Wall clock time and date at job start Tue Mar 31 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47394 * 2 1 4 4 H 1.09007 * 109.49510 * 304.93380 * 3 2 1 5 5 C 1.53190 * 109.49910 * 64.99614 * 3 2 1 6 6 N 1.46929 * 108.77687 * 174.61976 * 5 3 2 7 7 C 1.34771 * 120.62975 * 126.36953 * 6 5 3 8 8 O 1.21278 * 120.00181 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99809 * 180.02562 * 7 6 5 10 10 C 1.55881 * 110.82184 * 180.02562 * 9 7 6 11 11 S 1.83082 * 82.43940 * 217.26188 * 10 9 7 12 12 O 1.42105 * 111.36329 * 130.46465 * 11 10 9 13 13 O 1.42094 * 111.36046 * 269.41323 * 11 10 9 14 14 C 1.56453 * 110.95001 * 66.21887 * 9 7 6 15 15 C 1.46930 * 118.73527 * 306.64804 * 6 5 3 16 16 C 1.52757 * 109.01129 * 53.30896 * 15 6 5 17 17 C 1.53037 * 109.52629 * 184.85444 * 3 2 1 18 18 H 1.09006 * 109.46043 * 58.64388 * 17 3 2 19 19 N 1.46500 * 109.46319 * 298.67415 * 17 3 2 20 20 C 1.36931 * 120.00311 * 154.99537 * 19 17 3 21 21 H 1.07999 * 120.00139 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00056 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99877 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00271 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47372 * 89.99693 * 24 22 20 26 26 H 1.48497 * 109.47316 * 210.00622 * 24 22 20 27 27 H 1.48505 * 109.46861 * 329.99794 * 24 22 20 28 28 H 1.08996 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46582 * 300.00081 * 1 2 3 30 30 H 1.08998 * 109.47135 * 59.99823 * 1 2 3 31 31 H 1.09001 * 109.46933 * 239.99522 * 2 1 3 32 32 H 1.08998 * 109.47135 * 120.00176 * 2 1 3 33 33 H 1.09006 * 109.58707 * 54.83763 * 5 3 2 34 34 H 1.08999 * 109.70975 * 294.47840 * 5 3 2 35 35 H 1.09000 * 110.43632 * 303.20199 * 9 7 6 36 36 H 1.08999 * 114.38588 * 103.86909 * 10 9 7 37 37 H 1.09005 * 114.38110 * 330.65164 * 10 9 7 38 38 H 1.08996 * 114.37890 * 29.32933 * 14 9 7 39 39 H 1.08994 * 114.49891 * 255.98685 * 14 9 7 40 40 H 1.09004 * 109.58406 * 173.14228 * 15 6 5 41 41 H 1.08996 * 109.58902 * 293.56465 * 15 6 5 42 42 H 1.08994 * 109.56478 * 185.55075 * 16 15 6 43 43 H 1.09001 * 109.38580 * 65.51188 * 16 15 6 44 44 H 0.97004 * 119.99582 * 334.99932 * 19 17 3 45 45 H 0.97004 * 120.00401 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9816 -0.8424 5 6 1.6351 2.1280 1.3087 6 7 2.2410 3.4659 1.3489 7 6 1.4806 4.5579 1.5624 8 8 0.2842 4.4417 1.7240 9 6 2.1168 5.9236 1.6002 10 6 1.0465 7.0266 1.8601 11 16 2.0848 7.9708 0.6845 12 8 1.2993 8.5578 -0.3440 13 8 3.0913 8.7107 1.3617 14 6 2.6904 6.3126 0.1976 15 6 3.6908 3.5913 1.1458 16 6 4.0735 2.8888 -0.1556 17 6 3.5656 1.4456 -0.1221 18 1 3.8575 0.9365 -1.0407 19 7 4.1487 0.7498 1.0278 20 6 5.3870 0.1746 0.9241 21 1 5.9340 0.2340 -0.0052 22 6 5.9397 -0.4842 2.0139 23 7 5.2733 -0.5562 3.1466 24 14 7.6292 -1.2684 1.8728 25 1 8.6677 -0.2797 2.2589 26 1 7.7058 -2.4450 2.7754 27 1 7.8572 -1.7040 0.4715 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.9914 1.5401 2.1547 34 1 0.5498 2.2168 1.3566 35 1 2.8998 5.9578 2.3578 36 1 1.0445 7.4213 2.8761 37 1 0.0512 6.7845 1.4873 38 1 2.1592 5.8689 -0.6445 39 1 3.7745 6.2356 0.1153 40 1 3.9613 4.6454 1.0836 41 1 4.2180 3.1251 1.9781 42 1 5.1578 2.8905 -0.2660 43 1 3.6213 3.4142 -0.9968 44 1 3.6576 0.6967 1.8626 45 1 5.6596 -1.0162 3.9082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037860434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:24 Heat of formation + Delta-G solvation = -69.686078 kcal Electronic energy + Delta-G solvation = -27850.037803 eV Core-core repulsion = 23996.055073 eV Total energy + Delta-G solvation = -3853.982730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.48039 -38.19714 -37.47575 -36.32907 -35.51457 -34.46469 -33.80285 -31.79858 -29.58674 -28.72991 -27.74800 -25.82480 -23.98264 -23.62142 -22.95566 -20.89476 -19.60857 -19.06029 -18.35447 -17.74286 -17.32471 -16.88711 -16.80523 -16.08573 -15.53292 -15.16758 -14.74639 -14.57228 -14.16446 -13.99634 -13.80050 -13.66630 -13.35920 -13.31415 -12.99133 -12.69654 -12.50335 -12.46738 -12.39271 -12.30841 -12.09139 -11.80299 -11.50097 -11.16924 -11.06764 -10.91116 -10.87661 -10.82101 -10.68068 -10.39017 -10.34587 -10.23302 -9.88205 -9.67452 -9.63025 -9.00057 -8.38193 -7.05976 -5.86541 -3.15375 -0.32632 1.90784 2.47083 2.96444 3.19262 3.36154 3.42473 3.43891 3.59207 3.70364 3.80259 4.42257 4.50854 4.65270 4.75310 5.00528 5.08889 5.18078 5.23560 5.30061 5.40417 5.45220 5.47045 5.51443 5.61645 5.70888 5.72092 5.82564 5.99257 6.06715 6.08416 6.25209 6.28120 6.33149 6.47515 6.51445 6.61422 6.67159 6.84369 6.90546 7.52486 7.61517 8.15203 8.31735 9.43711 9.99517 10.34441 11.35683 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.003639 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.400363 B = 7692.860869 C = 8844.963678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.117 3.883 6 N -0.593 5.593 7 C 0.535 3.465 8 O -0.543 6.543 9 C -0.168 4.168 10 C -0.535 4.535 11 S 2.376 3.624 12 O -0.934 6.934 13 O -0.921 6.921 14 C -0.555 4.555 15 C 0.106 3.894 16 C -0.151 4.151 17 C 0.178 3.822 18 H 0.052 0.948 19 N -0.718 5.718 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.010 4.010 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 12.493 -5.301 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.005 4.005 6 N -0.324 5.324 7 C 0.320 3.680 8 O -0.421 6.421 9 C -0.192 4.192 10 C -0.665 4.665 11 S 2.560 3.440 12 O -0.931 6.931 13 O -0.918 6.918 14 C -0.684 4.684 15 C -0.016 4.016 16 C -0.192 4.192 17 C 0.067 3.933 18 H 0.070 0.930 19 N -0.361 5.361 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.206 4.206 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.759 13.425 -5.543 16.467 hybrid contribution 0.996 -1.678 0.684 2.068 sum -6.763 11.747 -4.859 14.399 Atomic orbital electron populations 1.21855 0.96777 1.01110 1.01326 1.21418 0.94297 0.95667 1.03440 1.21748 0.97416 0.96220 0.96893 0.91538 1.21757 0.98834 0.81322 0.98570 1.48062 1.08828 1.06419 1.69076 1.19537 0.86619 0.84788 0.77048 1.90677 1.14578 1.86081 1.50804 1.23462 0.99459 0.97861 0.98455 1.30797 1.09978 1.08305 1.17428 1.10362 0.78111 0.77490 0.78078 1.93595 1.68631 1.75798 1.55057 1.93678 1.56477 1.67869 1.73812 1.31079 1.12078 1.24062 1.01169 1.21825 0.79001 1.00385 1.00439 1.22457 1.01961 0.99388 0.95373 1.20225 0.89700 0.90640 0.92711 0.93042 1.42473 1.19002 1.64098 1.10510 1.19204 0.93515 1.27248 0.97102 0.91254 1.24697 0.98525 1.01369 0.96008 1.69642 1.38027 1.48075 1.02242 0.86244 0.84360 0.78780 0.77089 1.21805 1.21871 1.20837 0.93109 0.92821 0.93359 0.91968 0.90466 0.90529 0.89446 0.84487 0.83426 0.82268 0.82865 0.82666 0.90854 0.89477 0.90561 0.93177 0.78111 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.16 0.36 -1.61 16 2 C -0.11 -1.66 5.19 -26.73 -0.14 -1.80 16 3 C -0.10 -1.54 2.14 -90.51 -0.19 -1.73 16 4 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 5 C 0.12 1.81 5.03 -3.71 -0.02 1.80 16 6 N -0.59 -8.43 2.98 -173.03 -0.52 -8.94 16 7 C 0.53 7.24 7.13 -10.98 -0.08 7.17 16 8 O -0.54 -8.91 15.12 5.56 0.08 -8.82 16 9 C -0.17 -1.56 2.22 -88.37 -0.20 -1.75 16 10 C -0.54 -4.13 8.20 38.70 0.32 -3.81 16 11 S 2.38 18.69 6.80 -107.50 -0.73 17.96 16 12 O -0.93 -10.65 18.18 -57.47 -1.04 -11.70 16 13 O -0.92 -9.94 18.18 -57.47 -1.04 -10.98 16 14 C -0.56 -3.96 7.21 39.02 0.28 -3.68 16 15 C 0.11 1.46 5.74 -3.93 -0.02 1.43 16 16 C -0.15 -2.19 5.76 -26.84 -0.15 -2.34 16 17 C 0.18 3.04 2.53 -67.89 -0.17 2.87 16 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 19 N -0.72 -15.51 3.73 -53.39 -0.20 -15.71 16 20 C -0.24 -5.97 9.93 -15.06 -0.15 -6.12 16 21 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.20 13.06 55.49 0.72 -25.48 16 24 Si 0.90 21.16 29.55 -169.99 -5.02 16.13 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 33 H 0.08 1.35 6.64 -51.93 -0.34 1.00 16 34 H 0.09 1.36 5.72 -51.93 -0.30 1.07 16 35 H 0.14 1.05 7.82 -51.93 -0.41 0.64 16 36 H 0.15 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.16 1.34 7.40 -51.93 -0.38 0.95 16 38 H 0.15 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.16 0.82 7.12 -51.93 -0.37 0.45 16 40 H 0.07 0.76 4.29 -51.93 -0.22 0.54 16 41 H 0.09 1.47 7.74 -51.93 -0.40 1.07 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.38 8.95 5.94 -40.82 -0.24 8.71 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -34.20 361.55 -9.32 -43.52 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.76 Total: 8.51 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -0.26 Total: -9.94 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.01 Total: -50.14 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -2.01 Total: -31.50 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 18.69 SS G_CDS: -0.73 Total: 17.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.20 -9.32 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037860434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.164 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds