 40 40 H 1.09003 * 110.31110 * 269.00462 * 22 21 19 41 41 H 1.08993 * 110.40594 * 146.84952 * 22 21 19 42 42 H 1.08999 * 110.79065 * 279.99215 * 26 19 17 43 43 H 1.09005 * 110.78985 * 43.25757 * 26 19 17 44 44 H 1.08997 * 108.94959 * 258.57872 * 27 9 7 45 45 H 1.09003 * 108.94478 * 17.20896 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7101 1.3465 -0.0068 5 1 1.8862 2.3995 -1.2092 6 1 1.8963 2.3936 1.2158 7 6 2.0102 -1.2020 -0.0058 8 1 3.0575 -1.2223 0.2576 9 7 1.3672 -2.3623 -0.3455 10 6 1.8555 -3.6099 0.1980 11 6 2.9291 -4.2035 -0.7473 12 6 2.3037 -4.7012 -1.9821 13 6 1.6186 -3.6241 -2.8178 14 6 0.2160 -3.4097 -2.3048 15 1 -0.1484 -4.3320 -1.8523 16 7 -0.6577 -3.0378 -3.4204 17 6 -1.9820 -3.2779 -3.3483 18 8 -2.4502 -3.8022 -2.3600 19 6 -2.8809 -2.8949 -4.4957 20 1 -2.5587 -3.3995 -5.4065 21 6 -2.8543 -1.3699 -4.6994 22 6 -4.0182 -0.9751 -5.6303 23 16 -5.2975 -2.2547 -5.3619 24 8 -5.4873 -2.9900 -6.5629 25 8 -6.4134 -1.6737 -4.7013 26 6 -4.3486 -3.2739 -4.1699 27 6 0.2005 -2.2871 -1.2465 28 1 -0.4851 0.8400 0.0040 29 1 2.2949 -3.4312 1.1793 30 1 1.0279 -4.3129 0.2934 31 1 3.6565 -3.4312 -0.9972 32 1 3.4360 -5.0276 -0.2452 33 1 3.0720 -5.1761 -2.5922 34 1 1.5633 -5.4554 -1.7155 35 1 2.1799 -2.6929 -2.7417 36 1 1.5801 -3.9418 -3.8598 37 1 -0.2832 -2.6186 -4.2110 38 1 -2.9685 -0.8696 -3.7377 39 1 -1.9072 -1.0770 -5.1524 40 1 -3.6898 -0.9803 -6.6697 41 1 -4.4038 0.0080 -5.3606 42 1 -4.5218 -4.3358 -4.3445 43 1 -4.5984 -3.0066 -3.1431 44 1 -0.7105 -2.3675 -0.6535 45 1 0.2067 -1.3222 -1.7536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034303060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:57 Heat of formation + Delta-G solvation = -88.308569 kcal Electronic energy + Delta-G solvation = -27585.138434 eV Core-core repulsion = 23730.348172 eV Total energy + Delta-G solvation = -3854.790262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.00338 -37.94010 -37.23632 -36.28356 -35.88346 -34.51935 -33.60574 -30.85705 -30.47431 -29.96219 -26.37383 -25.75464 -24.30366 -23.35250 -22.34663 -20.35747 -19.79725 -19.30434 -19.04659 -17.63219 -17.12953 -16.69313 -15.99611 -15.81230 -15.69401 -15.35395 -14.75115 -14.64520 -14.39456 -14.14719 -13.84135 -13.44672 -13.35213 -13.01536 -12.66496 -12.52774 -12.46648 -12.35633 -12.22099 -12.15265 -12.12244 -11.40775 -11.35565 -11.19738 -11.07486 -11.00789 -10.77386 -10.56912 -10.49915 -10.30388 -10.23003 -10.02212 -9.86026 -9.65483 -9.52487 -8.66011 -8.44852 -6.69810 -5.82920 -3.27895 -0.18624 2.26547 2.73365 3.28375 3.30943 3.36694 3.40097 3.41529 3.79564 4.00197 4.30323 4.36888 4.45141 4.56760 4.60978 4.93937 5.16315 5.19820 5.26857 5.31606 5.39846 5.40818 5.56373 5.62950 5.66748 5.69298 5.85075 5.95292 6.13114 6.27402 6.41307 6.53488 6.59722 6.60411 6.70115 6.82774 6.90663 7.05084 7.28689 7.66079 7.76017 7.79217 8.40202 8.44151 9.18389 9.85239 10.30962 11.23517 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.003607 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.394046 B = 7760.052092 C = 9054.341704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.154 3.846 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.115 4.115 14 C 0.117 3.883 15 H 0.074 0.926 16 N -0.714 5.714 17 C 0.525 3.475 18 O -0.528 6.528 19 C -0.112 4.112 20 H 0.118 0.882 21 C -0.109 4.109 22 C -0.589 4.589 23 S 2.388 3.612 24 O -0.940 6.940 25 O -0.937 6.937 26 C -0.565 4.565 27 C 0.175 3.825 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.395 0.605 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.151 0.849 44 H 0.033 0.967 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -5.393 -13.075 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.193 4.193 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.308 5.308 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.012 3.988 15 H 0.092 0.908 16 N -0.365 5.365 17 C 0.309 3.691 18 O -0.403 6.403 19 C -0.135 4.135 20 H 0.136 0.864 21 C -0.148 4.148 22 C -0.719 4.719 23 S 2.572 3.428 24 O -0.937 6.937 25 O -0.934 6.934 26 C -0.695 4.695 27 C 0.049 3.951 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.229 0.771 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.156 0.844 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.170 0.830 44 H 0.051 0.949 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.495 -5.750 -12.718 14.663 hybrid contribution 1.459 1.262 -0.110 1.932 sum -3.036 -4.487 -12.828 13.926 Atomic orbital electron populations 1.70099 1.05175 1.25288 1.53818 1.25055 0.95204 0.98361 1.00668 0.86300 0.79467 0.84191 0.77281 1.20251 1.21673 1.21712 1.19236 0.92656 0.85080 1.41937 0.91587 1.43539 1.34106 1.02064 1.51120 1.20744 0.94055 0.88174 0.94429 1.21500 1.00334 0.99730 0.97212 1.20218 0.99084 0.97388 0.96946 1.21269 0.95636 1.00912 0.97493 1.21894 0.88426 1.00822 0.87618 0.90792 1.46144 1.07060 1.62432 1.20829 1.19805 0.82692 0.79081 0.87572 1.90729 1.74621 1.42697 1.32269 1.22024 0.93713 0.97397 1.00360 0.86440 1.21916 0.99113 0.92828 1.00964 1.30486 1.14722 1.17748 1.08938 1.09073 0.77827 0.78808 0.77100 1.93616 1.85501 1.70559 1.44017 1.93627 1.47424 1.76762 1.75583 1.30585 1.06029 1.14969 1.17901 1.21366 0.89573 0.95012 0.89186 0.93737 0.93542 0.94965 0.92044 0.93421 0.93693 0.93261 0.90016 0.93090 0.77080 0.88373 0.88127 0.84370 0.83995 0.84031 0.83047 0.94935 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.16 11.10 55.49 0.62 -24.54 16 2 C 0.01 0.16 4.84 -17.43 -0.08 0.08 16 3 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.26 -6.73 9.43 -15.06 -0.14 -6.87 16 8 H 0.07 1.70 7.88 -52.48 -0.41 1.29 16 9 N -0.59 -13.81 2.26 -171.88 -0.39 -14.20 16 10 C 0.15 3.11 5.65 -4.08 -0.02 3.09 16 11 C -0.15 -2.46 5.74 -28.58 -0.16 -2.62 16 12 C -0.10 -1.48 5.15 -29.78 -0.15 -1.63 16 13 C -0.12 -1.77 5.07 -28.01 -0.14 -1.91 16 14 C 0.12 2.04 2.27 -68.32 -0.15 1.89 16 15 H 0.07 1.41 6.75 -51.93 -0.35 1.06 16 16 N -0.71 -9.94 4.93 -54.18 -0.27 -10.21 16 17 C 0.53 7.55 7.09 -10.98 -0.08 7.47 16 18 O -0.53 -9.95 15.44 5.56 0.09 -9.86 16 19 C -0.11 -1.06 2.96 -90.24 -0.27 -1.33 16 20 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.11 -0.89 5.70 -25.66 -0.15 -1.04 16 22 C -0.59 -3.84 7.26 37.77 0.27 -3.56 16 23 S 2.39 21.70 6.11 -107.50 -0.66 21.04 16 24 O -0.94 -11.11 18.14 -57.71 -1.05 -12.16 16 25 O -0.94 -12.25 18.15 -57.71 -1.05 -13.29 16 26 C -0.56 -5.36 6.21 38.24 0.24 -5.12 16 27 C 0.17 3.95 4.29 -2.76 -0.01 3.93 16 28 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.05 0.96 7.99 -51.93 -0.41 0.55 16 30 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.74 7.36 -51.93 -0.38 0.35 16 35 H 0.08 1.44 7.49 -51.93 -0.39 1.05 16 36 H 0.05 0.65 7.94 -51.93 -0.41 0.23 16 37 H 0.40 4.17 8.54 -40.82 -0.35 3.82 16 38 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.14 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.14 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.15 1.64 7.63 -51.93 -0.40 1.24 16 44 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 45 H 0.08 1.86 6.38 -51.93 -0.33 1.52 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -36.12 364.28 -10.31 -46.43 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.21 Total: 3.15 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -0.86 Total: -7.63 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.04 Total: -48.95 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -2.01 Total: -35.31 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 16 Polarization: 21.70 SS G_CDS: -0.66 Total: 21.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.12 -10.31 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034303060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.881 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds