Wall clock time and date at job start Tue Mar 31 2020 04:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99903 * 2 1 4 4 H 1.48498 * 109.46973 * 270.00362 * 3 2 1 5 5 H 1.48503 * 109.46649 * 29.99857 * 3 2 1 6 6 H 1.48496 * 109.47129 * 149.99689 * 3 2 1 7 7 C 1.38818 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99869 * 160.41818 * 7 2 1 9 9 N 1.36930 * 119.99723 * 340.41439 * 7 2 1 10 10 C 1.50170 * 120.54291 * 336.69985 * 9 7 2 11 11 C 1.46232 * 107.53473 * 109.56549 * 10 9 7 12 12 C 1.52525 * 114.28068 * 58.41192 * 11 10 9 13 13 C 1.50124 * 105.41621 * 270.59278 * 12 11 10 14 14 C 1.54842 * 110.81647 * 97.67961 * 13 12 11 15 15 H 1.08992 * 109.35963 * 81.33794 * 14 13 12 16 16 N 1.46503 * 109.35698 * 201.06861 * 14 13 12 17 17 C 1.34788 * 119.99624 * 205.27246 * 16 14 13 18 18 O 1.21281 * 119.99816 * 0.02562 * 17 16 14 19 19 C 1.50694 * 119.99632 * 179.97438 * 17 16 14 20 20 H 1.08994 * 110.01416 * 59.30472 * 19 17 16 21 21 C 1.53880 * 110.02951 * 297.91850 * 19 17 16 22 22 C 1.54193 * 108.69229 * 193.57820 * 21 19 17 23 23 S 1.82924 * 105.10701 * 27.83315 * 22 21 19 24 24 O 1.42099 * 109.35100 * 244.51559 * 23 22 21 25 25 O 1.42104 * 109.35040 * 111.31860 * 23 22 21 26 26 C 1.55052 * 110.02605 * 180.67906 * 19 17 16 27 27 C 1.43434 * 120.53481 * 156.67252 * 9 7 2 28 28 H 0.96999 * 120.00432 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.84383 * 350.05816 * 10 9 7 30 30 H 1.08997 * 109.90262 * 229.11154 * 10 9 7 31 31 H 1.08999 * 108.52706 * 297.17191 * 11 10 9 32 32 H 1.09000 * 108.40319 * 179.56464 * 11 10 9 33 33 H 1.08994 * 110.25276 * 151.61279 * 12 11 10 34 34 H 1.09001 * 110.36687 * 29.62612 * 12 11 10 35 35 H 1.09008 * 109.20755 * 337.33731 * 13 12 11 36 36 H 1.09003 * 109.17489 * 218.00138 * 13 12 11 37 37 H 0.96993 * 120.00300 * 25.27534 * 16 14 13 38 38 H 1.09002 * 109.64431 * 313.38392 * 21 19 17 39 39 H 1.09001 * 109.64187 * 73.67648 * 21 19 17 40 40 H 1.09003 * 110.27057 * 268.94557 * 22 21 19 41 41 H 1.08992 * 110.42610 * 146.80691 * 22 21 19 42 42 H 1.08999 * 110.79231 * 279.99622 * 26 19 17 43 43 H 1.09006 * 110.78807 * 43.45733 * 26 19 17 44 44 H 1.09003 * 108.16111 * 149.87565 * 27 9 7 45 45 H 1.09002 * 108.15999 * 33.30865 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0434 -1.2293 -0.3129 9 7 1.3851 -2.3535 0.3986 10 6 0.1862 -2.2981 1.3012 11 6 -0.9805 -2.6832 0.5081 12 6 -0.8830 -4.0706 -0.1180 13 6 -0.2325 -3.8604 -1.4546 14 6 1.2861 -4.1533 -1.3796 15 1 1.4507 -5.2284 -1.4503 16 7 1.9653 -3.4838 -2.4918 17 6 3.1389 -3.9621 -2.9507 18 8 3.6324 -4.9469 -2.4432 19 6 3.8372 -3.2739 -4.0950 20 1 4.0564 -2.2395 -3.8304 21 6 2.9551 -3.3199 -5.3551 22 6 3.8135 -2.9264 -6.5740 23 16 5.5207 -3.4118 -6.1314 24 8 6.3331 -2.2492 -6.0437 25 8 5.9270 -4.5017 -6.9477 26 6 5.1496 -4.0223 -4.4435 27 6 1.8644 -3.6322 -0.0403 28 1 -0.4851 0.8400 -0.0004 29 1 0.0565 -1.2851 1.6823 30 1 0.3146 -2.9920 2.1318 31 1 -1.1140 -1.9522 -0.2892 32 1 -1.8591 -2.6552 1.1526 33 1 -1.8776 -4.4978 -0.2455 34 1 -0.2691 -4.7242 0.5017 35 1 -0.3834 -2.8274 -1.7684 36 1 -0.6907 -4.5275 -2.1847 37 1 1.5704 -2.6964 -2.8978 38 1 2.5649 -4.3284 -5.4925 39 1 2.1264 -2.6200 -5.2480 40 1 3.7578 -1.8511 -6.7438 41 1 3.4844 -3.4668 -7.4614 42 1 5.9457 -3.7508 -3.7502 43 1 4.9904 -5.1007 -4.4485 44 1 1.6381 -4.3642 0.7350 45 1 2.9484 -3.5733 -0.1383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034303065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:15 Heat of formation + Delta-G solvation = -81.970135 kcal Electronic energy + Delta-G solvation = -27911.955157 eV Core-core repulsion = 24057.439750 eV Total energy + Delta-G solvation = -3854.515407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.87882 -37.93966 -37.20480 -36.24879 -35.84333 -34.32547 -33.18705 -31.08687 -30.37483 -29.89477 -26.48802 -25.75348 -24.09590 -23.12219 -22.41079 -20.27582 -19.51022 -19.23108 -19.01818 -17.57133 -17.05347 -16.69978 -15.92123 -15.75515 -15.64223 -15.14973 -14.84175 -14.61112 -14.44387 -14.04185 -13.74992 -13.64188 -13.23558 -12.74117 -12.47863 -12.43338 -12.32884 -12.30471 -12.18485 -12.07443 -11.83917 -11.62786 -11.37020 -11.29464 -10.99193 -10.84324 -10.81576 -10.58373 -10.53864 -10.18649 -10.04477 -9.80314 -9.55574 -9.44151 -9.32151 -8.71653 -8.40839 -6.77432 -5.88576 -3.26911 -0.15533 2.29768 2.84611 3.29065 3.35426 3.38874 3.42589 3.49077 3.84790 4.05882 4.33567 4.42132 4.42848 4.58140 4.71812 5.08728 5.22976 5.29163 5.29814 5.32643 5.42051 5.44113 5.56872 5.62897 5.71833 5.87088 6.05214 6.14015 6.18407 6.37855 6.44433 6.55138 6.76943 6.83458 6.90945 6.95330 7.11596 7.20141 7.54744 7.65882 7.91276 7.93040 8.33690 8.55389 9.10521 9.78151 10.31604 11.17925 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.003989 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.054876 B = 7017.376456 C = 8259.044310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.003 3.997 3 Si 0.894 3.106 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.063 0.937 9 N -0.583 5.583 10 C 0.164 3.836 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.109 4.109 14 C 0.116 3.884 15 H 0.072 0.928 16 N -0.696 5.696 17 C 0.526 3.474 18 O -0.547 6.547 19 C -0.115 4.115 20 H 0.123 0.877 21 C -0.106 4.106 22 C -0.591 4.591 23 S 2.386 3.614 24 O -0.936 6.936 25 O -0.941 6.941 26 C -0.562 4.562 27 C 0.151 3.849 28 H 0.252 0.748 29 H 0.089 0.911 30 H 0.005 0.995 31 H 0.101 0.899 32 H 0.024 0.976 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.402 0.598 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.036 0.964 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -6.480 -9.650 11.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.724 3.276 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.081 0.919 9 N -0.304 5.304 10 C 0.041 3.959 11 C -0.169 4.169 12 C -0.150 4.150 13 C -0.147 4.147 14 C 0.008 3.992 15 H 0.090 0.910 16 N -0.345 5.345 17 C 0.309 3.691 18 O -0.425 6.425 19 C -0.138 4.138 20 H 0.141 0.859 21 C -0.145 4.145 22 C -0.720 4.720 23 S 2.570 3.430 24 O -0.933 6.933 25 O -0.938 6.938 26 C -0.692 4.692 27 C 0.020 3.980 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.023 0.977 31 H 0.119 0.881 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.237 0.763 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.055 0.945 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.923 -6.957 -9.769 12.146 hybrid contribution -0.603 1.372 0.157 1.507 sum 1.320 -5.585 -9.612 11.195 Atomic orbital electron populations 1.69954 1.05001 1.25211 1.54251 1.24852 0.95175 0.97982 1.01454 0.86431 0.79376 0.84103 0.77645 1.21609 1.21666 1.20703 1.19118 0.93375 0.85268 1.39415 0.91887 1.44224 1.33575 1.00750 1.51813 1.20176 0.85370 1.00452 0.89944 1.20999 0.98091 0.95508 1.02253 1.20970 0.98607 0.98903 0.96559 1.21666 0.93336 1.02302 0.97432 1.22859 0.91940 0.95753 0.88642 0.90959 1.46005 1.21741 1.31462 1.35276 1.19715 0.81405 0.84334 0.83613 1.90672 1.65210 1.26746 1.59869 1.22048 0.93537 1.02206 0.96008 0.85921 1.21888 0.98770 1.04874 0.88960 1.30495 1.22051 1.12500 1.06984 1.09119 0.78638 0.76098 0.79124 1.93634 1.64865 1.48592 1.86237 1.93611 1.80663 1.53826 1.65694 1.30540 1.05218 1.11806 1.21601 1.20793 0.96887 0.88493 0.91803 0.93757 0.89298 0.97688 0.88121 0.95688 0.93264 0.92438 0.90149 0.94291 0.76336 0.89176 0.88017 0.84187 0.84205 0.83898 0.83425 0.94537 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.63 9.43 55.49 0.52 -22.11 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.89 20.19 29.60 -169.99 -5.03 15.16 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.24 -5.92 9.63 -15.06 -0.14 -6.06 16 8 H 0.06 1.58 7.89 -52.49 -0.41 1.17 16 9 N -0.58 -13.00 2.60 -175.08 -0.46 -13.46 16 10 C 0.16 3.55 5.25 -5.21 -0.03 3.52 16 11 C -0.13 -2.53 5.02 -30.19 -0.15 -2.68 16 12 C -0.11 -1.86 5.75 -28.40 -0.16 -2.02 16 13 C -0.11 -1.78 5.23 -27.19 -0.14 -1.92 16 14 C 0.12 1.96 2.92 -65.95 -0.19 1.77 16 15 H 0.07 1.24 7.57 -51.93 -0.39 0.84 16 16 N -0.70 -10.69 5.02 -51.90 -0.26 -10.95 16 17 C 0.53 7.85 6.98 -10.98 -0.08 7.77 16 18 O -0.55 -9.92 15.44 5.56 0.09 -9.84 16 19 C -0.12 -1.24 2.96 -90.23 -0.27 -1.51 16 20 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 21 C -0.11 -0.84 5.68 -25.65 -0.15 -0.98 16 22 C -0.59 -3.93 7.26 37.78 0.27 -3.66 16 23 S 2.39 22.79 6.11 -107.50 -0.66 22.14 16 24 O -0.94 -12.30 18.15 -57.71 -1.05 -13.35 16 25 O -0.94 -12.00 18.15 -57.71 -1.05 -13.05 16 26 C -0.56 -5.63 6.20 38.24 0.24 -5.40 16 27 C 0.15 2.99 4.78 -4.66 -0.02 2.97 16 28 H 0.25 6.33 8.31 -40.82 -0.34 5.99 16 29 H 0.09 2.17 6.05 -51.93 -0.31 1.86 16 30 H 0.00 0.10 8.13 -51.93 -0.42 -0.32 16 31 H 0.10 2.24 5.29 -51.93 -0.27 1.96 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.95 6.30 -51.93 -0.33 0.62 16 35 H 0.08 1.49 6.59 -51.92 -0.34 1.15 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.40 5.81 8.43 -40.82 -0.34 5.46 16 38 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.14 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.14 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.15 1.49 7.64 -51.93 -0.40 1.09 16 44 H 0.04 0.70 6.90 -51.93 -0.36 0.34 16 45 H 0.04 0.81 7.84 -51.93 -0.41 0.40 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -32.47 358.50 -10.32 -42.79 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.93 Total: 5.46 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.91 Total: -8.20 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.19 Total: -46.51 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -2.01 Total: -36.23 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Atomic # 16 Polarization: 22.79 SS G_CDS: -0.66 Total: 22.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.47 -10.32 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034303065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.177 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds