Wall clock time and date at job start Tue Mar 31 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46856 * 2 1 4 4 H 1.09001 * 109.52184 * 54.91751 * 3 2 1 5 5 C 1.53190 * 109.49799 * 294.84110 * 3 2 1 6 6 N 1.46926 * 108.77858 * 185.41367 * 5 3 2 7 7 C 1.34770 * 120.63345 * 233.59224 * 6 5 3 8 8 O 1.21289 * 119.99977 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00234 * 179.97438 * 7 6 5 10 10 C 1.53045 * 113.14988 * 280.36774 * 9 7 6 11 11 S 1.81429 * 89.89169 * 211.85405 * 10 9 7 12 12 O 1.42103 * 112.75050 * 280.47574 * 11 10 9 13 13 O 1.42100 * 112.75474 * 136.72464 * 11 10 9 14 14 C 1.53040 * 113.15464 * 179.97438 * 9 7 6 15 15 C 1.46929 * 118.73460 * 53.60366 * 6 5 3 16 16 C 1.53190 * 108.77931 * 306.39403 * 15 6 5 17 17 C 1.53038 * 109.49666 * 175.00229 * 3 2 1 18 18 H 1.08990 * 109.46215 * 61.31068 * 17 3 2 19 19 N 1.46502 * 109.46021 * 301.33638 * 17 3 2 20 20 C 1.36930 * 120.00159 * 155.00186 * 19 17 3 21 21 H 1.08000 * 119.99841 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00182 * 179.97438 * 20 19 17 23 23 N 1.31622 * 119.99887 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 89.99941 * 24 22 20 26 26 H 1.48503 * 109.47261 * 330.00122 * 24 22 20 27 27 H 1.48500 * 109.47454 * 210.00115 * 24 22 20 28 28 H 1.09001 * 109.47133 * 299.99750 * 1 2 3 29 29 H 1.09001 * 109.47413 * 60.00057 * 1 2 3 30 30 H 1.09001 * 109.46693 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47133 * 240.00250 * 2 1 3 32 32 H 1.08993 * 109.47277 * 119.99704 * 2 1 3 33 33 H 1.09003 * 109.58391 * 305.20090 * 5 3 2 34 34 H 1.09001 * 109.58892 * 65.62127 * 5 3 2 35 35 H 1.09003 * 112.50090 * 50.20710 * 9 7 6 36 36 H 1.09000 * 113.14537 * 327.10788 * 10 9 7 37 37 H 1.08998 * 113.15003 * 96.59553 * 10 9 7 38 38 H 1.09000 * 113.15100 * 263.40567 * 14 9 7 39 39 H 1.09000 * 113.14828 * 32.88553 * 14 9 7 40 40 H 1.08997 * 109.58662 * 66.18848 * 15 6 5 41 41 H 1.09000 * 109.58435 * 186.46544 * 15 6 5 42 42 H 1.09007 * 109.49799 * 294.68654 * 16 15 6 43 43 H 1.08997 * 109.49916 * 174.58915 * 16 15 6 44 44 H 0.97008 * 119.99482 * 335.00242 * 19 17 3 45 45 H 0.96993 * 120.00105 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 0.8407 5 6 1.6384 2.1268 -1.3104 6 7 2.2448 3.4645 -1.3507 7 6 1.4855 4.5565 -1.5680 8 8 0.2895 4.4405 -1.7331 9 6 2.1224 5.9218 -1.6059 10 6 2.4023 6.4939 -0.2143 11 16 2.1218 8.1697 -0.8506 12 8 3.2445 8.6862 -1.5521 13 8 1.3388 8.9670 0.0271 14 6 1.1179 7.0474 -1.8632 15 6 3.6950 3.5889 -1.1498 16 6 4.0735 2.8883 0.1588 17 6 3.5651 1.4452 0.1257 18 1 4.0007 0.9265 -0.7282 19 7 3.9541 0.7622 1.3620 20 6 5.1922 0.1865 1.4658 21 1 5.8821 0.2363 0.6363 22 6 5.5610 -0.4602 2.6374 23 7 4.7204 -0.5205 3.6484 24 14 7.2497 -1.2461 2.7787 25 1 8.2144 -0.2532 3.3163 26 1 7.6996 -1.6972 1.4372 27 1 7.1778 -2.4126 3.6947 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 1.9963 1.5378 -2.1548 34 1 0.5531 2.2161 -1.3585 35 1 2.9876 5.9603 -2.2678 36 1 1.6664 6.1896 0.5300 37 1 3.4267 6.3281 0.1191 38 1 1.0668 7.3450 -2.9105 39 1 0.1344 6.8498 -1.4368 40 1 4.2207 3.1192 -1.9811 41 1 3.9671 4.6429 -1.0944 42 1 3.6191 3.4149 0.9981 43 1 5.1576 2.8896 0.2719 44 1 3.3345 0.7178 2.1071 45 1 3.8434 -0.1127 3.5749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037860444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:43 Heat of formation + Delta-G solvation = -73.239470 kcal Electronic energy + Delta-G solvation = -27431.806017 eV Core-core repulsion = 23577.669201 eV Total energy + Delta-G solvation = -3854.136816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62787 -38.31960 -37.70928 -36.52280 -36.04434 -34.98717 -34.00974 -31.91970 -29.55842 -28.88167 -27.06701 -25.80168 -24.03428 -23.67689 -22.65669 -21.04338 -19.99781 -19.24300 -19.02961 -17.87561 -17.36128 -16.94513 -16.70308 -16.29963 -15.67611 -15.47662 -15.04917 -14.70732 -14.33428 -14.02227 -13.67637 -13.58940 -13.52712 -13.46464 -13.21281 -12.91527 -12.63997 -12.61662 -12.36116 -12.25228 -11.97790 -11.92122 -11.75679 -11.45486 -11.36611 -10.99943 -10.82654 -10.75651 -10.64494 -10.39966 -10.33103 -10.08658 -9.95220 -9.85370 -9.24001 -8.97263 -8.65659 -7.10928 -6.16361 -3.17217 -0.28064 1.53308 2.38278 2.82182 3.25579 3.46828 3.50895 3.63967 3.65065 3.73416 4.11359 4.43452 4.46232 4.59792 4.74414 4.86970 4.96591 5.05147 5.07368 5.17571 5.28416 5.33080 5.42417 5.47288 5.50674 5.53396 5.57759 5.73296 5.85298 5.96298 5.99074 6.08579 6.18651 6.22284 6.29377 6.37862 6.49462 6.65801 6.76377 6.88207 7.29823 7.73737 7.99356 8.68831 9.14833 10.01349 10.16424 11.31652 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.003280 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.863447 B = 8534.690608 C = 9789.908586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.600 5.600 7 C 0.539 3.461 8 O -0.539 6.539 9 C -0.095 4.095 10 C -0.594 4.594 11 S 2.416 3.584 12 O -0.911 6.911 13 O -0.921 6.921 14 C -0.578 4.578 15 C 0.103 3.897 16 C -0.152 4.152 17 C 0.189 3.811 18 H 0.049 0.951 19 N -0.731 5.731 20 C -0.332 4.332 21 H 0.064 0.936 22 C -0.043 4.043 23 N -0.943 5.943 24 Si 1.080 2.920 25 H -0.296 1.296 26 H -0.295 1.295 27 H -0.288 1.288 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.150 0.850 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.154 0.846 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.367 0.633 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 13.411 -12.486 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.332 5.332 7 C 0.324 3.676 8 O -0.417 6.417 9 C -0.119 4.119 10 C -0.721 4.721 11 S 2.597 3.403 12 O -0.908 6.908 13 O -0.918 6.918 14 C -0.707 4.707 15 C -0.020 4.020 16 C -0.193 4.193 17 C 0.078 3.922 18 H 0.067 0.933 19 N -0.373 5.373 20 C -0.463 4.463 21 H 0.082 0.918 22 C -0.241 4.241 23 N -0.588 5.588 24 Si 0.911 3.089 25 H -0.224 1.224 26 H -0.222 1.222 27 H -0.214 1.214 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.172 0.828 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.200 0.800 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.207 13.619 -11.567 18.611 hybrid contribution -1.218 -0.344 -0.945 1.580 sum -6.425 13.275 -12.512 19.341 Atomic orbital electron populations 1.21846 0.96622 1.01204 1.01354 1.21438 0.94510 0.95589 1.03378 1.21807 0.97700 0.96316 0.96763 0.91314 1.21787 0.99506 0.81231 0.97858 1.48113 1.08669 1.06660 1.69756 1.19639 0.86601 0.84839 0.76498 1.90688 1.14602 1.86137 1.50252 1.21569 0.99414 0.94512 0.96378 1.31021 1.12324 1.24246 1.04559 1.08274 0.77212 0.76456 0.78359 1.93731 1.48093 1.77689 1.71293 1.93660 1.68717 1.67330 1.62063 1.30870 1.12768 1.10742 1.16297 1.21957 0.79265 1.01316 0.99501 1.22676 1.02402 0.99228 0.94987 1.20114 0.90612 0.90470 0.90969 0.93280 1.42416 1.16498 1.65689 1.12687 1.20029 0.92391 1.32190 1.01648 0.91781 1.25722 1.05783 1.00154 0.92391 1.70855 1.08289 1.47513 1.32146 0.83225 0.74227 0.76436 0.74967 1.22361 1.22175 1.21422 0.93007 0.93109 0.93018 0.92291 0.90200 0.91433 0.88980 0.84735 0.83208 0.84626 0.85264 0.82752 0.91133 0.90328 0.92210 0.90369 0.79973 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.16 0.36 -1.65 16 2 C -0.11 -1.71 5.31 -26.73 -0.14 -1.85 16 3 C -0.11 -1.62 1.92 -90.50 -0.17 -1.79 16 4 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.12 1.59 5.33 -3.71 -0.02 1.57 16 6 N -0.60 -7.47 2.97 -172.77 -0.51 -7.99 16 7 C 0.54 6.65 7.20 -10.99 -0.08 6.57 16 8 O -0.54 -8.31 15.36 5.55 0.09 -8.23 16 9 C -0.10 -0.79 2.46 -91.73 -0.23 -1.02 16 10 C -0.59 -4.11 7.05 37.18 0.26 -3.84 16 11 S 2.42 16.14 7.55 -107.50 -0.81 15.33 16 12 O -0.91 -8.49 18.18 -57.30 -1.04 -9.53 16 13 O -0.92 -9.47 18.18 -57.30 -1.04 -10.52 16 14 C -0.58 -3.91 7.18 37.18 0.27 -3.65 16 15 C 0.10 1.17 6.28 -3.71 -0.02 1.15 16 16 C -0.15 -2.31 5.66 -26.61 -0.15 -2.46 16 17 C 0.19 3.35 2.19 -67.89 -0.15 3.20 16 18 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 19 N -0.73 -16.73 4.33 -53.39 -0.23 -16.96 16 20 C -0.33 -8.69 9.93 -15.06 -0.15 -8.84 16 21 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 22 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 23 N -0.94 -28.09 13.70 55.49 0.76 -27.33 16 24 Si 1.08 25.02 29.92 -169.99 -5.09 19.93 16 25 H -0.30 -6.69 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.61 6.70 -51.93 -0.35 0.27 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.47 7.22 -51.93 -0.37 1.10 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.29 5.73 -51.93 -0.30 0.99 16 35 H 0.13 0.80 7.53 -51.93 -0.39 0.41 16 36 H 0.15 1.08 8.11 -51.93 -0.42 0.66 16 37 H 0.14 0.74 7.56 -51.93 -0.39 0.35 16 38 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.15 1.17 7.57 -51.93 -0.39 0.78 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.68 5.09 -51.93 -0.26 0.41 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.37 8.87 6.34 -40.82 -0.26 8.61 16 45 H 0.26 7.49 6.77 -40.82 -0.28 7.21 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -36.30 365.00 -9.55 -45.85 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.85 Total: 7.82 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -0.32 Total: -13.88 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.02 Total: -52.27 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -2.00 Total: -28.28 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: 16.14 SS G_CDS: -0.81 Total: 15.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.30 -9.55 -45.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037860444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.387 kcal (2) G-P(sol) polarization free energy of solvation -36.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds