Wall clock time and date at job start Tue Mar 31 2020 07:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47240 * 2 1 4 4 C 1.50702 * 109.46863 * 119.99952 * 2 1 3 5 5 O 1.21280 * 120.00007 * 100.00100 * 4 2 1 6 6 N 1.34773 * 119.99919 * 279.99827 * 4 2 1 7 7 C 1.46884 * 120.46696 * 359.72854 * 6 4 2 8 8 C 1.52860 * 109.01474 * 235.48353 * 7 6 4 9 9 C 1.52670 * 109.17939 * 307.81967 * 8 7 6 10 10 C 1.53483 * 113.62478 * 188.98973 * 9 8 7 11 11 N 1.47669 * 85.98838 * 137.70698 * 10 9 8 12 12 C 1.36936 * 134.45377 * 155.70434 * 11 10 9 13 13 H 1.08006 * 119.99446 * 179.97438 * 12 11 10 14 14 C 1.38813 * 120.00290 * 359.96965 * 12 11 10 15 15 N 1.31622 * 119.99575 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00062 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46929 * 60.00073 * 16 14 12 18 18 H 1.48504 * 109.47209 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47254 * 300.00299 * 16 14 12 20 20 C 1.47670 * 91.08657 * 335.68084 * 11 10 9 21 21 C 1.52668 * 113.18578 * 57.45551 * 9 8 7 22 22 C 1.46885 * 120.46528 * 180.02562 * 6 4 2 23 23 S 1.81398 * 109.47055 * 240.00001 * 2 1 3 24 24 C 1.81391 * 101.92304 * 60.00174 * 23 2 1 25 25 O 1.42105 * 108.57879 * 305.51255 * 23 2 1 26 26 O 1.42097 * 108.57629 * 174.49016 * 23 2 1 27 27 H 1.09004 * 109.47067 * 300.00382 * 1 2 3 28 28 H 1.09004 * 109.47046 * 59.99809 * 1 2 3 29 29 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.59187 * 355.30894 * 7 6 4 31 31 H 1.08997 * 109.59034 * 115.74933 * 7 6 4 32 32 H 1.08997 * 109.60818 * 187.84007 * 8 7 6 33 33 H 1.09001 * 109.44584 * 67.69696 * 8 7 6 34 34 H 1.09000 * 113.79269 * 251.97820 * 10 9 8 35 35 H 1.09004 * 113.78902 * 23.44122 * 10 9 8 36 36 H 0.97000 * 119.99568 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.78974 * 270.04819 * 20 11 10 38 38 H 1.09000 * 113.78923 * 138.57781 * 20 11 10 39 39 H 1.09001 * 109.53396 * 182.52054 * 21 9 8 40 40 H 1.09003 * 109.59125 * 62.33896 * 21 9 8 41 41 H 1.09005 * 109.58908 * 244.25890 * 22 6 4 42 42 H 1.09000 * 109.58818 * 4.68514 * 22 6 4 43 43 H 1.09003 * 109.47583 * 300.00163 * 24 23 2 44 44 H 1.09003 * 109.47643 * 59.99714 * 24 23 2 45 45 H 1.09003 * 109.47254 * 179.97438 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4064 -1.8617 1.1558 6 7 2.0659 -0.0664 2.4139 7 6 1.6209 1.3298 2.5149 8 6 2.7474 2.1691 3.1176 9 6 3.2187 1.5180 4.4155 10 6 4.1954 2.3866 5.2201 11 7 3.4311 1.9613 6.4099 12 6 3.7154 1.8565 7.7453 13 1 2.9585 1.5085 8.4328 14 6 4.9762 2.1975 8.2154 15 7 5.8986 2.6211 7.3775 16 14 5.3642 2.0538 10.0370 17 1 5.1885 0.6444 10.4708 18 1 6.7677 2.4744 10.2789 19 1 4.4448 2.9276 10.8094 20 6 2.2372 1.6950 5.5826 21 6 3.6917 0.0785 4.2286 22 6 2.5540 -0.7488 3.6196 23 16 2.1347 -0.8551 -1.4811 24 6 1.4230 0.1514 -2.8118 25 8 1.5479 -2.1485 -1.5284 26 8 3.5496 -0.7331 -1.5284 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.3764 1.7081 1.5224 31 1 0.7422 1.3878 3.1571 32 1 2.3828 3.1750 3.3260 33 1 3.5778 2.2211 2.4135 34 1 5.2228 2.0229 5.2044 35 1 4.1163 3.4522 5.0045 36 1 6.7795 2.8597 7.7060 37 1 1.5763 2.5550 5.4747 38 1 1.7084 0.7816 5.8548 39 1 3.9711 -0.3417 5.1948 40 1 4.5529 0.0606 3.5607 41 1 1.7424 -0.8406 4.3414 42 1 2.9238 -1.7392 3.3545 43 1 0.3361 0.1471 -2.7291 44 1 1.7894 1.1747 -2.7291 45 1 1.7161 -0.2622 -3.7767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035735941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:02 Heat of formation + Delta-G solvation = -70.014896 kcal Electronic energy + Delta-G solvation = -27607.592072 eV Core-core repulsion = 23753.595084 eV Total energy + Delta-G solvation = -3853.996988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.76022 -40.29557 -38.02634 -37.27306 -36.94706 -34.92716 -34.26107 -32.15822 -31.89050 -30.17663 -28.69588 -26.79268 -26.14646 -24.89069 -24.27712 -22.92147 -21.19676 -19.65626 -19.23681 -18.69971 -18.32201 -17.88597 -17.06720 -16.99787 -16.81722 -16.39229 -16.21161 -16.12009 -15.63612 -15.12686 -15.03183 -14.69551 -14.19050 -14.09832 -14.02943 -13.91050 -13.68326 -13.54744 -13.19492 -13.13878 -13.06577 -13.00734 -12.93851 -12.84852 -12.80478 -12.63320 -12.25223 -12.17541 -11.93351 -11.65761 -11.60055 -11.42993 -11.27461 -11.06524 -10.86698 -10.80304 -9.72585 -8.86720 -7.88932 -5.20570 -1.03333 1.34990 1.43463 1.46306 1.52326 1.76671 1.83631 2.47799 2.79055 3.06103 3.27113 3.31907 3.42507 3.60009 3.72413 3.83879 3.93347 4.03803 4.13090 4.15582 4.26884 4.30867 4.42297 4.58336 4.65469 4.68719 4.71215 4.74602 4.78315 4.86917 4.92828 5.01905 5.03160 5.12593 5.20454 5.25278 5.29385 5.34111 5.43820 5.60218 5.75629 5.97977 6.24292 6.87989 6.94441 7.63992 8.60881 9.27548 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.031486 B = 0.002721 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.060914 B =10289.411353 C =10357.437528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.605 4.605 3 H 0.201 0.799 4 C 0.529 3.471 5 O -0.587 6.587 6 N -0.590 5.590 7 C 0.102 3.898 8 C -0.118 4.118 9 C -0.084 4.084 10 C 0.167 3.833 11 N -0.640 5.640 12 C -0.230 4.230 13 H 0.081 0.919 14 C -0.069 4.069 15 N -0.954 5.954 16 Si 0.973 3.027 17 H -0.279 1.279 18 H -0.297 1.297 19 H -0.276 1.276 20 C 0.132 3.868 21 C -0.092 4.092 22 C 0.120 3.880 23 S 2.418 3.582 24 C -0.623 4.623 25 O -0.974 6.974 26 O -0.990 6.990 27 H 0.100 0.900 28 H 0.131 0.869 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.020 0.980 36 H 0.246 0.754 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.859 1.799 -22.338 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.715 4.715 3 H 0.218 0.782 4 C 0.316 3.684 5 O -0.469 6.469 6 N -0.321 5.321 7 C -0.019 4.019 8 C -0.157 4.157 9 C -0.086 4.086 10 C 0.042 3.958 11 N -0.367 5.367 12 C -0.359 4.359 13 H 0.099 0.901 14 C -0.262 4.262 15 N -0.603 5.603 16 Si 0.802 3.198 17 H -0.205 1.205 18 H -0.223 1.223 19 H -0.203 1.203 20 C 0.007 3.993 21 C -0.130 4.130 22 C -0.003 4.003 23 S 2.603 3.397 24 C -0.777 4.777 25 O -0.971 6.971 26 O -0.987 6.987 27 H 0.119 0.881 28 H 0.149 0.851 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.186 0.814 44 H 0.185 0.815 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.946 0.452 -22.072 27.233 hybrid contribution 0.814 0.527 1.833 2.074 sum -15.132 0.979 -20.238 25.289 Atomic orbital electron populations 1.21892 0.84790 1.05147 1.08332 1.30666 1.11097 1.16624 1.13081 0.78221 1.20013 0.77422 0.85897 0.85023 1.90832 1.50806 1.19342 1.85882 1.48051 1.62155 1.14566 1.07305 1.22158 0.97216 0.77923 1.04621 1.21788 0.99021 0.99774 0.95081 1.22111 0.97075 0.94951 0.94414 1.22184 0.95368 0.94418 0.83877 1.46317 1.11096 1.76605 1.02642 1.19362 0.96609 1.36433 0.83503 0.90114 1.25562 0.96392 1.02395 1.01803 1.70006 1.04058 1.51808 1.34429 0.85225 0.76479 0.77938 0.80146 1.20526 1.22289 1.20252 1.22779 0.90221 0.98191 0.88077 1.21358 0.97270 0.94493 0.99888 1.21535 0.96878 0.95936 0.85916 1.07825 0.75186 0.77326 0.79319 1.30108 1.15908 1.16385 1.15348 1.93519 1.79402 1.37965 1.86181 1.93533 1.30802 1.87730 1.86627 0.88098 0.85071 0.91649 0.85190 0.88678 0.88388 0.91291 0.95202 0.96230 0.94515 0.92686 0.93319 0.92688 0.93030 0.89778 0.90674 0.81367 0.81514 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.71 71.98 0.63 -0.17 16 2 C -0.61 -7.80 2.25 29.85 0.07 -7.73 16 3 H 0.20 0.67 6.55 -2.39 -0.02 0.66 16 4 C 0.53 13.57 6.87 87.66 0.60 14.17 16 5 O -0.59 -21.52 15.04 5.49 0.08 -21.44 16 6 N -0.59 -13.86 2.95 -819.59 -2.42 -16.27 16 7 C 0.10 1.55 5.49 86.26 0.47 2.02 16 8 C -0.12 -2.58 5.24 30.44 0.16 -2.42 16 9 C -0.08 -2.81 0.77 -52.03 -0.04 -2.85 16 10 C 0.17 7.69 6.64 86.31 0.57 8.26 16 11 N -0.64 -31.86 3.53 -722.62 -2.55 -34.42 16 12 C -0.23 -12.88 10.70 84.03 0.90 -11.98 16 13 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 14 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 15 N -0.95 -58.26 11.39 21.65 0.25 -58.01 16 16 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C 0.13 4.76 7.73 86.32 0.67 5.42 16 21 C -0.09 -3.20 5.21 30.58 0.16 -3.04 16 22 C 0.12 3.50 6.30 86.40 0.54 4.04 16 23 S 2.42 43.43 4.32 -56.49 -0.24 43.18 16 24 C -0.62 -1.20 10.17 113.37 1.15 -0.05 16 25 O -0.97 -27.08 17.40 -122.76 -2.14 -29.21 16 26 O -0.99 -28.22 18.10 -127.37 -2.30 -30.53 16 27 H 0.10 0.33 7.12 -2.38 -0.02 0.31 16 28 H 0.13 -0.60 6.56 -2.39 -0.02 -0.61 16 29 H 0.06 0.68 8.06 -2.39 -0.02 0.67 16 30 H 0.13 0.77 5.05 -2.39 -0.01 0.75 16 31 H 0.10 1.19 8.07 -2.39 -0.02 1.18 16 32 H 0.10 1.85 8.12 -2.39 -0.02 1.83 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.03 1.61 7.12 -2.39 -0.02 1.59 16 35 H 0.02 0.92 8.09 -2.38 -0.02 0.90 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.06 1.78 8.07 -2.39 -0.02 1.76 16 38 H 0.05 1.68 7.41 -2.39 -0.02 1.66 16 39 H 0.05 2.28 8.01 -2.39 -0.02 2.26 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 2.24 7.49 -2.38 -0.02 2.22 16 42 H 0.07 2.46 6.98 -2.39 -0.02 2.44 16 43 H 0.17 -0.78 6.87 -2.39 -0.02 -0.80 16 44 H 0.17 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -95.91 363.45 0.04 -95.87 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: 0.99 Total: 0.28 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 6.35 Total: 2.19 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -4.72 Total: -108.70 kcal Atomic # 8 Polarization: -76.82 SS G_CDS: -4.36 Total: -81.18 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 16 Polarization: 43.43 SS G_CDS: -0.24 Total: 43.18 kcal Total: -95.91 0.04 -95.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035735941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.852 kcal (2) G-P(sol) polarization free energy of solvation -95.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds