Wall clock time and date at job start Tue Mar 31 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46930 * 2 1 4 4 H 1.09002 * 109.52537 * 304.91923 * 3 2 1 5 5 C 1.53195 * 109.49760 * 64.99882 * 3 2 1 6 6 N 1.46919 * 108.89273 * 174.65835 * 5 3 2 7 7 C 1.34780 * 120.63395 * 126.29715 * 6 5 3 8 8 O 1.21284 * 119.99750 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00162 * 180.02562 * 7 6 5 10 10 C 1.53047 * 113.14929 * 280.37242 * 9 7 6 11 11 S 1.81426 * 89.88916 * 211.85368 * 10 9 7 12 12 O 1.42097 * 112.75857 * 280.47730 * 11 10 9 13 13 O 1.42108 * 112.75245 * 136.73041 * 11 10 9 14 14 C 1.53045 * 113.15061 * 180.02562 * 9 7 6 15 15 C 1.46933 * 118.74003 * 306.32349 * 6 5 3 16 16 C 1.53188 * 108.77495 * 53.60503 * 15 6 5 17 17 C 1.53034 * 109.31404 * 305.36890 * 16 15 6 18 18 H 1.09001 * 109.45754 * 301.35734 * 17 16 15 19 19 N 1.46500 * 109.45778 * 181.38788 * 17 16 15 20 20 C 1.36935 * 120.00267 * 85.00349 * 19 17 16 21 21 H 1.08005 * 119.99887 * 359.97438 * 20 19 17 22 22 C 1.38809 * 120.00449 * 179.97438 * 20 19 17 23 23 N 1.31628 * 119.99610 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00286 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47207 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47003 * 120.00094 * 24 22 20 27 27 H 1.48499 * 109.46955 * 239.99745 * 24 22 20 28 28 H 1.09003 * 109.47189 * 60.00398 * 1 2 3 29 29 H 1.08997 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47376 * 300.00117 * 1 2 3 31 31 H 1.08999 * 109.47376 * 239.99882 * 2 1 3 32 32 H 1.09003 * 109.47189 * 119.99602 * 2 1 3 33 33 H 1.09002 * 109.58720 * 54.79865 * 5 3 2 34 34 H 1.08996 * 109.58651 * 294.51761 * 5 3 2 35 35 H 1.08997 * 112.49860 * 50.21447 * 9 7 6 36 36 H 1.08996 * 113.15210 * 327.11262 * 10 9 7 37 37 H 1.09001 * 113.14451 * 96.59803 * 10 9 7 38 38 H 1.09002 * 113.14744 * 263.40266 * 14 9 7 39 39 H 1.08998 * 113.14756 * 32.84609 * 14 9 7 40 40 H 1.08994 * 109.58580 * 173.39910 * 15 6 5 41 41 H 1.09006 * 109.57831 * 293.67403 * 15 6 5 42 42 H 1.08994 * 109.49494 * 65.32533 * 16 15 6 43 43 H 1.09007 * 109.49349 * 185.38405 * 16 15 6 44 44 H 0.96996 * 119.99751 * 264.99335 * 19 17 16 45 45 H 0.96997 * 119.99435 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9820 -0.8424 5 6 1.6349 2.1280 1.3088 6 7 2.2387 3.4668 1.3513 7 6 1.4762 4.5575 1.5646 8 8 0.2798 4.4393 1.7242 9 6 2.1103 5.9240 1.6048 10 6 2.7854 6.2349 2.9426 11 16 2.3787 7.9908 2.7359 12 8 3.2704 8.6618 1.8562 13 8 1.8952 8.5875 3.9316 14 6 1.1025 7.0478 1.8570 15 6 3.6894 3.5941 1.1561 16 6 4.0744 2.8940 -0.1509 17 6 3.5687 1.4500 -0.1196 18 1 4.0018 0.9321 0.7362 19 7 3.9640 0.7676 -1.3543 20 6 5.2031 0.1931 -1.4524 21 1 5.8892 0.2433 -0.6198 22 6 5.5775 -0.4539 -2.6221 23 7 4.7412 -0.5156 -3.6367 24 14 7.2681 -1.2371 -2.7562 25 1 8.0114 -1.0306 -1.4874 26 1 7.1205 -2.6926 -3.0116 27 1 8.0160 -0.6114 -3.8762 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.9906 1.5398 2.1547 34 1 0.5494 2.2151 1.3550 35 1 2.7543 6.1104 0.7454 36 1 2.2822 5.7758 3.7935 37 1 3.8579 6.0400 2.9369 38 1 0.7648 7.5340 0.9417 39 1 0.2747 6.7451 2.4982 40 1 3.9592 4.6486 1.0992 41 1 4.2126 3.1276 1.9910 42 1 3.6224 3.4197 -0.9919 43 1 5.1590 2.8980 -0.2598 44 1 3.3480 0.7227 -2.1021 45 1 5.0027 -0.9680 -4.4538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037860437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:30 Heat of formation + Delta-G solvation = -73.644231 kcal Electronic energy + Delta-G solvation = -27231.726418 eV Core-core repulsion = 23377.572050 eV Total energy + Delta-G solvation = -3854.154368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56652 -38.23599 -37.70993 -36.52235 -36.01904 -34.82107 -33.82168 -31.79761 -29.60476 -28.95705 -27.07006 -25.88026 -24.15207 -23.64150 -22.53025 -20.89987 -19.85997 -19.21599 -19.12354 -17.81764 -17.14210 -16.90474 -16.69144 -16.26510 -15.61813 -15.56808 -14.94632 -14.45582 -14.18178 -14.05354 -13.76608 -13.64038 -13.40006 -13.24858 -13.11627 -12.73214 -12.64687 -12.62364 -12.36954 -12.19274 -11.95355 -11.82758 -11.66939 -11.42768 -11.30745 -10.99860 -10.91253 -10.78837 -10.76028 -10.42677 -10.26070 -10.19074 -9.88138 -9.75307 -9.66477 -8.96986 -8.60560 -7.03011 -5.83587 -3.12651 -0.28556 1.52762 2.42328 2.87363 3.25450 3.37860 3.43621 3.46034 3.64120 3.73761 4.13855 4.45320 4.49302 4.52329 4.74353 4.93735 4.95906 5.13192 5.15699 5.25356 5.30536 5.38067 5.48364 5.50087 5.54242 5.60270 5.60884 5.81017 5.92994 6.04429 6.07657 6.23376 6.27449 6.31748 6.38586 6.46753 6.59406 6.74664 6.88247 6.97307 7.35299 7.63185 8.04321 8.34462 9.46197 10.02958 10.37677 11.38782 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.003035 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.824126 B = 9223.240342 C =10506.178218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.118 3.882 6 N -0.599 5.599 7 C 0.539 3.461 8 O -0.540 6.540 9 C -0.097 4.097 10 C -0.593 4.593 11 S 2.416 3.584 12 O -0.909 6.909 13 O -0.923 6.923 14 C -0.578 4.578 15 C 0.103 3.897 16 C -0.154 4.154 17 C 0.183 3.817 18 H 0.048 0.952 19 N -0.720 5.720 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.154 0.846 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 13.191 13.334 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.088 0.912 5 C -0.005 4.005 6 N -0.331 5.331 7 C 0.324 3.676 8 O -0.417 6.417 9 C -0.120 4.120 10 C -0.721 4.721 11 S 2.597 3.403 12 O -0.907 6.907 13 O -0.920 6.920 14 C -0.707 4.707 15 C -0.020 4.020 16 C -0.195 4.195 17 C 0.073 3.927 18 H 0.066 0.934 19 N -0.360 5.360 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.172 0.828 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.230 14.154 13.725 20.677 hybrid contribution 0.616 -1.642 -0.893 1.968 sum -5.614 12.512 12.832 18.781 Atomic orbital electron populations 1.21844 0.96775 1.01100 1.01287 1.21441 0.94385 0.95614 1.03513 1.21842 0.97673 0.96319 0.96625 0.91168 1.21798 0.99494 0.81150 0.98012 1.48115 1.08591 1.06696 1.69713 1.19611 0.86541 0.84872 0.76557 1.90685 1.14569 1.86137 1.50344 1.21588 0.97081 0.95030 0.98279 1.30999 1.10378 1.27090 1.03658 1.08268 0.78889 0.76867 0.76284 1.93741 1.60702 1.71196 1.65017 1.93655 1.78550 1.75742 1.44016 1.30867 1.15215 1.09038 1.15592 1.21960 0.79252 1.01221 0.99544 1.22713 1.02389 0.99388 0.95004 1.20239 0.90672 0.90490 0.91310 0.93400 1.42412 1.16499 1.64521 1.12604 1.19245 0.91751 1.27465 0.98588 0.91186 1.24734 0.98158 1.01482 0.96417 1.69671 1.35237 1.48299 1.04679 0.86158 0.83984 0.78897 0.77360 1.20592 1.21912 1.21909 0.92982 0.93115 0.93244 0.89752 0.92434 0.91523 0.89063 0.84542 0.83340 0.84769 0.85184 0.82764 0.90462 0.91148 0.92051 0.90355 0.78183 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.11 -1.72 5.32 -26.73 -0.14 -1.86 16 3 C -0.10 -1.61 1.94 -90.34 -0.18 -1.78 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 5 C 0.12 1.58 5.32 -3.71 -0.02 1.56 16 6 N -0.60 -7.45 2.97 -172.77 -0.51 -7.97 16 7 C 0.54 6.67 7.20 -10.98 -0.08 6.59 16 8 O -0.54 -8.35 15.36 5.55 0.09 -8.26 16 9 C -0.10 -0.80 2.47 -91.73 -0.23 -1.03 16 10 C -0.59 -3.38 7.15 37.18 0.27 -3.12 16 11 S 2.42 14.94 7.55 -107.50 -0.81 14.12 16 12 O -0.91 -8.39 18.18 -57.30 -1.04 -9.43 16 13 O -0.92 -8.79 18.18 -57.30 -1.04 -9.83 16 14 C -0.58 -3.93 7.18 37.18 0.27 -3.67 16 15 C 0.10 1.17 6.26 -3.71 -0.02 1.14 16 16 C -0.15 -2.34 5.66 -26.62 -0.15 -2.49 16 17 C 0.18 3.23 2.20 -67.73 -0.15 3.08 16 18 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 19 N -0.72 -16.50 4.35 -53.23 -0.23 -16.73 16 20 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 21 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 24 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.60 6.69 -51.93 -0.35 0.25 16 31 H 0.08 1.57 7.25 -51.93 -0.38 1.20 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.28 5.71 -51.93 -0.30 0.99 16 35 H 0.14 0.93 7.27 -51.93 -0.38 0.55 16 36 H 0.15 0.79 8.11 -51.93 -0.42 0.37 16 37 H 0.13 0.50 7.92 -51.93 -0.41 0.09 16 38 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.15 1.13 7.57 -51.93 -0.39 0.74 16 40 H 0.08 0.66 5.43 -51.93 -0.28 0.38 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 44 H 0.38 9.59 7.53 -40.82 -0.31 9.28 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -35.42 367.31 -9.62 -45.05 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.98 Total: 7.27 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -0.32 Total: -9.99 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.02 Total: -50.97 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -2.00 Total: -27.53 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 14.94 SS G_CDS: -0.81 Total: 14.12 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.42 -9.62 -45.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037860437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.599 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds