Wall clock time and date at job start Tue Mar 31 2020 07:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47395 * 2 1 4 4 C 1.50707 * 109.47002 * 120.00165 * 2 1 3 5 5 O 1.21282 * 120.00005 * 99.99588 * 4 2 1 6 6 N 1.34775 * 119.99945 * 279.99620 * 4 2 1 7 7 C 1.46945 * 120.44223 * 179.97438 * 6 4 2 8 8 C 1.53593 * 108.52970 * 125.75269 * 7 6 4 9 9 H 1.08999 * 110.59822 * 172.15924 * 8 7 6 10 10 C 1.53371 * 108.69033 * 294.36332 * 8 7 6 11 11 C 1.53003 * 109.26953 * 60.29224 * 10 8 7 12 12 C 1.53009 * 109.79705 * 60.56974 * 11 10 8 13 13 C 1.53367 * 109.25921 * 299.42213 * 12 11 10 14 14 H 1.08995 * 111.08755 * 177.83460 * 13 12 11 15 15 C 1.46941 * 120.44094 * 359.72702 * 6 4 2 16 16 N 1.47564 * 107.98280 * 56.37279 * 13 12 11 17 17 C 1.36947 * 121.60812 * 122.23719 * 16 13 12 18 18 H 1.08002 * 119.99277 * 27.53599 * 17 16 13 19 19 C 1.38803 * 120.00150 * 207.53301 * 17 16 13 20 20 N 1.31617 * 120.00016 * 18.62501 * 19 17 16 21 21 Si 1.86798 * 120.00203 * 198.62618 * 19 17 16 22 22 H 1.48504 * 109.47362 * 89.99851 * 21 19 17 23 23 H 1.48499 * 109.47299 * 210.00079 * 21 19 17 24 24 H 1.48496 * 109.47146 * 330.00119 * 21 19 17 25 25 S 1.81400 * 109.47075 * 239.99914 * 2 1 3 26 26 C 1.81398 * 101.91943 * 60.00026 * 25 2 1 27 27 O 1.42097 * 108.57746 * 305.51528 * 25 2 1 28 28 O 1.42099 * 108.58027 * 174.48874 * 25 2 1 29 29 H 1.08998 * 109.46886 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46976 * 299.99888 * 1 2 3 31 31 H 1.08995 * 109.46821 * 59.99786 * 1 2 3 32 32 H 1.09001 * 109.62725 * 245.47027 * 7 6 4 33 33 H 1.08996 * 109.62412 * 6.04520 * 7 6 4 34 34 H 1.08997 * 109.50279 * 180.23454 * 10 8 7 35 35 H 1.09002 * 109.49810 * 300.35653 * 10 8 7 36 36 H 1.09006 * 109.41540 * 300.46825 * 11 10 8 37 37 H 1.09001 * 109.36418 * 180.64332 * 11 10 8 38 38 H 1.09003 * 109.50708 * 179.48815 * 12 11 10 39 39 H 1.08992 * 109.54068 * 59.38093 * 12 11 10 40 40 H 1.08994 * 109.62964 * 353.95086 * 15 6 4 41 41 H 1.09004 * 109.62669 * 114.52152 * 15 6 4 42 42 H 0.97005 * 120.00090 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.46993 * 60.00441 * 26 25 2 44 44 H 1.09001 * 109.47652 * 300.00214 * 26 25 2 45 45 H 1.09007 * 109.47266 * 179.97438 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.4064 -1.8618 1.1558 6 7 2.0660 -0.0665 2.4140 7 6 2.5533 -0.7500 3.6200 8 6 3.6715 0.0984 4.2437 9 1 3.9634 -0.3049 5.2134 10 6 4.8624 0.1288 3.2776 11 6 4.4209 0.7511 1.9514 12 6 3.9356 2.1829 2.1869 13 6 2.7409 2.1604 3.1484 14 1 2.3946 3.1705 3.3672 15 6 1.6208 1.3303 2.5143 16 7 3.1648 1.4770 4.3857 17 6 3.0918 2.0927 5.6068 18 1 2.3551 2.8633 5.7798 19 6 3.9646 1.7264 6.6220 20 7 5.0742 1.0795 6.3344 21 14 3.5646 2.1516 8.3964 22 1 2.7841 1.0453 9.0067 23 1 4.8260 2.3449 9.1557 24 1 2.7654 3.4025 8.4376 25 16 2.1347 -0.8552 -1.4811 26 6 1.4229 0.1515 -2.8117 27 8 1.5479 -2.1484 -1.5284 28 8 3.5496 -0.7331 -1.5285 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7366 -0.8609 4.3333 33 1 2.9447 -1.7313 3.3517 34 1 5.6662 0.7248 3.7096 35 1 5.2154 -0.8876 3.1031 36 1 3.6106 0.1593 1.5254 37 1 5.2632 0.7630 1.2596 38 1 3.6309 2.6247 1.2381 39 1 4.7415 2.7742 2.6215 40 1 1.3992 1.7164 1.5194 41 1 0.7291 1.3864 3.1388 42 1 5.6840 0.8232 7.0440 43 1 1.7895 1.1747 -2.7291 44 1 0.3360 0.1471 -2.7291 45 1 1.7159 -0.2622 -3.7768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039686049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:46 Heat of formation + Delta-G solvation = -43.532231 kcal Electronic energy + Delta-G solvation = -29344.563013 eV Core-core repulsion = 25491.714399 eV Total energy + Delta-G solvation = -3852.848614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.89791 -38.01393 -37.02408 -36.00460 -34.48693 -33.46093 -32.77453 -31.79558 -30.43029 -29.66793 -27.07591 -25.74876 -24.91165 -23.58097 -21.66469 -21.34645 -19.93928 -18.70094 -18.38988 -17.82715 -16.90135 -16.54410 -16.04446 -15.78178 -15.26463 -14.85702 -14.72985 -14.17413 -13.99276 -13.66119 -13.52811 -13.49377 -13.36114 -13.16389 -12.93469 -12.51823 -12.47378 -12.21479 -12.14088 -12.05207 -11.97328 -11.81165 -11.45976 -11.23170 -11.13848 -11.00166 -10.78379 -10.62083 -10.34140 -10.25205 -10.06812 -10.03944 -9.86713 -9.50157 -9.34709 -8.56935 -7.99773 -6.70409 -5.88448 -3.32527 -0.22377 2.55164 2.64209 3.05090 3.31914 3.39322 3.40663 3.69931 3.84588 4.26016 4.34282 4.40655 4.51164 4.67258 4.81668 5.03679 5.08792 5.25487 5.28657 5.36368 5.52985 5.58092 5.63763 5.73931 5.79918 5.85373 5.94688 6.08346 6.21308 6.36989 6.37572 6.44977 6.57524 6.65410 6.81330 6.89508 7.04515 7.09131 7.45457 7.53751 7.65333 7.72810 8.21510 8.29996 9.06220 9.68601 10.29738 11.18172 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027301 B = 0.003964 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.374953 B = 7061.541832 C = 7163.719147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.620 4.620 3 H 0.156 0.844 4 C 0.543 3.457 5 O -0.540 6.540 6 N -0.573 5.573 7 C 0.090 3.910 8 C 0.177 3.823 9 H 0.118 0.882 10 C -0.114 4.114 11 C -0.141 4.141 12 C -0.126 4.126 13 C 0.149 3.851 14 H 0.081 0.919 15 C 0.090 3.910 16 N -0.577 5.577 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.007 3.993 20 N -0.893 5.893 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.280 1.280 25 S 2.447 3.553 26 C -0.665 4.665 27 O -0.915 6.915 28 O -0.924 6.924 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.810 2.031 -15.051 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.729 4.729 3 H 0.174 0.826 4 C 0.329 3.671 5 O -0.419 6.419 6 N -0.304 5.304 7 C -0.033 4.033 8 C 0.070 3.930 9 H 0.136 0.864 10 C -0.153 4.153 11 C -0.179 4.179 12 C -0.165 4.165 13 C 0.041 3.959 14 H 0.099 0.901 15 C -0.035 4.035 16 N -0.298 5.298 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.193 4.193 20 N -0.537 5.537 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.205 1.205 25 S 2.624 3.376 26 C -0.813 4.813 27 O -0.912 6.912 28 O -0.921 6.921 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.965 0.673 -14.937 17.434 hybrid contribution -0.511 1.288 0.992 1.704 sum -9.476 1.961 -13.945 16.974 Atomic orbital electron populations 1.21624 0.87808 1.05083 1.04913 1.30756 1.08900 1.15751 1.17452 0.82621 1.18750 0.78516 0.86062 0.83765 1.90839 1.49451 1.16628 1.84956 1.48016 1.61142 1.13302 1.07984 1.22665 0.99026 0.97178 0.84423 1.21191 0.88857 0.84385 0.98564 0.86430 1.21787 1.00070 0.98825 0.94586 1.22108 1.00683 0.96665 0.98412 1.22011 0.99830 0.97145 0.97507 1.21163 0.91750 0.94944 0.88060 0.90139 1.22469 0.99137 0.81224 1.00666 1.44426 1.74442 1.09828 1.01138 1.19124 1.12063 1.19708 0.87514 0.91444 1.25017 0.94625 1.00742 0.98875 1.69989 1.09226 1.43012 1.31432 0.86297 0.77245 0.78139 0.85070 1.21434 1.21810 1.20532 1.07496 0.76091 0.76692 0.77333 1.30430 1.14243 1.16874 1.19793 1.93577 1.79206 1.33415 1.85052 1.93608 1.26527 1.86625 1.85332 0.89769 0.89583 0.90355 0.91729 0.89768 0.90713 0.94209 0.91071 0.94267 0.94278 0.91884 0.90810 0.91166 0.93452 0.85164 0.85106 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.72 37.16 0.32 -0.77 16 2 C -0.62 -7.07 2.22 -27.88 -0.06 -7.13 16 3 H 0.16 1.33 6.52 -51.92 -0.34 0.99 16 4 C 0.54 9.13 4.20 -10.98 -0.05 9.08 16 5 O -0.54 -11.11 15.04 -3.36 -0.05 -11.16 16 6 N -0.57 -9.79 1.66 -172.51 -0.29 -10.08 16 7 C 0.09 1.76 5.89 -3.49 -0.02 1.74 16 8 C 0.18 3.94 2.67 -66.84 -0.18 3.76 16 9 H 0.12 2.98 5.88 -51.93 -0.31 2.67 16 10 C -0.11 -2.50 5.56 -26.54 -0.15 -2.64 16 11 C -0.14 -2.75 5.55 -26.72 -0.15 -2.90 16 12 C -0.13 -2.25 5.58 -26.54 -0.15 -2.40 16 13 C 0.15 2.71 3.62 -67.07 -0.24 2.46 16 14 H 0.08 1.40 8.01 -51.93 -0.42 0.98 16 15 C 0.09 1.33 5.03 -3.71 -0.02 1.31 16 16 N -0.58 -12.93 2.53 -155.68 -0.39 -13.33 16 17 C -0.25 -6.37 9.71 -15.06 -0.15 -6.52 16 18 H 0.07 1.66 7.90 -52.49 -0.41 1.24 16 19 C 0.01 0.18 4.97 -17.43 -0.09 0.09 16 20 N -0.89 -24.13 11.00 55.49 0.61 -23.52 16 21 Si 0.90 20.56 29.59 -169.99 -5.03 15.53 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 S 2.45 29.65 4.32 -107.50 -0.46 29.19 16 26 C -0.66 -3.90 10.17 101.05 1.03 -2.87 16 27 O -0.92 -14.34 17.40 -62.66 -1.09 -15.43 16 28 O -0.92 -15.00 18.10 -57.83 -1.05 -16.05 16 29 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 30 H 0.09 0.67 7.15 -51.93 -0.37 0.29 16 31 H 0.08 0.31 6.55 -51.93 -0.34 -0.03 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.69 6.98 -51.93 -0.36 1.33 16 34 H 0.07 1.84 7.99 -51.93 -0.41 1.42 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.34 2.50 -52.44 -0.13 1.21 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 0.81 5.09 -51.93 -0.26 0.55 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 43 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.13 0.45 6.87 -51.92 -0.36 0.09 16 45 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -34.80 347.79 -9.05 -43.86 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.65 Total: 2.52 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 0.11 Total: -6.78 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.07 Total: -46.93 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -2.19 Total: -42.63 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Atomic # 16 Polarization: 29.65 SS G_CDS: -0.46 Total: 29.19 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.80 -9.05 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039686049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.326 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds