Wall clock time and date at job start Tue Mar 31 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47082 * 2 1 4 4 H 1.08996 * 109.49926 * 55.06658 * 3 2 1 5 5 C 1.53193 * 109.49603 * 294.99954 * 3 2 1 6 6 N 1.46929 * 108.77286 * 185.38005 * 5 3 2 7 7 C 1.34771 * 120.62975 * 233.58358 * 6 5 3 8 8 O 1.21278 * 120.00181 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99809 * 180.02562 * 7 6 5 10 10 C 1.55881 * 110.82184 * 180.02562 * 9 7 6 11 11 S 1.83082 * 82.43940 * 217.26188 * 10 9 7 12 12 O 1.42105 * 111.36329 * 130.46465 * 11 10 9 13 13 O 1.42094 * 111.36046 * 269.41323 * 11 10 9 14 14 C 1.56453 * 110.95001 * 66.21887 * 9 7 6 15 15 C 1.46930 * 118.73527 * 53.86208 * 6 5 3 16 16 C 1.53617 * 108.54500 * 306.08905 * 15 6 5 17 17 C 1.53040 * 109.52389 * 175.14652 * 3 2 1 18 18 H 1.09004 * 109.45849 * 301.35450 * 17 3 2 19 19 N 1.46499 * 109.46155 * 61.30940 * 17 3 2 20 20 C 1.36938 * 119.99847 * 204.99829 * 19 17 3 21 21 H 1.07990 * 120.00610 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99410 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00708 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99681 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47160 * 89.99823 * 24 22 20 26 26 H 1.48497 * 109.47218 * 209.99973 * 24 22 20 27 27 H 1.48503 * 109.47293 * 329.99874 * 24 22 20 28 28 H 1.09005 * 109.47293 * 300.00005 * 1 2 3 29 29 H 1.08999 * 109.47552 * 59.99817 * 1 2 3 30 30 H 1.09007 * 109.47548 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47293 * 239.99995 * 2 1 3 32 32 H 1.08998 * 109.47119 * 119.99878 * 2 1 3 33 33 H 1.08999 * 109.58631 * 65.59361 * 5 3 2 34 34 H 1.08997 * 109.58686 * 305.16668 * 5 3 2 35 35 H 1.09000 * 110.40129 * 303.17360 * 9 7 6 36 36 H 1.08999 * 114.38588 * 103.86909 * 10 9 7 37 37 H 1.09007 * 114.41633 * 330.65251 * 10 9 7 38 38 H 1.08996 * 114.37890 * 29.32933 * 14 9 7 39 39 H 1.08994 * 114.49891 * 255.98685 * 14 9 7 40 40 H 1.08994 * 109.58681 * 65.92894 * 15 6 5 41 41 H 1.09004 * 109.58178 * 186.35391 * 15 6 5 42 42 H 1.09001 * 109.63738 * 294.87060 * 16 15 6 43 43 H 1.08998 * 109.43180 * 174.72740 * 16 15 6 44 44 H 0.96999 * 120.00057 * 25.00299 * 19 17 3 45 45 H 0.96999 * 120.00741 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6350 2.1280 -1.3088 6 7 2.2408 3.4660 -1.3490 7 6 1.4804 4.5578 -1.5634 8 8 0.2841 4.4415 -1.7251 9 6 2.1168 5.9234 -1.6024 10 6 1.0463 7.0264 -1.8621 11 16 2.3975 7.7639 -2.8532 12 8 1.9478 8.1290 -4.1508 13 8 3.1931 8.6432 -2.0703 14 6 3.0707 6.0610 -2.8348 15 6 3.6922 3.5903 -1.1570 16 6 4.0733 2.8890 0.1555 17 6 3.5654 1.4457 0.1220 18 1 3.8573 0.9366 1.0407 19 7 4.1485 0.7496 -1.0276 20 6 5.3869 0.1745 -0.9238 21 1 5.9336 0.2335 0.0056 22 6 5.9395 -0.4846 -2.0134 23 7 5.2731 -0.5571 -3.1461 24 14 7.6285 -1.2698 -1.8716 25 1 7.4844 -2.6741 -1.4106 26 1 8.2964 -1.2503 -3.1978 27 1 8.4475 -0.5094 -0.8937 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 0.5495 2.2168 -1.3541 34 1 1.9912 1.5400 -2.1546 35 1 2.6560 6.1179 -0.6753 36 1 0.7702 7.6023 -0.9788 37 1 0.1891 6.6934 -2.4474 38 1 2.7853 5.4550 -3.6946 39 1 4.1320 5.9992 -2.5941 40 1 4.2127 3.1192 -1.9908 41 1 3.9645 4.6443 -1.1022 42 1 3.6206 3.4145 0.9964 43 1 5.1576 2.8907 0.2660 44 1 3.6574 0.6963 -1.8624 45 1 5.6594 -1.0173 -3.9076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037860441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:36 Heat of formation + Delta-G solvation = -70.572664 kcal Electronic energy + Delta-G solvation = -27792.651857 eV Core-core repulsion = 23938.630682 eV Total energy + Delta-G solvation = -3854.021175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.45721 -38.19569 -37.44907 -36.30084 -35.47777 -34.46422 -33.80121 -31.78444 -29.54013 -28.73682 -27.71406 -25.82070 -23.98273 -23.64762 -22.95170 -20.87899 -19.51651 -19.04232 -18.49429 -17.68677 -17.31700 -16.86522 -16.72345 -16.08270 -15.49520 -15.29896 -14.77919 -14.36307 -14.11159 -14.01305 -13.77968 -13.72349 -13.37452 -13.18659 -13.13790 -12.61360 -12.50863 -12.43918 -12.36922 -12.28226 -12.11614 -11.80824 -11.48999 -11.19845 -11.04646 -10.91638 -10.85053 -10.83107 -10.66713 -10.39246 -10.34807 -10.23631 -9.87774 -9.68165 -9.62897 -9.00499 -8.38111 -7.06153 -5.86750 -3.15596 -0.29786 1.93702 2.47941 2.96501 3.21820 3.36258 3.42233 3.43799 3.60955 3.72950 3.81969 4.43834 4.50672 4.63847 4.78565 5.02227 5.11413 5.16963 5.24087 5.33397 5.41549 5.44141 5.48203 5.51274 5.61503 5.69656 5.72028 5.82637 5.98840 6.06312 6.08056 6.24911 6.28287 6.32990 6.47448 6.51451 6.61175 6.67049 6.84051 6.90406 7.52250 7.61538 8.15195 8.31591 9.43600 9.99273 10.34340 11.35497 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.003803 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.480259 B = 7361.055986 C = 8787.293050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.117 3.883 6 N -0.594 5.594 7 C 0.534 3.466 8 O -0.543 6.543 9 C -0.168 4.168 10 C -0.536 4.536 11 S 2.377 3.623 12 O -0.933 6.933 13 O -0.923 6.923 14 C -0.555 4.555 15 C 0.109 3.891 16 C -0.152 4.152 17 C 0.178 3.822 18 H 0.051 0.949 19 N -0.718 5.718 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.009 4.009 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.391 12.441 4.716 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.005 4.005 6 N -0.324 5.324 7 C 0.320 3.680 8 O -0.421 6.421 9 C -0.192 4.192 10 C -0.666 4.666 11 S 2.560 3.440 12 O -0.930 6.930 13 O -0.920 6.920 14 C -0.684 4.684 15 C -0.014 4.014 16 C -0.193 4.193 17 C 0.067 3.933 18 H 0.069 0.931 19 N -0.361 5.361 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.206 4.206 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.177 0.823 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.548 13.320 4.237 15.885 hybrid contribution 0.834 -1.590 0.387 1.837 sum -6.714 11.730 4.624 14.285 Atomic orbital electron populations 1.21855 0.96782 1.01108 1.01321 1.21417 0.94295 0.95659 1.03442 1.21751 0.97416 0.96212 0.96908 0.91579 1.21759 0.98835 0.81311 0.98568 1.48072 1.08775 1.06473 1.69126 1.19547 0.86579 0.84837 0.77065 1.90677 1.14555 1.86111 1.50797 1.23457 0.96177 0.97690 1.01870 1.30802 1.12459 1.06845 1.16507 1.10332 0.79626 0.77803 0.76204 1.93599 1.79661 1.82236 1.37490 1.93671 1.66515 1.60828 1.70946 1.31086 1.08497 1.25207 1.03567 1.21978 0.78932 1.00126 1.00337 1.22629 1.01972 0.99393 0.95290 1.20223 0.89701 0.90627 0.92712 0.93056 1.42471 1.19023 1.64070 1.10518 1.19206 0.93532 1.27248 0.97082 0.91258 1.24693 0.98537 1.01350 0.95992 1.69637 1.38117 1.48000 1.02254 0.86250 0.84174 0.79397 0.76678 1.21795 1.21870 1.20839 0.93392 0.92803 0.93103 0.90448 0.91975 0.89443 0.90488 0.84608 0.83508 0.82255 0.82713 0.82690 0.89223 0.91082 0.93241 0.90583 0.78101 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.15 0.36 -1.61 16 2 C -0.11 -1.66 5.19 -26.73 -0.14 -1.80 16 3 C -0.10 -1.55 2.14 -90.50 -0.19 -1.75 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 5 C 0.12 1.82 5.02 -3.71 -0.02 1.80 16 6 N -0.59 -8.43 2.97 -172.50 -0.51 -8.95 16 7 C 0.53 7.24 7.13 -10.98 -0.08 7.17 16 8 O -0.54 -8.91 15.12 5.56 0.08 -8.83 16 9 C -0.17 -1.56 2.21 -88.37 -0.20 -1.75 16 10 C -0.54 -4.16 8.20 38.70 0.32 -3.84 16 11 S 2.38 19.55 6.80 -107.50 -0.73 18.82 16 12 O -0.93 -11.18 18.18 -57.47 -1.04 -12.23 16 13 O -0.92 -10.06 18.18 -57.47 -1.04 -11.11 16 14 C -0.55 -4.38 7.26 39.02 0.28 -4.09 16 15 C 0.11 1.50 5.58 -3.49 -0.02 1.48 16 16 C -0.15 -2.25 5.79 -26.39 -0.15 -2.41 16 17 C 0.18 3.06 2.53 -67.89 -0.17 2.89 16 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 19 N -0.72 -15.49 3.72 -53.39 -0.20 -15.69 16 20 C -0.24 -5.96 9.93 -15.06 -0.15 -6.11 16 21 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.12 13.06 55.49 0.72 -25.40 16 24 Si 0.90 21.12 29.55 -169.99 -5.02 16.10 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 30 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.37 5.72 -51.93 -0.30 1.07 16 34 H 0.08 1.34 6.64 -51.93 -0.34 1.00 16 35 H 0.14 0.98 7.57 -51.93 -0.39 0.59 16 36 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.16 1.36 7.40 -51.92 -0.38 0.98 16 38 H 0.15 1.25 8.10 -51.93 -0.42 0.83 16 39 H 0.15 0.94 7.41 -51.93 -0.38 0.56 16 40 H 0.09 1.48 7.73 -51.93 -0.40 1.08 16 41 H 0.07 0.74 4.74 -51.93 -0.25 0.50 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.38 8.91 5.94 -40.82 -0.24 8.67 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -34.10 361.91 -9.33 -43.43 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.79 Total: 8.77 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.25 Total: -10.38 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.01 Total: -50.04 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -2.01 Total: -32.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 19.55 SS G_CDS: -0.73 Total: 18.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.10 -9.33 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037860441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.139 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds