Wall clock time and date at job start Tue Mar 31 2020 05:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00422 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99911 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00518 * 3 2 1 7 7 C 1.38811 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99662 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99901 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99845 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47368 * 325.00100 * 10 9 7 12 12 C 1.53002 * 109.47313 * 84.99828 * 10 9 7 13 13 C 1.52996 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47335 * 299.99524 * 13 12 10 15 15 H 1.08994 * 109.47173 * 300.00722 * 14 13 12 16 16 N 1.46493 * 109.47302 * 179.97438 * 14 13 12 17 17 C 1.34785 * 119.99946 * 85.00425 * 16 14 13 18 18 O 1.21287 * 119.99519 * 0.02562 * 17 16 14 19 19 C 1.50694 * 120.00101 * 180.02562 * 17 16 14 20 20 H 1.08998 * 109.64326 * 300.70111 * 19 17 16 21 21 C 1.53873 * 109.64769 * 61.13132 * 19 17 16 22 22 C 1.54977 * 106.65819 * 167.15102 * 21 19 17 23 23 S 1.83292 * 102.47802 * 317.38053 * 22 21 19 24 24 O 1.42099 * 109.35654 * 269.89976 * 23 22 21 25 25 O 1.42102 * 109.34997 * 136.70157 * 23 22 21 26 26 C 1.54169 * 109.64427 * 180.27277 * 19 17 16 27 27 C 1.53002 * 109.46705 * 60.00317 * 14 13 12 28 28 C 1.52999 * 109.47018 * 204.99999 * 10 9 7 29 29 H 0.96993 * 120.00251 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00431 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46954 * 300.00016 * 12 10 9 32 32 H 1.09003 * 109.46681 * 59.99851 * 12 10 9 33 33 H 1.09003 * 109.46886 * 180.02562 * 13 12 10 34 34 H 1.08994 * 109.47579 * 59.99998 * 13 12 10 35 35 H 0.97005 * 120.00784 * 265.00635 * 16 14 13 36 36 H 1.08993 * 110.02887 * 286.32157 * 21 19 17 37 37 H 1.09002 * 110.02920 * 47.74364 * 21 19 17 38 38 H 1.09008 * 110.75485 * 199.18035 * 22 21 19 39 39 H 1.08992 * 111.07356 * 75.73556 * 22 21 19 40 40 H 1.08998 * 110.31970 * 331.14039 * 26 19 17 41 41 H 1.09006 * 110.32037 * 93.33728 * 26 19 17 42 42 H 1.09001 * 109.47375 * 179.97438 * 27 14 13 43 43 H 1.09009 * 109.47219 * 59.99842 * 27 14 13 44 44 H 1.08995 * 109.47346 * 299.99613 * 28 10 9 45 45 H 1.08998 * 109.47347 * 60.00608 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4404 -0.7000 6 1 1.4475 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5651 -3.2062 0.5887 12 6 4.2578 -2.9756 -1.4380 13 6 5.0223 -4.3009 -1.4379 14 6 6.4098 -4.0892 -0.8287 15 1 6.9572 -3.3540 -1.4184 16 7 7.1416 -5.3583 -0.8280 17 6 7.8239 -5.7434 -1.9248 18 8 7.8323 -5.0389 -2.9121 19 6 8.5762 -7.0491 -1.9243 20 1 9.3225 -7.0417 -1.1300 21 6 7.5938 -8.2121 -1.7003 22 6 8.3634 -9.5146 -2.0366 23 16 9.2710 -9.0559 -3.5615 24 8 8.4706 -9.3598 -4.6956 25 8 10.6031 -9.5442 -3.4815 26 6 9.2707 -7.2476 -3.2863 27 6 6.2642 -3.5843 0.6082 28 6 5.4996 -2.2584 0.6080 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3619 -0.0014 31 1 3.2693 -3.1268 -1.8719 32 1 4.8049 -2.2401 -2.0278 33 1 5.1264 -4.6603 -2.4616 34 1 4.4749 -5.0361 -0.8482 35 1 7.1351 -5.9216 -0.0383 36 1 7.2687 -8.2311 -0.6602 37 1 6.7322 -8.1052 -2.3593 38 1 7.6705 -10.3336 -2.2304 39 1 9.0568 -9.7775 -1.2379 40 1 8.7097 -6.7450 -4.0741 41 1 10.2927 -6.8703 -3.2486 42 1 7.2526 -3.4339 1.0424 43 1 5.7167 -4.3196 1.1980 44 1 6.0467 -1.5231 0.0182 45 1 5.3959 -1.8989 1.6317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034684827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:15 Heat of formation + Delta-G solvation = -107.713704 kcal Electronic energy + Delta-G solvation = -26385.683983 eV Core-core repulsion = 22530.052251 eV Total energy + Delta-G solvation = -3855.631731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.56747 -38.41612 -37.48614 -36.56629 -36.24332 -35.13964 -33.13285 -31.08262 -30.62785 -30.53863 -28.15535 -26.08856 -23.64695 -22.86609 -22.50027 -21.02400 -20.48217 -19.70416 -19.29716 -18.12185 -17.51392 -17.44346 -16.49628 -16.24876 -16.08081 -15.43258 -15.18347 -14.72697 -14.58902 -14.38154 -14.13757 -13.92613 -13.51796 -13.17094 -12.97560 -12.82792 -12.77329 -12.59809 -12.54637 -12.45242 -12.22816 -12.06237 -11.83121 -11.78174 -11.31333 -11.21294 -10.96811 -10.92601 -10.85463 -10.73828 -10.32115 -10.26972 -10.01782 -9.89595 -9.59776 -9.17920 -8.91833 -7.28812 -5.78853 -3.14418 -0.46369 1.98935 2.23776 2.81784 3.04653 3.36054 3.39001 3.44191 3.52243 3.67181 3.89055 4.01127 4.20572 4.29231 4.53313 4.57457 4.75098 4.85561 4.87125 4.91454 5.01900 5.05442 5.21963 5.34489 5.40324 5.43278 5.47084 5.54751 5.67808 5.70906 5.84666 6.01418 6.08064 6.10691 6.27531 6.37121 6.42808 6.56567 6.83567 6.99529 7.19202 7.89154 7.97398 8.40399 9.18969 9.91703 10.11390 11.39504 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.033036 B = 0.002136 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.344913 B =13105.630928 C =13244.360427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 H 0.055 0.945 12 C -0.133 4.133 13 C -0.124 4.124 14 C 0.143 3.857 15 H 0.088 0.912 16 N -0.721 5.721 17 C 0.521 3.479 18 O -0.527 6.527 19 C -0.105 4.105 20 H 0.120 0.880 21 C -0.116 4.116 22 C -0.587 4.587 23 S 2.389 3.611 24 O -0.931 6.931 25 O -0.938 6.938 26 C -0.580 4.580 27 C -0.118 4.118 28 C -0.125 4.125 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.399 0.601 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.155 0.845 41 H 0.143 0.857 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.228 -19.465 0.453 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.392 5.392 10 C 0.073 3.927 11 H 0.073 0.927 12 C -0.174 4.174 13 C -0.164 4.164 14 C 0.039 3.961 15 H 0.107 0.893 16 N -0.372 5.372 17 C 0.305 3.695 18 O -0.403 6.403 19 C -0.127 4.127 20 H 0.138 0.862 21 C -0.155 4.155 22 C -0.717 4.717 23 S 2.572 3.428 24 O -0.929 6.929 25 O -0.935 6.935 26 C -0.710 4.710 27 C -0.157 4.157 28 C -0.163 4.163 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.233 0.767 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.173 0.827 41 H 0.162 0.838 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.350 -19.552 -1.002 28.967 hybrid contribution 0.200 1.485 0.998 1.800 sum 21.550 -18.067 -0.004 28.122 Atomic orbital electron populations 1.69697 1.05111 1.25830 1.57574 1.24682 0.95238 0.97236 1.02083 0.86550 0.79244 0.85010 0.77714 1.21137 1.20308 1.21789 1.19065 0.80604 0.94650 1.42917 0.89240 1.42796 1.04014 1.02058 1.90288 1.20213 0.90184 0.89161 0.93188 0.92686 1.22197 1.00073 0.94719 1.00413 1.21899 0.94502 0.99320 1.00636 1.21179 0.92841 0.84456 0.97599 0.89347 1.46136 1.51440 1.23658 1.15938 1.20051 0.79099 0.86945 0.83380 1.90745 1.61865 1.54578 1.33069 1.21740 0.98550 0.94843 0.97616 0.86222 1.22224 0.98131 0.88744 1.06365 1.30625 1.13666 1.05959 1.21416 1.09098 0.76150 0.79348 0.78165 1.93651 1.70418 1.82478 1.46311 1.93624 1.34896 1.77950 1.87074 1.30544 1.10522 1.24739 1.05152 1.21746 1.00537 0.98528 0.94878 1.21805 0.96913 0.95810 1.01811 0.93070 0.80690 0.91240 0.92595 0.92153 0.92002 0.76688 0.87540 0.88505 0.83967 0.84085 0.82679 0.83838 0.91779 0.91287 0.92080 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.90 27.74 -169.99 -4.71 17.18 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 9 N -0.75 -17.09 4.92 -53.42 -0.26 -17.36 16 10 C 0.18 3.22 2.77 -67.93 -0.19 3.03 16 11 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 12 C -0.13 -2.21 5.50 -26.73 -0.15 -2.36 16 13 C -0.12 -1.60 5.49 -26.73 -0.15 -1.75 16 14 C 0.14 1.55 2.45 -67.93 -0.17 1.38 16 15 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 16 N -0.72 -5.55 5.00 -53.81 -0.27 -5.82 16 17 C 0.52 4.65 7.10 -10.98 -0.08 4.57 16 18 O -0.53 -7.13 15.09 5.55 0.08 -7.05 16 19 C -0.10 -0.50 2.95 -90.71 -0.27 -0.77 16 20 H 0.12 0.22 8.14 -51.93 -0.42 -0.21 16 21 C -0.12 -0.36 5.65 -25.23 -0.14 -0.50 16 22 C -0.59 -1.50 7.31 38.20 0.28 -1.22 16 23 S 2.39 14.53 6.10 -107.50 -0.66 13.87 16 24 O -0.93 -9.69 18.15 -57.71 -1.05 -10.74 16 25 O -0.94 -8.80 18.15 -57.71 -1.05 -9.85 16 26 C -0.58 -3.31 6.48 37.77 0.24 -3.06 16 27 C -0.12 -1.19 5.39 -26.70 -0.14 -1.33 16 28 C -0.12 -1.71 5.39 -26.70 -0.14 -1.86 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.36 8.14 5.66 -40.82 -0.23 7.91 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 1.72 8.53 -40.82 -0.35 1.37 16 36 H 0.11 0.10 8.12 -51.93 -0.42 -0.32 16 37 H 0.10 0.38 8.11 -51.93 -0.42 -0.04 16 38 H 0.14 0.24 8.14 -51.92 -0.42 -0.19 16 39 H 0.14 0.09 8.14 -51.93 -0.42 -0.34 16 40 H 0.16 1.17 6.98 -51.93 -0.36 0.81 16 41 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -39.27 369.39 -9.99 -49.26 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.26 Total: 3.94 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -1.15 Total: -10.69 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.24 Total: -51.49 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -2.01 Total: -27.63 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: 14.53 SS G_CDS: -0.66 Total: 13.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.27 -9.99 -49.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034684827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.454 kcal (2) G-P(sol) polarization free energy of solvation -39.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds