Wall clock time and date at job start Tue Mar 31 2020 07:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47240 * 2 1 4 4 C 1.50702 * 109.46863 * 119.99952 * 2 1 3 5 5 O 1.21280 * 120.00007 * 100.00100 * 4 2 1 6 6 N 1.34773 * 119.99919 * 279.99827 * 4 2 1 7 7 C 1.46884 * 120.46696 * 359.72854 * 6 4 2 8 8 C 1.52860 * 109.01474 * 235.48353 * 7 6 4 9 9 C 1.52670 * 109.17939 * 307.81967 * 8 7 6 10 10 C 1.53483 * 113.62478 * 188.98973 * 9 8 7 11 11 N 1.47669 * 85.98838 * 137.70698 * 10 9 8 12 12 C 1.36936 * 134.45377 * 155.70434 * 11 10 9 13 13 H 1.08006 * 119.99446 * 179.97438 * 12 11 10 14 14 C 1.38813 * 120.00290 * 359.96965 * 12 11 10 15 15 N 1.31622 * 119.99575 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00062 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46929 * 60.00073 * 16 14 12 18 18 H 1.48504 * 109.47209 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47254 * 300.00299 * 16 14 12 20 20 C 1.47670 * 91.08657 * 335.68084 * 11 10 9 21 21 C 1.52668 * 113.18578 * 57.45551 * 9 8 7 22 22 C 1.46885 * 120.46528 * 180.02562 * 6 4 2 23 23 S 1.81398 * 109.47055 * 240.00001 * 2 1 3 24 24 C 1.81391 * 101.92304 * 60.00174 * 23 2 1 25 25 O 1.42105 * 108.57879 * 305.51255 * 23 2 1 26 26 O 1.42097 * 108.57629 * 174.49016 * 23 2 1 27 27 H 1.09004 * 109.47067 * 300.00382 * 1 2 3 28 28 H 1.09004 * 109.47046 * 59.99809 * 1 2 3 29 29 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.59187 * 355.30894 * 7 6 4 31 31 H 1.08997 * 109.59034 * 115.74933 * 7 6 4 32 32 H 1.08997 * 109.60818 * 187.84007 * 8 7 6 33 33 H 1.09001 * 109.44584 * 67.69696 * 8 7 6 34 34 H 1.09000 * 113.79269 * 251.97820 * 10 9 8 35 35 H 1.09004 * 113.78902 * 23.44122 * 10 9 8 36 36 H 0.97000 * 119.99568 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.78974 * 270.04819 * 20 11 10 38 38 H 1.09000 * 113.78923 * 138.57781 * 20 11 10 39 39 H 1.09001 * 109.53396 * 182.52054 * 21 9 8 40 40 H 1.09003 * 109.59125 * 62.33896 * 21 9 8 41 41 H 1.09005 * 109.58908 * 244.25890 * 22 6 4 42 42 H 1.09000 * 109.58818 * 4.68514 * 22 6 4 43 43 H 1.09003 * 109.47583 * 300.00163 * 24 23 2 44 44 H 1.09003 * 109.47643 * 59.99714 * 24 23 2 45 45 H 1.09003 * 109.47254 * 179.97438 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4064 -1.8617 1.1558 6 7 2.0659 -0.0664 2.4139 7 6 1.6209 1.3298 2.5149 8 6 2.7474 2.1691 3.1176 9 6 3.2187 1.5180 4.4155 10 6 4.1954 2.3866 5.2201 11 7 3.4311 1.9613 6.4099 12 6 3.7154 1.8565 7.7453 13 1 2.9585 1.5085 8.4328 14 6 4.9762 2.1975 8.2154 15 7 5.8986 2.6211 7.3775 16 14 5.3642 2.0538 10.0370 17 1 5.1885 0.6444 10.4708 18 1 6.7677 2.4744 10.2789 19 1 4.4448 2.9276 10.8094 20 6 2.2372 1.6950 5.5826 21 6 3.6917 0.0785 4.2286 22 6 2.5540 -0.7488 3.6196 23 16 2.1347 -0.8551 -1.4811 24 6 1.4230 0.1514 -2.8118 25 8 1.5479 -2.1485 -1.5284 26 8 3.5496 -0.7331 -1.5284 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.3764 1.7081 1.5224 31 1 0.7422 1.3878 3.1571 32 1 2.3828 3.1750 3.3260 33 1 3.5778 2.2211 2.4135 34 1 5.2228 2.0229 5.2044 35 1 4.1163 3.4522 5.0045 36 1 6.7795 2.8597 7.7060 37 1 1.5763 2.5550 5.4747 38 1 1.7084 0.7816 5.8548 39 1 3.9711 -0.3417 5.1948 40 1 4.5529 0.0606 3.5607 41 1 1.7424 -0.8406 4.3414 42 1 2.9238 -1.7392 3.3545 43 1 0.3361 0.1471 -2.7291 44 1 1.7894 1.1747 -2.7291 45 1 1.7161 -0.2622 -3.7767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035735941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:04 Heat of formation + Delta-G solvation = -39.321637 kcal Electronic energy + Delta-G solvation = -27606.261113 eV Core-core repulsion = 23753.595084 eV Total energy + Delta-G solvation = -3852.666029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.62394 -38.91505 -37.21513 -36.22794 -35.91014 -34.11543 -32.46810 -31.05757 -30.44367 -29.76003 -26.98234 -25.51198 -24.99082 -23.61429 -23.12113 -21.37402 -20.08381 -18.87984 -18.22036 -17.29746 -16.97929 -16.72512 -16.31752 -16.07139 -15.52634 -15.27306 -14.89567 -14.73019 -14.19621 -13.86134 -13.81858 -13.76748 -13.63796 -13.55889 -13.19018 -12.65000 -12.56453 -12.43511 -12.38241 -12.22288 -12.15947 -12.12259 -11.76124 -11.32046 -11.17410 -11.08726 -10.93347 -10.85384 -10.78987 -10.41983 -10.24807 -10.07505 -9.74358 -9.60606 -9.39403 -8.79784 -8.59495 -6.87770 -5.77100 -3.09179 -0.40912 2.29491 2.41592 2.71927 3.38757 3.43129 3.44367 3.46844 3.65859 3.98990 4.15422 4.36772 4.42968 4.45092 4.64344 4.79533 4.87442 4.94859 5.08033 5.13060 5.22496 5.24742 5.25847 5.41155 5.45158 5.55391 5.63261 5.78494 5.83552 5.87708 6.08061 6.20111 6.23912 6.34541 6.54731 6.59698 6.75936 6.80688 7.20990 7.23359 7.34722 7.57201 7.86696 7.98251 9.04426 9.70730 10.60231 11.39702 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.031486 B = 0.002721 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.060914 B =10289.411353 C =10357.437528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.619 4.619 3 H 0.157 0.843 4 C 0.543 3.457 5 O -0.533 6.533 6 N -0.589 5.589 7 C 0.104 3.896 8 C -0.122 4.122 9 C -0.110 4.110 10 C 0.173 3.827 11 N -0.608 5.608 12 C -0.224 4.224 13 H 0.077 0.923 14 C -0.007 4.007 15 N -0.921 5.921 16 Si 0.910 3.090 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.286 1.286 20 C 0.127 3.873 21 C -0.098 4.098 22 C 0.111 3.889 23 S 2.449 3.551 24 C -0.663 4.663 25 O -0.914 6.914 26 O -0.926 6.926 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.254 0.746 37 H 0.030 0.970 38 H 0.040 0.960 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 -0.635 -20.145 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.727 4.727 3 H 0.175 0.825 4 C 0.328 3.672 5 O -0.411 6.411 6 N -0.321 5.321 7 C -0.019 4.019 8 C -0.161 4.161 9 C -0.111 4.111 10 C 0.048 3.952 11 N -0.334 5.334 12 C -0.352 4.352 13 H 0.095 0.905 14 C -0.203 4.203 15 N -0.568 5.568 16 Si 0.741 3.259 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.213 1.213 20 C 0.001 3.999 21 C -0.136 4.136 22 C -0.010 4.010 23 S 2.625 3.375 24 C -0.812 4.812 25 O -0.911 6.911 26 O -0.923 6.923 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.209 -1.956 -19.890 23.420 hybrid contribution -0.279 1.248 1.196 1.751 sum -12.488 -0.708 -18.694 22.492 Atomic orbital electron populations 1.21652 0.87632 1.05274 1.05057 1.30726 1.08980 1.15713 1.17304 0.82511 1.19070 0.78405 0.86168 0.83591 1.90850 1.48693 1.16588 1.84936 1.47965 1.62585 1.13446 1.08132 1.21841 0.98148 0.80375 1.01512 1.21790 0.97711 0.98746 0.97851 1.22408 1.00059 0.96171 0.92496 1.22232 0.96361 0.93961 0.82632 1.45937 1.08146 1.76401 1.02940 1.18956 0.96572 1.37925 0.81701 0.90471 1.24760 0.96233 1.01536 0.97808 1.69803 1.04090 1.49973 1.32903 0.86234 0.77179 0.77818 0.84713 1.21098 1.21580 1.21285 1.22586 0.91117 0.97160 0.89084 1.21503 0.96491 0.93825 1.01784 1.21824 0.97564 0.96984 0.84655 1.07471 0.76019 0.76687 0.77302 1.30413 1.14263 1.16789 1.19731 1.93589 1.79163 1.33370 1.84983 1.93607 1.26678 1.86667 1.85363 0.89590 0.90150 0.89637 0.90091 0.90637 0.90391 0.91561 0.90907 0.95751 0.93617 0.95218 0.94164 0.89159 0.91844 0.90959 0.88943 0.85044 0.85135 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.71 37.16 0.32 -0.42 16 2 C -0.62 -5.13 2.25 -27.88 -0.06 -5.20 16 3 H 0.16 0.76 6.55 -51.93 -0.34 0.42 16 4 C 0.54 7.28 6.87 -10.99 -0.08 7.21 16 5 O -0.53 -9.35 15.04 -3.35 -0.05 -9.40 16 6 N -0.59 -7.54 2.95 -172.98 -0.51 -8.05 16 7 C 0.10 1.05 5.49 -3.90 -0.02 1.02 16 8 C -0.12 -1.55 5.24 -26.97 -0.14 -1.69 16 9 C -0.11 -1.87 0.77 -154.42 -0.12 -1.99 16 10 C 0.17 3.89 6.64 -3.16 -0.02 3.87 16 11 N -0.61 -14.94 3.53 -179.75 -0.64 -15.57 16 12 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 13 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 15 N -0.92 -26.97 11.39 55.49 0.63 -26.34 16 16 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.13 2.39 7.73 -3.14 -0.02 2.36 16 21 C -0.10 -1.64 5.21 -26.75 -0.14 -1.78 16 22 C 0.11 1.61 6.30 -3.68 -0.02 1.59 16 23 S 2.45 23.74 4.32 -107.50 -0.46 23.27 16 24 C -0.66 -2.54 10.17 101.05 1.03 -1.51 16 25 O -0.91 -12.38 17.40 -62.66 -1.09 -13.47 16 26 O -0.93 -12.94 18.10 -57.83 -1.05 -13.98 16 27 H 0.09 0.42 7.12 -51.93 -0.37 0.05 16 28 H 0.08 0.13 6.56 -51.93 -0.34 -0.21 16 29 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 30 H 0.08 0.54 5.05 -51.93 -0.26 0.28 16 31 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 35 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 38 H 0.04 0.73 7.41 -51.93 -0.38 0.35 16 39 H 0.09 1.74 8.01 -51.93 -0.42 1.33 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 42 H 0.09 1.42 6.98 -51.93 -0.36 1.06 16 43 H 0.13 0.20 6.87 -51.92 -0.36 -0.16 16 44 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 45 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -38.68 363.45 -9.17 -47.86 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.93 Total: -3.65 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 0.47 Total: -3.14 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.51 Total: -49.96 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -2.19 Total: -36.85 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 23.74 SS G_CDS: -0.46 Total: 23.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.68 -9.17 -47.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035735941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.534 kcal (2) G-P(sol) polarization free energy of solvation -38.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds