Wall clock time and date at job start Tue Mar 31 2020 07:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47380 * 2 1 4 4 C 1.50703 * 109.46801 * 240.00152 * 2 1 3 5 5 O 1.21284 * 120.00007 * 264.99514 * 4 2 1 6 6 N 1.34775 * 120.00039 * 85.00173 * 4 2 1 7 7 C 1.46894 * 120.46571 * 179.97438 * 6 4 2 8 8 C 1.53358 * 108.74146 * 124.34194 * 7 6 4 9 9 C 1.52549 * 109.12421 * 52.26183 * 8 7 6 10 10 C 1.52961 * 114.06199 * 75.54005 * 9 8 7 11 11 N 1.47165 * 87.85319 * 139.43717 * 10 9 8 12 12 C 1.36942 * 135.99901 * 153.07659 * 11 10 9 13 13 H 1.07998 * 120.00088 * 353.57931 * 12 11 10 14 14 C 1.38810 * 119.99763 * 173.57292 * 12 11 10 15 15 N 1.31616 * 120.00011 * 5.05682 * 14 12 11 16 16 Si 1.86800 * 119.99764 * 185.04980 * 14 12 11 17 17 H 1.48497 * 109.46814 * 94.99385 * 16 14 12 18 18 H 1.48504 * 109.47065 * 214.98912 * 16 14 12 19 19 H 1.48494 * 109.47240 * 334.98831 * 16 14 12 20 20 C 1.47165 * 87.99796 * 333.33896 * 11 10 9 21 21 C 1.52551 * 113.43633 * 302.66526 * 9 8 7 22 22 C 1.46890 * 120.45946 * 359.97438 * 6 4 2 23 23 S 1.81400 * 109.47346 * 120.00160 * 2 1 3 24 24 C 1.81399 * 101.92340 * 305.00024 * 23 2 1 25 25 O 1.42101 * 108.57755 * 59.48635 * 23 2 1 26 26 O 1.42101 * 108.58127 * 190.50877 * 23 2 1 27 27 H 1.08997 * 109.47430 * 59.99390 * 1 2 3 28 28 H 1.08998 * 109.46934 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46939 * 299.99857 * 1 2 3 30 30 H 1.09000 * 109.58996 * 4.56620 * 7 6 4 31 31 H 1.09002 * 109.59438 * 244.12423 * 7 6 4 32 32 H 1.08999 * 109.52400 * 292.36777 * 8 7 6 33 33 H 1.08998 * 109.58616 * 172.19697 * 8 7 6 34 34 H 1.08997 * 113.48983 * 24.69723 * 10 9 8 35 35 H 1.08996 * 113.49065 * 254.18155 * 10 9 8 36 36 H 0.97007 * 119.99758 * 179.97438 * 15 14 12 37 37 H 1.09008 * 113.48742 * 141.41599 * 20 11 10 38 38 H 1.08998 * 113.48747 * 271.91275 * 20 11 10 39 39 H 1.08994 * 109.53094 * 177.21487 * 21 9 8 40 40 H 1.08999 * 109.52893 * 297.43242 * 21 9 8 41 41 H 1.08999 * 109.59224 * 355.42558 * 22 6 4 42 42 H 1.08999 * 109.58841 * 115.87264 * 22 6 4 43 43 H 1.08997 * 109.46960 * 59.99522 * 24 23 2 44 44 H 1.08994 * 109.47656 * 180.02562 * 24 23 2 45 45 H 1.09005 * 109.46716 * 300.00034 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.3207 -1.8872 -1.1761 6 7 2.1609 -0.0380 -2.3915 7 6 2.6500 -0.7202 -3.5970 8 6 1.6183 -0.5410 -4.7174 9 6 1.2944 0.9423 -4.8659 10 6 2.3852 1.7515 -5.5696 11 7 1.3157 2.4730 -6.2777 12 6 1.1696 3.7126 -6.8410 13 1 1.9463 4.4539 -6.7241 14 6 0.0232 4.0163 -7.5624 15 7 -0.9658 3.1500 -7.6217 16 14 -0.1158 5.6547 -8.4488 17 1 0.3033 5.4891 -9.8638 18 1 -1.5235 6.1253 -8.4014 19 1 0.7621 6.6522 -7.7860 20 6 0.4701 1.2805 -6.1090 21 6 0.7761 1.5817 -3.5815 22 6 1.8141 1.3872 -2.4689 23 16 2.1347 -0.8552 1.4811 24 6 1.2999 0.0575 2.8079 25 8 1.6408 -2.1875 1.4679 26 8 3.5342 -0.6351 1.5913 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.7820 -1.7818 -3.3880 31 1 3.6013 -0.2847 -3.9029 32 1 0.7100 -1.0891 -4.4672 33 1 2.0265 -0.9205 -5.6541 34 1 3.0143 1.1523 -6.2277 35 1 2.9617 2.3831 -4.8938 36 1 -1.7671 3.3624 -8.1256 37 1 -0.5717 1.5142 -5.8891 38 1 0.5790 0.5533 -6.9136 39 1 0.6126 2.6468 -3.7449 40 1 -0.1620 1.1083 -3.2916 41 1 1.3953 1.7137 -1.5170 42 1 2.7074 1.9689 -2.6965 43 1 0.2203 -0.0210 2.6795 44 1 1.5829 -0.3636 3.7726 45 1 1.5950 1.1061 2.7690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035735940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:58 Heat of formation + Delta-G solvation = -36.695592 kcal Electronic energy + Delta-G solvation = -27632.486959 eV Core-core repulsion = 23779.934804 eV Total energy + Delta-G solvation = -3852.552155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.64266 -39.02757 -37.21830 -36.23835 -35.93483 -34.11836 -32.52170 -31.05322 -30.48489 -29.76391 -27.08209 -25.41395 -24.89083 -23.53859 -23.26481 -21.49836 -20.03624 -18.88907 -18.14939 -17.34451 -17.04044 -16.72167 -16.41905 -16.02370 -15.46798 -15.20763 -14.91781 -14.75715 -14.27028 -13.95966 -13.83799 -13.66565 -13.58631 -13.46512 -13.22646 -12.69929 -12.60628 -12.36430 -12.28503 -12.24269 -12.19275 -12.15367 -11.74944 -11.31384 -11.16953 -11.14510 -10.97121 -10.90140 -10.79354 -10.49370 -10.33050 -9.98547 -9.80910 -9.68312 -9.27115 -8.85685 -8.57903 -6.91280 -5.83927 -3.15015 -0.40070 2.28320 2.41901 2.73244 3.34106 3.39617 3.41513 3.46351 3.68083 4.00361 4.18864 4.39019 4.40576 4.48684 4.66487 4.86532 4.93035 4.95556 5.06152 5.16272 5.23250 5.26385 5.30898 5.40966 5.51536 5.56402 5.63260 5.74786 5.78862 5.90342 6.04874 6.19732 6.28809 6.37052 6.50006 6.53921 6.71767 6.73414 7.17171 7.22935 7.27551 7.50561 7.87004 7.91556 8.98025 9.64745 10.60211 11.33992 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.002837 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.922951 B = 9868.899197 C =10291.044363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.617 4.617 3 H 0.156 0.844 4 C 0.541 3.459 5 O -0.532 6.532 6 N -0.590 5.590 7 C 0.112 3.888 8 C -0.114 4.114 9 C -0.118 4.118 10 C 0.127 3.873 11 N -0.608 5.608 12 C -0.219 4.219 13 H 0.080 0.920 14 C -0.006 4.006 15 N -0.917 5.917 16 Si 0.909 3.091 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.280 1.280 20 C 0.170 3.830 21 C -0.094 4.094 22 C 0.100 3.900 23 S 2.447 3.553 24 C -0.662 4.662 25 O -0.910 6.910 26 O -0.932 6.932 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.036 0.964 36 H 0.253 0.747 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.478 -4.684 19.117 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.726 4.726 3 H 0.174 0.826 4 C 0.326 3.674 5 O -0.409 6.409 6 N -0.322 5.322 7 C -0.010 4.010 8 C -0.153 4.153 9 C -0.120 4.120 10 C 0.000 4.000 11 N -0.334 5.334 12 C -0.346 4.346 13 H 0.098 0.902 14 C -0.203 4.203 15 N -0.564 5.564 16 Si 0.739 3.261 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.045 3.955 21 C -0.132 4.132 22 C -0.022 4.022 23 S 2.624 3.376 24 C -0.811 4.811 25 O -0.907 6.907 26 O -0.929 6.929 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.039 -5.703 18.967 20.038 hybrid contribution -0.680 1.846 -0.896 2.161 sum 2.359 -3.858 18.072 18.629 Atomic orbital electron populations 1.21679 0.87431 1.05296 1.05385 1.30700 1.09183 1.15575 1.17115 0.82612 1.19100 0.78124 0.86452 0.83703 1.90857 1.50804 1.14775 1.84501 1.47984 1.63708 1.11269 1.09226 1.21755 0.97183 0.98553 0.83459 1.21738 0.98830 0.96832 0.97866 1.22116 1.00822 0.92826 0.96186 1.22406 0.91946 0.92527 0.93079 1.45565 1.10184 1.10319 1.67299 1.18917 1.02867 0.86809 1.26000 0.90210 1.24815 0.96836 0.98349 1.00292 1.69844 1.06288 1.35237 1.44990 0.86155 0.76996 0.82963 0.80000 1.21641 1.21719 1.20561 1.21969 0.96493 0.87227 0.89853 1.21432 0.96683 1.02685 0.92404 1.22041 0.99887 0.80070 1.00227 1.07504 0.76097 0.76654 0.77388 1.30400 1.15350 1.15851 1.19500 1.93602 1.81532 1.30636 1.84932 1.93595 1.27692 1.86438 1.85221 0.89272 0.89663 0.90041 0.89009 0.90947 0.91678 0.90464 0.95125 0.94582 0.93652 0.91607 0.95636 0.89125 0.91945 0.89912 0.90558 0.84888 0.84932 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.70 37.16 0.32 -0.60 16 2 C -0.62 -5.38 2.29 -27.88 -0.06 -5.45 16 3 H 0.16 0.83 6.44 -51.93 -0.33 0.50 16 4 C 0.54 7.24 6.82 -10.98 -0.07 7.16 16 5 O -0.53 -9.08 14.87 -9.38 -0.14 -9.22 16 6 N -0.59 -7.54 2.94 -172.59 -0.51 -8.05 16 7 C 0.11 1.48 6.35 -3.64 -0.02 1.46 16 8 C -0.11 -1.61 5.30 -26.78 -0.14 -1.75 16 9 C -0.12 -1.97 0.84 -155.02 -0.13 -2.10 16 10 C 0.13 2.40 7.63 -8.21 -0.06 2.34 16 11 N -0.61 -14.69 3.55 -184.67 -0.65 -15.35 16 12 C -0.22 -5.88 10.74 -15.06 -0.16 -6.04 16 13 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 14 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 15 N -0.92 -26.39 11.63 55.49 0.65 -25.75 16 16 Si 0.91 21.47 29.56 -169.99 -5.02 16.45 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.17 3.76 6.46 -8.22 -0.05 3.71 16 21 C -0.09 -1.36 5.28 -26.75 -0.14 -1.50 16 22 C 0.10 1.14 5.94 -3.62 -0.02 1.12 16 23 S 2.45 23.55 4.52 -107.50 -0.49 23.06 16 24 C -0.66 -2.71 10.01 101.05 1.01 -1.70 16 25 O -0.91 -12.50 17.21 -64.29 -1.11 -13.60 16 26 O -0.93 -12.37 18.10 -57.83 -1.05 -13.42 16 27 H 0.09 0.62 7.51 -51.93 -0.39 0.23 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.23 6.39 -51.93 -0.33 -0.10 16 30 H 0.09 1.26 6.97 -51.93 -0.36 0.89 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 35 H 0.04 0.64 7.53 -51.93 -0.39 0.25 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 37 H 0.07 1.62 7.31 -51.92 -0.38 1.24 16 38 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.09 1.52 7.95 -51.93 -0.41 1.11 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.68 4.99 -51.93 -0.26 0.42 16 42 H 0.08 0.86 7.60 -51.93 -0.39 0.47 16 43 H 0.13 0.28 6.77 -51.93 -0.35 -0.07 16 44 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -37.77 364.23 -9.41 -47.18 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.95 Total: -3.16 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 0.37 Total: -3.62 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.52 Total: -49.15 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -2.29 Total: -36.24 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 23.55 SS G_CDS: -0.49 Total: 23.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.77 -9.41 -47.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035735940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.483 kcal (2) G-P(sol) polarization free energy of solvation -37.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds