Wall clock time and date at job start Tue Mar 31 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46930 * 2 1 4 4 H 1.09002 * 109.52537 * 304.91923 * 3 2 1 5 5 C 1.53195 * 109.49760 * 64.99882 * 3 2 1 6 6 N 1.46919 * 108.89273 * 174.65835 * 5 3 2 7 7 C 1.34780 * 120.63395 * 126.29715 * 6 5 3 8 8 O 1.21284 * 119.99750 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00162 * 180.02562 * 7 6 5 10 10 C 1.53047 * 113.14929 * 280.37242 * 9 7 6 11 11 S 1.81426 * 89.88916 * 211.85368 * 10 9 7 12 12 O 1.42097 * 112.75857 * 280.47730 * 11 10 9 13 13 O 1.42108 * 112.75245 * 136.73041 * 11 10 9 14 14 C 1.53045 * 113.15061 * 180.02562 * 9 7 6 15 15 C 1.46933 * 118.74003 * 306.32349 * 6 5 3 16 16 C 1.53188 * 108.77495 * 53.60503 * 15 6 5 17 17 C 1.53034 * 109.31404 * 305.36890 * 16 15 6 18 18 H 1.09001 * 109.45754 * 301.35734 * 17 16 15 19 19 N 1.46500 * 109.45778 * 181.38788 * 17 16 15 20 20 C 1.36935 * 120.00267 * 85.00349 * 19 17 16 21 21 H 1.08005 * 119.99887 * 359.97438 * 20 19 17 22 22 C 1.38809 * 120.00449 * 179.97438 * 20 19 17 23 23 N 1.31628 * 119.99610 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00286 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47207 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47003 * 120.00094 * 24 22 20 27 27 H 1.48499 * 109.46955 * 239.99745 * 24 22 20 28 28 H 1.09003 * 109.47189 * 60.00398 * 1 2 3 29 29 H 1.08997 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47376 * 300.00117 * 1 2 3 31 31 H 1.08999 * 109.47376 * 239.99882 * 2 1 3 32 32 H 1.09003 * 109.47189 * 119.99602 * 2 1 3 33 33 H 1.09002 * 109.58720 * 54.79865 * 5 3 2 34 34 H 1.08996 * 109.58651 * 294.51761 * 5 3 2 35 35 H 1.08997 * 112.49860 * 50.21447 * 9 7 6 36 36 H 1.08996 * 113.15210 * 327.11262 * 10 9 7 37 37 H 1.09001 * 113.14451 * 96.59803 * 10 9 7 38 38 H 1.09002 * 113.14744 * 263.40266 * 14 9 7 39 39 H 1.08998 * 113.14756 * 32.84609 * 14 9 7 40 40 H 1.08994 * 109.58580 * 173.39910 * 15 6 5 41 41 H 1.09006 * 109.57831 * 293.67403 * 15 6 5 42 42 H 1.08994 * 109.49494 * 65.32533 * 16 15 6 43 43 H 1.09007 * 109.49349 * 185.38405 * 16 15 6 44 44 H 0.96996 * 119.99751 * 264.99335 * 19 17 16 45 45 H 0.96997 * 119.99435 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9820 -0.8424 5 6 1.6349 2.1280 1.3088 6 7 2.2387 3.4668 1.3513 7 6 1.4762 4.5575 1.5646 8 8 0.2798 4.4393 1.7242 9 6 2.1103 5.9240 1.6048 10 6 2.7854 6.2349 2.9426 11 16 2.3787 7.9908 2.7359 12 8 3.2704 8.6618 1.8562 13 8 1.8952 8.5875 3.9316 14 6 1.1025 7.0478 1.8570 15 6 3.6894 3.5941 1.1561 16 6 4.0744 2.8940 -0.1509 17 6 3.5687 1.4500 -0.1196 18 1 4.0018 0.9321 0.7362 19 7 3.9640 0.7676 -1.3543 20 6 5.2031 0.1931 -1.4524 21 1 5.8892 0.2433 -0.6198 22 6 5.5775 -0.4539 -2.6221 23 7 4.7412 -0.5156 -3.6367 24 14 7.2681 -1.2371 -2.7562 25 1 8.0114 -1.0306 -1.4874 26 1 7.1205 -2.6926 -3.0116 27 1 8.0160 -0.6114 -3.8762 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.9906 1.5398 2.1547 34 1 0.5494 2.2151 1.3550 35 1 2.7543 6.1104 0.7454 36 1 2.2822 5.7758 3.7935 37 1 3.8579 6.0400 2.9369 38 1 0.7648 7.5340 0.9417 39 1 0.2747 6.7451 2.4982 40 1 3.9592 4.6486 1.0992 41 1 4.2126 3.1276 1.9910 42 1 3.6224 3.4197 -0.9919 43 1 5.1590 2.8980 -0.2598 44 1 3.3480 0.7227 -2.1021 45 1 5.0027 -0.9680 -4.4538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037860437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:28 Heat of formation + Delta-G solvation = -100.010810 kcal Electronic energy + Delta-G solvation = -27232.869759 eV Core-core repulsion = 23377.572050 eV Total energy + Delta-G solvation = -3855.297709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -41.54491 -39.39180 -38.36741 -37.18728 -36.74070 -36.18916 -35.25276 -33.44224 -31.06267 -30.20377 -27.58030 -27.12760 -25.56921 -24.79581 -23.76025 -22.18512 -21.10833 -20.07007 -19.75965 -19.07494 -18.62822 -17.59505 -17.28319 -17.03115 -16.81971 -16.39892 -16.36310 -15.62256 -15.52879 -15.16767 -15.07418 -14.74248 -14.59172 -14.42429 -14.06529 -13.82256 -13.61541 -13.31268 -13.28408 -13.14380 -13.08762 -12.87754 -12.74900 -12.67273 -12.56932 -12.48558 -12.14869 -12.06269 -11.93563 -11.82978 -11.57975 -11.52065 -11.31026 -11.07764 -10.92209 -10.71195 -9.67386 -8.94644 -7.90283 -5.17468 -0.82321 1.01302 1.49007 1.49809 1.53844 1.58882 1.95631 2.58707 2.74036 3.06255 3.15042 3.43114 3.46617 3.68765 3.78674 3.89404 3.96179 4.02465 4.09682 4.27176 4.30811 4.35975 4.43510 4.47290 4.52671 4.64559 4.74765 4.81130 4.83855 4.85597 4.93350 4.97478 5.01570 5.07126 5.17052 5.29430 5.38549 5.47331 5.53173 5.59485 5.67059 6.31296 6.39244 7.08929 7.38063 8.14737 8.37108 9.33461 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.003035 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.824126 B = 9223.240342 C =10506.178218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.093 4.093 4 H 0.051 0.949 5 C 0.124 3.876 6 N -0.602 5.602 7 C 0.536 3.464 8 O -0.575 6.575 9 C -0.107 4.107 10 C -0.580 4.580 11 S 2.460 3.540 12 O -0.936 6.936 13 O -0.955 6.955 14 C -0.582 4.582 15 C 0.109 3.891 16 C -0.146 4.146 17 C 0.177 3.823 18 H 0.048 0.952 19 N -0.732 5.732 20 C -0.227 4.227 21 H 0.079 0.921 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.965 3.035 25 H -0.263 1.263 26 H -0.300 1.300 27 H -0.298 1.298 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.069 0.931 44 H 0.370 0.630 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 14.312 15.571 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.113 4.113 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.333 5.333 7 C 0.323 3.677 8 O -0.455 6.455 9 C -0.130 4.130 10 C -0.709 4.709 11 S 2.643 3.357 12 O -0.933 6.933 13 O -0.952 6.952 14 C -0.710 4.710 15 C -0.014 4.014 16 C -0.187 4.187 17 C 0.069 3.931 18 H 0.066 0.934 19 N -0.371 5.371 20 C -0.359 4.359 21 H 0.097 0.903 22 C -0.269 4.269 23 N -0.623 5.623 24 Si 0.796 3.204 25 H -0.187 1.187 26 H -0.227 1.227 27 H -0.226 1.226 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.174 0.826 36 H 0.175 0.825 37 H 0.181 0.819 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.201 0.799 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.363 15.326 16.023 22.812 hybrid contribution 0.277 -1.999 -1.547 2.543 sum -5.086 13.326 14.476 20.323 Atomic orbital electron populations 1.21776 0.94968 1.01865 1.01672 1.21348 0.95972 0.95350 1.01882 1.21686 0.95896 0.96342 0.97395 0.93075 1.21644 0.99382 0.82001 0.96865 1.48181 1.09113 1.06382 1.69634 1.20237 0.86141 0.85962 0.75374 1.90673 1.16212 1.86790 1.51800 1.21767 0.98067 0.92692 1.00492 1.30953 1.12234 1.25319 1.02412 1.06930 0.77627 0.76452 0.74721 1.93703 1.61484 1.72444 1.65701 1.93611 1.79184 1.76932 1.45471 1.30924 1.15241 1.08585 1.16293 1.22033 0.78564 1.03137 0.97625 1.22507 1.01520 0.97585 0.97119 1.20503 0.92200 0.91511 0.88899 0.93385 1.42606 1.15453 1.65118 1.13893 1.19629 0.92529 1.25492 0.98204 0.90324 1.25465 1.01471 1.03331 0.96639 1.69828 1.37056 1.50231 1.05136 0.85177 0.80390 0.77269 0.77576 1.18742 1.22740 1.22594 0.93698 0.92206 0.91682 0.93620 0.91683 0.89964 0.89557 0.82640 0.82486 0.81866 0.84055 0.83298 0.86894 0.89068 0.93475 0.91230 0.79867 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.67 71.98 0.70 -3.09 16 2 C -0.11 -3.33 5.32 30.59 0.16 -3.16 16 3 C -0.09 -2.83 1.94 -10.61 -0.02 -2.85 16 4 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 5 C 0.12 3.09 5.32 86.36 0.46 3.55 16 6 N -0.60 -13.34 2.97 -818.90 -2.44 -15.77 16 7 C 0.54 11.89 7.20 87.66 0.63 12.53 16 8 O -0.57 -16.90 15.36 -3.04 -0.05 -16.94 16 9 C -0.11 -1.43 2.47 -11.51 -0.03 -1.46 16 10 C -0.58 -4.30 7.15 72.00 0.51 -3.79 16 11 S 2.46 24.38 7.55 -56.49 -0.43 23.95 16 12 O -0.94 -15.01 18.18 -127.88 -2.32 -17.33 16 13 O -0.95 -16.52 18.18 -127.88 -2.32 -18.84 16 14 C -0.58 -6.60 7.18 72.00 0.52 -6.09 16 15 C 0.11 2.06 6.26 86.36 0.54 2.60 16 16 C -0.15 -4.21 5.66 30.67 0.17 -4.04 16 17 C 0.18 6.14 2.20 45.12 0.10 6.24 16 18 H 0.05 1.67 8.08 -2.39 -0.02 1.66 16 19 N -0.73 -34.08 4.35 -322.33 -1.40 -35.48 16 20 C -0.23 -11.72 9.93 84.03 0.83 -10.89 16 21 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 22 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 23 N -0.97 -58.07 13.06 21.65 0.28 -57.78 16 24 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.49 6.69 -2.39 -0.02 1.48 16 31 H 0.04 1.77 7.25 -2.39 -0.02 1.75 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.30 5.71 -2.39 -0.01 2.28 16 35 H 0.16 1.49 7.27 -2.39 -0.02 1.48 16 36 H 0.16 1.05 8.11 -2.39 -0.02 1.03 16 37 H 0.16 0.32 7.92 -2.39 -0.02 0.30 16 38 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.15 1.95 7.57 -2.39 -0.02 1.93 16 40 H 0.11 1.38 5.43 -2.39 -0.01 1.37 16 41 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 44 H 0.37 19.20 7.53 -92.71 -0.70 18.50 16 45 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -78.08 367.31 -1.30 -79.38 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.30 Total: 26.37 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 5.05 Total: -14.25 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -3.55 Total: -109.04 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -4.70 Total: -53.12 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 24.38 SS G_CDS: -0.43 Total: 23.95 kcal Total: -78.08 -1.30 -79.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037860437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.631 kcal (2) G-P(sol) polarization free energy of solvation -78.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds