Wall clock time and date at job start Tue Mar 31 2020 04:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47094 * 274.73769 * 3 2 1 5 5 H 1.48507 * 109.47176 * 34.73887 * 3 2 1 6 6 H 1.48496 * 109.47471 * 154.73664 * 3 2 1 7 7 C 1.38810 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00724 * 199.53771 * 7 2 1 9 9 N 1.36940 * 119.99634 * 19.53939 * 7 2 1 10 10 C 1.50166 * 120.53709 * 31.15198 * 9 7 2 11 11 C 1.46240 * 107.53411 * 109.56338 * 10 9 7 12 12 C 1.52532 * 114.27805 * 58.40666 * 11 10 9 13 13 C 1.50130 * 105.41456 * 270.59553 * 12 11 10 14 14 C 1.54838 * 110.81258 * 97.68313 * 13 12 11 15 15 H 1.08998 * 109.35946 * 81.20468 * 14 13 12 16 16 N 1.46501 * 109.35575 * 200.92719 * 14 13 12 17 17 C 1.34779 * 120.00222 * 205.27610 * 16 14 13 18 18 O 1.21282 * 119.99368 * 359.72181 * 17 16 14 19 19 C 1.50691 * 120.00318 * 179.97438 * 17 16 14 20 20 H 1.09000 * 110.01593 * 58.34534 * 19 17 16 21 21 C 1.53879 * 110.02879 * 179.72065 * 19 17 16 22 22 C 1.54167 * 108.70635 * 166.46935 * 21 19 17 23 23 S 1.82923 * 105.08606 * 332.09738 * 22 21 19 24 24 O 1.42095 * 109.35685 * 115.51916 * 23 22 21 25 25 O 1.42102 * 109.34949 * 248.58962 * 23 22 21 26 26 C 1.55050 * 110.02888 * 296.91489 * 19 17 16 27 27 C 1.43130 * 120.56153 * 211.05367 * 9 7 2 28 28 H 0.96998 * 119.99901 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.85079 * 350.05691 * 10 9 7 30 30 H 1.08998 * 109.85241 * 229.06764 * 10 9 7 31 31 H 1.09007 * 108.51947 * 297.16850 * 11 10 9 32 32 H 1.09000 * 108.52745 * 179.65275 * 11 10 9 33 33 H 1.09005 * 110.24850 * 151.62189 * 12 11 10 34 34 H 1.08993 * 110.36731 * 29.63198 * 12 11 10 35 35 H 1.09004 * 109.20379 * 337.33871 * 13 12 11 36 36 H 1.08994 * 109.20588 * 218.02788 * 13 12 11 37 37 H 0.97006 * 120.00434 * 25.27367 * 16 14 13 38 38 H 1.08998 * 109.65145 * 286.32675 * 21 19 17 39 39 H 1.09003 * 109.64320 * 46.62418 * 21 19 17 40 40 H 1.09000 * 110.31601 * 90.99704 * 22 21 19 41 41 H 1.08996 * 110.32440 * 213.19324 * 22 21 19 42 42 H 1.08998 * 110.78663 * 316.54527 * 26 19 17 43 43 H 1.08994 * 110.78812 * 80.00489 * 26 19 17 44 44 H 1.09004 * 108.12813 * 149.85349 * 27 9 7 45 45 H 1.09003 * 107.99706 * 33.39052 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3975 2.1042 -1.3953 5 1 1.5013 2.6217 0.7978 6 1 3.5942 1.4134 0.5975 7 6 2.0103 -1.2021 0.0005 8 1 3.0436 -1.2289 0.3133 9 7 1.3847 -2.3541 -0.3956 10 6 0.2990 -2.3150 -1.4323 11 6 0.8294 -2.9287 -2.6491 12 6 1.3059 -4.3666 -2.4699 13 6 2.7502 -4.2619 -2.0739 14 6 2.9087 -4.3709 -0.5375 15 1 2.8854 -5.4208 -0.2454 16 7 4.1906 -3.7843 -0.1388 17 6 4.7903 -4.1856 0.9996 18 8 4.2663 -5.0287 1.6964 19 6 6.1092 -3.5826 1.4094 20 1 6.0094 -2.5021 1.5127 21 6 6.5793 -4.1978 2.7393 22 6 8.0600 -3.8287 2.9586 23 16 8.7515 -3.6159 1.2786 24 8 9.1490 -2.2633 1.1008 25 8 9.6721 -4.6650 1.0120 26 6 7.1966 -3.9183 0.3564 27 6 1.7562 -3.6154 0.1698 28 1 -0.4850 0.8400 -0.0004 29 1 0.0153 -1.2817 -1.6324 30 1 -0.5674 -2.8762 -1.0822 31 1 1.6671 -2.3279 -3.0031 32 1 0.0509 -2.9145 -3.4118 33 1 1.2104 -4.9152 -3.4069 34 1 0.7341 -4.8606 -1.6843 35 1 3.1450 -3.3024 -2.4080 36 1 3.3117 -5.0654 -2.5503 37 1 4.6078 -3.1071 -0.6940 38 1 5.9781 -3.8034 3.5584 39 1 6.4740 -5.2820 2.6990 40 1 8.1388 -2.8984 3.5210 41 1 8.5771 -4.6331 3.4817 42 1 7.1268 -4.9611 0.0471 43 1 7.1210 -3.2527 -0.5034 44 1 0.8769 -4.2596 0.1690 45 1 2.0463 -3.4471 1.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034303062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:04 Heat of formation + Delta-G solvation = -85.192281 kcal Electronic energy + Delta-G solvation = -27749.120266 eV Core-core repulsion = 23894.465136 eV Total energy + Delta-G solvation = -3854.655129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.97519 -38.05563 -37.27942 -36.31678 -35.84109 -34.37574 -33.41965 -31.12161 -30.76638 -29.66507 -26.40196 -25.91861 -24.33633 -23.28933 -22.28534 -20.36484 -19.65400 -19.33053 -19.07040 -17.59415 -17.08712 -16.62448 -16.25168 -15.91416 -15.59399 -15.18716 -15.00375 -14.71497 -14.48710 -14.14879 -13.81975 -13.65525 -13.28488 -12.79375 -12.71872 -12.43684 -12.40973 -12.36653 -12.24838 -12.13020 -11.92657 -11.74992 -11.35943 -11.22843 -11.14287 -11.05086 -10.89436 -10.69775 -10.61563 -10.26997 -10.04059 -9.95373 -9.70307 -9.55758 -9.45059 -8.85560 -8.40401 -6.66428 -5.86176 -3.32128 -0.24306 2.20756 2.74089 3.29868 3.30793 3.38061 3.38613 3.40258 3.74772 4.13978 4.25985 4.39257 4.42508 4.50653 4.64514 5.00136 5.11066 5.15353 5.23452 5.25638 5.34154 5.41695 5.42040 5.64997 5.66320 5.80778 5.92702 5.96911 6.02456 6.25236 6.35207 6.43970 6.53797 6.67777 6.70552 6.92578 6.99270 7.00294 7.31428 7.62259 7.71744 7.81383 8.43051 8.45307 9.10051 9.79481 10.36163 11.20644 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013018 B = 0.003968 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.425433 B = 7055.053638 C = 8222.169501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.007 3.993 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.062 0.938 9 N -0.578 5.578 10 C 0.146 3.854 11 C -0.132 4.132 12 C -0.111 4.111 13 C -0.111 4.111 14 C 0.115 3.885 15 H 0.078 0.922 16 N -0.701 5.701 17 C 0.529 3.471 18 O -0.544 6.544 19 C -0.113 4.113 20 H 0.122 0.878 21 C -0.096 4.096 22 C -0.590 4.590 23 S 2.391 3.609 24 O -0.934 6.934 25 O -0.940 6.940 26 C -0.583 4.583 27 C 0.150 3.850 28 H 0.254 0.746 29 H 0.100 0.900 30 H 0.021 0.979 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.399 0.601 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.035 0.965 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.614 -8.789 -0.299 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.193 4.193 3 Si 0.725 3.275 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.298 5.298 10 C 0.022 3.978 11 C -0.171 4.171 12 C -0.149 4.149 13 C -0.149 4.149 14 C 0.007 3.993 15 H 0.096 0.904 16 N -0.350 5.350 17 C 0.313 3.687 18 O -0.422 6.422 19 C -0.136 4.136 20 H 0.140 0.860 21 C -0.134 4.134 22 C -0.719 4.719 23 S 2.574 3.426 24 O -0.931 6.931 25 O -0.937 6.937 26 C -0.712 4.712 27 C 0.019 3.981 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.233 0.767 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.053 0.947 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.023 -9.010 -0.101 15.024 hybrid contribution -0.156 1.175 -0.080 1.188 sum 11.866 -7.836 -0.181 14.221 Atomic orbital electron populations 1.70016 1.05369 1.25497 1.52804 1.25028 0.95092 0.98412 1.00741 0.86400 0.79375 0.84123 0.77615 1.21492 1.21808 1.20348 1.19040 0.93402 0.85359 1.40272 0.91999 1.43835 1.41167 1.01168 1.43649 1.20346 0.89238 1.02014 0.86164 1.21073 1.00612 0.95100 1.00328 1.20951 0.95854 0.97900 1.00204 1.21667 0.97380 1.01429 0.94389 1.22917 0.84155 0.97515 0.94697 0.90440 1.46004 1.22997 1.42242 1.23737 1.19702 0.85260 0.82335 0.81435 1.90693 1.65917 1.33204 1.52354 1.22039 0.93928 1.03934 0.93708 0.85956 1.21717 0.91297 1.03683 0.96743 1.30503 1.07324 1.11885 1.22232 1.09059 0.77919 0.75433 0.80171 1.93640 1.80623 1.34248 1.84599 1.93613 1.59145 1.57503 1.83429 1.30710 1.17867 1.12413 1.10214 1.20598 0.93619 0.88530 0.95310 0.93636 0.88261 0.96064 0.92538 0.94378 0.92841 0.91534 0.91066 0.93740 0.76697 0.88140 0.88539 0.84298 0.84160 0.83915 0.83697 0.94689 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 11.25 55.49 0.62 -24.08 16 2 C 0.01 0.17 4.93 -17.43 -0.09 0.08 16 3 Si 0.89 20.60 29.60 -169.99 -5.03 15.57 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.25 -6.28 9.54 -15.06 -0.14 -6.43 16 8 H 0.06 1.51 7.90 -52.49 -0.41 1.10 16 9 N -0.58 -13.11 2.56 -175.30 -0.45 -13.56 16 10 C 0.15 3.19 5.37 -5.20 -0.03 3.16 16 11 C -0.13 -2.33 5.20 -30.18 -0.16 -2.49 16 12 C -0.11 -1.67 5.75 -28.40 -0.16 -1.83 16 13 C -0.11 -1.61 5.23 -27.19 -0.14 -1.75 16 14 C 0.11 1.85 2.92 -65.96 -0.19 1.65 16 15 H 0.08 1.27 7.57 -51.93 -0.39 0.87 16 16 N -0.70 -10.17 5.04 -51.90 -0.26 -10.43 16 17 C 0.53 7.55 6.99 -10.99 -0.08 7.47 16 18 O -0.54 -9.50 15.47 5.56 0.09 -9.42 16 19 C -0.11 -1.15 2.96 -90.23 -0.27 -1.42 16 20 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 21 C -0.10 -0.84 5.25 -25.66 -0.13 -0.98 16 22 C -0.59 -3.92 7.26 37.77 0.27 -3.65 16 23 S 2.39 20.70 6.10 -107.50 -0.66 20.04 16 24 O -0.93 -11.47 18.14 -57.73 -1.05 -12.52 16 25 O -0.94 -11.19 18.15 -57.73 -1.05 -12.24 16 26 C -0.58 -4.58 6.62 38.24 0.25 -4.33 16 27 C 0.15 3.01 4.76 -4.82 -0.02 2.99 16 28 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.10 2.48 5.65 -51.93 -0.29 2.19 16 30 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.06 1.04 6.93 -51.93 -0.36 0.68 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.04 6.30 -51.93 -0.33 0.71 16 35 H 0.07 1.11 6.59 -51.93 -0.34 0.77 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 5.18 8.45 -40.82 -0.34 4.84 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 0.87 7.68 -51.93 -0.40 0.47 16 40 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.14 1.00 8.10 -51.93 -0.42 0.58 16 43 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.70 6.89 -51.93 -0.36 0.34 16 45 H 0.04 0.96 7.85 -51.93 -0.41 0.55 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -34.48 361.87 -10.21 -44.69 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.00 Total: 3.99 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.89 Total: -7.51 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.09 Total: -48.07 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -2.01 Total: -34.18 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Atomic # 16 Polarization: 20.70 SS G_CDS: -0.66 Total: 20.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.48 -10.21 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034303062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.498 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds