Wall clock time and date at job start Tue Mar 31 2020 04:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00001 * 2 1 4 4 H 1.48507 * 109.46916 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47260 * 300.00009 * 3 2 1 6 6 H 1.48503 * 109.47435 * 60.00323 * 3 2 1 7 7 C 1.38818 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99909 * 195.65461 * 7 2 1 9 9 N 1.36937 * 119.99868 * 15.65396 * 7 2 1 10 10 C 1.47608 * 118.64190 * 26.50285 * 9 7 2 11 11 C 1.53949 * 112.14147 * 137.84139 * 10 9 7 12 12 C 1.51030 * 109.97055 * 319.41568 * 11 10 9 13 13 C 1.52573 * 109.27978 * 92.06630 * 12 11 10 14 14 C 1.47090 * 114.20674 * 274.78257 * 13 12 11 15 15 H 1.09004 * 109.33230 * 302.78847 * 14 13 12 16 16 N 1.46501 * 109.32822 * 183.13823 * 14 13 12 17 17 C 1.34782 * 120.00087 * 155.00245 * 16 14 13 18 18 O 1.21286 * 119.99814 * 359.97438 * 17 16 14 19 19 C 1.50697 * 120.00042 * 180.02562 * 17 16 14 20 20 H 1.09004 * 110.00912 * 59.29662 * 19 17 16 21 21 C 1.53874 * 110.02814 * 180.67585 * 19 17 16 22 22 C 1.54167 * 108.70569 * 166.47422 * 21 19 17 23 23 S 1.82915 * 105.08428 * 332.08942 * 22 21 19 24 24 O 1.42099 * 109.35321 * 115.52270 * 23 22 21 25 25 O 1.42100 * 109.35580 * 248.59725 * 23 22 21 26 26 C 1.55048 * 110.02945 * 297.91973 * 19 17 16 27 27 C 1.44579 * 118.64262 * 206.47347 * 9 7 2 28 28 H 0.96997 * 119.99797 * 0.02562 * 1 2 3 29 29 H 1.09000 * 108.94359 * 258.52412 * 10 9 7 30 30 H 1.08997 * 108.94732 * 17.24389 * 10 9 7 31 31 H 1.09003 * 109.36608 * 79.62413 * 11 10 9 32 32 H 1.08994 * 109.36767 * 199.24118 * 11 10 9 33 33 H 1.09001 * 109.64023 * 332.06500 * 12 11 10 34 34 H 1.08994 * 109.42737 * 211.93895 * 12 11 10 35 35 H 1.08996 * 108.51511 * 153.60439 * 13 12 11 36 36 H 1.09003 * 108.50737 * 35.95281 * 13 12 11 37 37 H 0.96994 * 120.00114 * 334.99733 * 16 14 13 38 38 H 1.09002 * 109.64364 * 286.32683 * 21 19 17 39 39 H 1.08993 * 109.64555 * 46.61751 * 21 19 17 40 40 H 1.08998 * 110.31768 * 90.98994 * 22 21 19 41 41 H 1.08995 * 110.31470 * 213.18907 * 22 21 19 42 42 H 1.09007 * 110.78527 * 316.54061 * 26 19 17 43 43 H 1.08999 * 110.79223 * 80.00300 * 26 19 17 44 44 H 1.09001 * 109.44750 * 150.71566 * 27 9 7 45 45 H 1.09000 * 109.44631 * 30.79606 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0602 -1.2197 0.2518 9 7 1.3636 -2.3660 -0.3211 10 6 0.1792 -2.2985 -1.1994 11 6 0.1713 -3.4235 -2.2502 12 6 1.5649 -3.6313 -2.7940 13 6 2.2712 -4.7057 -1.9726 14 6 2.9231 -4.2020 -0.7541 15 1 3.6392 -3.4253 -1.0227 16 7 3.6273 -5.3022 -0.0907 17 6 4.6760 -5.0425 0.7151 18 8 5.0370 -3.8980 0.8907 19 6 5.4007 -6.1742 1.3970 20 1 5.8007 -6.8631 0.6529 21 6 6.5410 -5.6203 2.2691 22 6 7.0366 -6.7406 3.2050 23 16 5.5882 -7.8301 3.4520 24 8 5.8611 -9.1094 2.8967 25 8 5.1420 -7.7228 4.7968 26 6 4.4357 -6.9246 2.3508 27 6 1.8695 -3.6100 0.2143 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7197 -2.3787 -0.5881 30 1 0.1734 -1.3368 -1.7124 31 1 -0.1795 -4.3467 -1.7887 32 1 -0.4990 -3.1518 -3.0656 33 1 2.1255 -2.6986 -2.7313 34 1 1.5042 -3.9504 -3.8344 35 1 3.0270 -5.1793 -2.5990 36 1 1.5383 -5.4601 -1.6864 37 1 3.3388 -6.2175 -0.2314 38 1 7.3599 -5.2856 1.6323 39 1 6.1748 -4.7824 2.8623 40 1 7.8504 -7.2934 2.7358 41 1 7.3620 -6.3219 4.1573 42 1 3.8298 -6.2201 2.9208 43 1 3.8047 -7.6184 1.7955 44 1 1.0472 -4.3158 0.3314 45 1 2.3309 -3.4265 1.1847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034303063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:09 Heat of formation + Delta-G solvation = -86.576042 kcal Electronic energy + Delta-G solvation = -27449.206606 eV Core-core repulsion = 23594.491472 eV Total energy + Delta-G solvation = -3854.715134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.11296 -37.99880 -37.34313 -36.37674 -35.89904 -34.65968 -33.29163 -31.15817 -30.73691 -29.64812 -26.34982 -25.83744 -24.36813 -23.36634 -22.25873 -20.31102 -19.95182 -19.20952 -19.13624 -17.66737 -17.20183 -16.63192 -16.25297 -16.10240 -15.81550 -15.22732 -14.88602 -14.65219 -14.43264 -14.04046 -13.90256 -13.52918 -13.21885 -12.98841 -12.60859 -12.57346 -12.49395 -12.47226 -12.32048 -12.23674 -12.14007 -11.60401 -11.43236 -11.21803 -11.08587 -10.95634 -10.81595 -10.70328 -10.57797 -10.19115 -10.14086 -9.76960 -9.68057 -9.61202 -9.59596 -8.90358 -8.34878 -6.66303 -5.76522 -3.20295 -0.31147 2.13750 2.66105 3.13237 3.30627 3.39236 3.47628 3.52025 3.66905 4.05091 4.15577 4.28405 4.43070 4.52723 4.54909 4.87151 4.98315 5.18995 5.21461 5.31283 5.33287 5.41125 5.49724 5.53300 5.69819 5.75684 5.94274 5.98189 6.08873 6.25085 6.33915 6.55345 6.56951 6.63292 6.68651 6.78613 6.88340 7.04576 7.42686 7.66195 7.70436 7.90223 8.36316 8.49747 9.26347 9.91372 10.34873 11.31097 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.003272 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.094851 B = 8556.466416 C = 9429.558616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.584 5.584 10 C 0.176 3.824 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.112 4.112 14 C 0.112 3.888 15 H 0.089 0.911 16 N -0.718 5.718 17 C 0.522 3.478 18 O -0.521 6.521 19 C -0.111 4.111 20 H 0.118 0.882 21 C -0.098 4.098 22 C -0.590 4.590 23 S 2.392 3.608 24 O -0.937 6.937 25 O -0.936 6.936 26 C -0.584 4.584 27 C 0.158 3.842 28 H 0.252 0.748 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.392 0.608 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.031 0.969 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.858 -16.409 0.000 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.305 5.305 10 C 0.052 3.948 11 C -0.183 4.183 12 C -0.139 4.139 13 C -0.150 4.150 14 C 0.006 3.994 15 H 0.107 0.893 16 N -0.369 5.369 17 C 0.305 3.695 18 O -0.396 6.396 19 C -0.134 4.134 20 H 0.136 0.864 21 C -0.137 4.137 22 C -0.719 4.719 23 S 2.575 3.425 24 O -0.935 6.935 25 O -0.933 6.933 26 C -0.713 4.713 27 C 0.028 3.972 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.226 0.774 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.156 0.844 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.162 0.838 44 H 0.049 0.951 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.847 -16.241 0.696 19.006 hybrid contribution 0.319 1.053 -0.623 1.264 sum 10.167 -15.188 0.073 18.277 Atomic orbital electron populations 1.70088 1.05199 1.25262 1.54439 1.25014 0.95240 0.98337 1.00726 0.86266 0.79618 0.84048 0.77189 1.20142 1.21636 1.21766 1.19346 0.92699 0.84750 1.41812 0.91240 1.43592 1.32101 1.01533 1.53226 1.21054 0.88400 0.95819 0.89575 1.22111 0.95850 1.00636 0.99683 1.20857 0.97060 0.99386 0.96568 1.20580 0.99247 0.98974 0.96212 1.21334 0.96130 0.88023 0.93939 0.89316 1.46153 1.31953 1.10635 1.48150 1.19805 0.80666 0.89422 0.79578 1.90802 1.65660 1.21744 1.61362 1.22027 0.94837 0.98114 0.98391 0.86430 1.21742 0.97607 0.97100 0.97253 1.30505 1.18579 1.13260 1.09603 1.09045 0.79792 0.77186 0.76474 1.93622 1.83808 1.35999 1.80032 1.93632 1.79782 1.87358 1.32504 1.30741 1.12917 1.13688 1.13965 1.20908 0.93345 0.88547 0.94413 0.93807 0.95744 0.90627 0.93700 0.92893 0.90427 0.93400 0.93405 0.92793 0.77447 0.88260 0.88196 0.84437 0.84038 0.83497 0.83759 0.95087 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.98 11.01 55.49 0.61 -25.37 16 2 C 0.01 0.14 4.87 -17.43 -0.08 0.05 16 3 Si 0.90 21.99 29.58 -169.99 -5.03 16.96 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 7 C -0.26 -6.99 9.44 -15.06 -0.14 -7.13 16 8 H 0.07 1.96 7.88 -52.49 -0.41 1.55 16 9 N -0.58 -14.05 2.27 -172.09 -0.39 -14.44 16 10 C 0.18 4.05 4.66 -2.94 -0.01 4.04 16 11 C -0.14 -2.54 5.72 -27.23 -0.16 -2.69 16 12 C -0.10 -1.63 5.51 -27.94 -0.15 -1.79 16 13 C -0.11 -1.61 4.55 -29.79 -0.14 -1.74 16 14 C 0.11 1.85 2.32 -69.78 -0.16 1.69 16 15 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 16 N -0.72 -8.97 5.00 -55.62 -0.28 -9.25 16 17 C 0.52 6.85 7.08 -10.98 -0.08 6.77 16 18 O -0.52 -9.43 15.48 5.55 0.09 -9.35 16 19 C -0.11 -0.90 2.96 -90.24 -0.27 -1.16 16 20 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 21 C -0.10 -0.76 5.24 -25.67 -0.13 -0.89 16 22 C -0.59 -3.28 7.26 37.77 0.27 -3.00 16 23 S 2.39 18.14 6.10 -107.50 -0.66 17.48 16 24 O -0.94 -9.83 18.14 -57.73 -1.05 -10.88 16 25 O -0.94 -10.90 18.15 -57.73 -1.05 -11.95 16 26 C -0.58 -3.98 6.61 38.24 0.25 -3.72 16 27 C 0.16 3.19 5.23 -4.08 -0.02 3.17 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.02 0.61 8.03 -51.93 -0.42 0.20 16 30 H 0.08 1.95 6.33 -51.93 -0.33 1.62 16 31 H 0.04 0.74 7.31 -51.93 -0.38 0.36 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.49 7.48 -51.93 -0.39 1.10 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 37 H 0.39 3.48 8.56 -40.82 -0.35 3.13 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.92 7.70 -51.93 -0.40 0.52 16 40 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.15 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 45 H 0.05 1.08 7.96 -51.93 -0.41 0.67 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -36.86 364.30 -10.30 -47.16 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.22 Total: 0.55 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.82 Total: -6.41 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.06 Total: -49.06 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -2.01 Total: -32.17 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 16 Polarization: 18.14 SS G_CDS: -0.66 Total: 17.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.86 -10.30 -47.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034303063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.411 kcal (2) G-P(sol) polarization free energy of solvation -36.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds