Wall clock time and date at job start Tue Mar 31 2020 07:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47395 * 2 1 4 4 C 1.50707 * 109.47002 * 120.00165 * 2 1 3 5 5 O 1.21282 * 120.00005 * 99.99588 * 4 2 1 6 6 N 1.34775 * 119.99945 * 279.99620 * 4 2 1 7 7 C 1.46945 * 120.44223 * 179.97438 * 6 4 2 8 8 C 1.53593 * 108.52970 * 125.75269 * 7 6 4 9 9 H 1.08999 * 110.59822 * 172.15924 * 8 7 6 10 10 C 1.53371 * 108.69033 * 294.36332 * 8 7 6 11 11 C 1.53003 * 109.26953 * 60.29224 * 10 8 7 12 12 C 1.53009 * 109.79705 * 60.56974 * 11 10 8 13 13 C 1.53367 * 109.25921 * 299.42213 * 12 11 10 14 14 H 1.08995 * 111.08755 * 177.83460 * 13 12 11 15 15 C 1.46941 * 120.44094 * 359.72702 * 6 4 2 16 16 N 1.47564 * 107.98280 * 56.37279 * 13 12 11 17 17 C 1.36947 * 121.60812 * 122.23719 * 16 13 12 18 18 H 1.08002 * 119.99277 * 27.53599 * 17 16 13 19 19 C 1.38803 * 120.00150 * 207.53301 * 17 16 13 20 20 N 1.31617 * 120.00016 * 18.62501 * 19 17 16 21 21 Si 1.86798 * 120.00203 * 198.62618 * 19 17 16 22 22 H 1.48504 * 109.47362 * 89.99851 * 21 19 17 23 23 H 1.48499 * 109.47299 * 210.00079 * 21 19 17 24 24 H 1.48496 * 109.47146 * 330.00119 * 21 19 17 25 25 S 1.81400 * 109.47075 * 239.99914 * 2 1 3 26 26 C 1.81398 * 101.91943 * 60.00026 * 25 2 1 27 27 O 1.42097 * 108.57746 * 305.51528 * 25 2 1 28 28 O 1.42099 * 108.58027 * 174.48874 * 25 2 1 29 29 H 1.08998 * 109.46886 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46976 * 299.99888 * 1 2 3 31 31 H 1.08995 * 109.46821 * 59.99786 * 1 2 3 32 32 H 1.09001 * 109.62725 * 245.47027 * 7 6 4 33 33 H 1.08996 * 109.62412 * 6.04520 * 7 6 4 34 34 H 1.08997 * 109.50279 * 180.23454 * 10 8 7 35 35 H 1.09002 * 109.49810 * 300.35653 * 10 8 7 36 36 H 1.09006 * 109.41540 * 300.46825 * 11 10 8 37 37 H 1.09001 * 109.36418 * 180.64332 * 11 10 8 38 38 H 1.09003 * 109.50708 * 179.48815 * 12 11 10 39 39 H 1.08992 * 109.54068 * 59.38093 * 12 11 10 40 40 H 1.08994 * 109.62964 * 353.95086 * 15 6 4 41 41 H 1.09004 * 109.62669 * 114.52152 * 15 6 4 42 42 H 0.97005 * 120.00090 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.46993 * 60.00441 * 26 25 2 44 44 H 1.09001 * 109.47652 * 300.00214 * 26 25 2 45 45 H 1.09007 * 109.47266 * 179.97438 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.4064 -1.8618 1.1558 6 7 2.0660 -0.0665 2.4140 7 6 2.5533 -0.7500 3.6200 8 6 3.6715 0.0984 4.2437 9 1 3.9634 -0.3049 5.2134 10 6 4.8624 0.1288 3.2776 11 6 4.4209 0.7511 1.9514 12 6 3.9356 2.1829 2.1869 13 6 2.7409 2.1604 3.1484 14 1 2.3946 3.1705 3.3672 15 6 1.6208 1.3303 2.5143 16 7 3.1648 1.4770 4.3857 17 6 3.0918 2.0927 5.6068 18 1 2.3551 2.8633 5.7798 19 6 3.9646 1.7264 6.6220 20 7 5.0742 1.0795 6.3344 21 14 3.5646 2.1516 8.3964 22 1 2.7841 1.0453 9.0067 23 1 4.8260 2.3449 9.1557 24 1 2.7654 3.4025 8.4376 25 16 2.1347 -0.8552 -1.4811 26 6 1.4229 0.1515 -2.8117 27 8 1.5479 -2.1484 -1.5284 28 8 3.5496 -0.7331 -1.5285 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7366 -0.8609 4.3333 33 1 2.9447 -1.7313 3.3517 34 1 5.6662 0.7248 3.7096 35 1 5.2154 -0.8876 3.1031 36 1 3.6106 0.1593 1.5254 37 1 5.2632 0.7630 1.2596 38 1 3.6309 2.6247 1.2381 39 1 4.7415 2.7742 2.6215 40 1 1.3992 1.7164 1.5194 41 1 0.7291 1.3864 3.1388 42 1 5.6840 0.8232 7.0440 43 1 1.7895 1.1747 -2.7291 44 1 0.3360 0.1471 -2.7291 45 1 1.7159 -0.2622 -3.7768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039686049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:45 Heat of formation + Delta-G solvation = -69.625005 kcal Electronic energy + Delta-G solvation = -29345.694481 eV Core-core repulsion = 25491.714399 eV Total energy + Delta-G solvation = -3853.980082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.30536 -39.50154 -38.01042 -36.97953 -35.91375 -34.73079 -34.33075 -33.28964 -32.17427 -30.22121 -28.62087 -27.19654 -26.04326 -25.10246 -23.24503 -22.93090 -21.24060 -20.09925 -19.58853 -19.07325 -18.09803 -17.87123 -17.05167 -16.93324 -16.56875 -16.44869 -16.14169 -15.75140 -15.26367 -15.13594 -14.82862 -14.61153 -14.28848 -14.03614 -13.97464 -13.90466 -13.65421 -13.43948 -13.23807 -13.09155 -13.07870 -13.06683 -12.99313 -12.85937 -12.60785 -12.46555 -12.11652 -11.95896 -11.88759 -11.81587 -11.70600 -11.41909 -11.30928 -11.13083 -10.89107 -10.46515 -9.53691 -8.50103 -7.81780 -5.27286 -1.03145 1.35792 1.48723 1.51489 1.58164 1.78594 1.84648 2.52534 2.80316 3.06092 3.28076 3.31438 3.48746 3.70818 3.91079 4.10183 4.14813 4.15194 4.20406 4.24724 4.30345 4.35463 4.42118 4.58458 4.66138 4.70550 4.72871 4.78347 4.85109 4.87490 5.01100 5.03822 5.10162 5.23093 5.23898 5.31303 5.37960 5.51105 5.63049 5.71195 5.80517 6.33240 6.40346 6.91217 7.14461 7.84267 8.42818 9.21956 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027301 B = 0.003964 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.374953 B = 7061.541832 C = 7163.719147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.611 4.611 3 H 0.195 0.805 4 C 0.531 3.469 5 O -0.588 6.588 6 N -0.576 5.576 7 C 0.101 3.899 8 C 0.180 3.820 9 H 0.078 0.922 10 C -0.108 4.108 11 C -0.140 4.140 12 C -0.120 4.120 13 C 0.140 3.860 14 H 0.097 0.903 15 C 0.093 3.907 16 N -0.592 5.592 17 C -0.252 4.252 18 H 0.076 0.924 19 C -0.047 4.047 20 N -0.926 5.926 21 Si 0.960 3.040 22 H -0.292 1.292 23 H -0.304 1.304 24 H -0.266 1.266 25 S 2.417 3.583 26 C -0.622 4.622 27 O -0.971 6.971 28 O -0.985 6.985 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.134 0.866 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.026 0.974 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.246 0.754 43 H 0.167 0.833 44 H 0.169 0.831 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.495 5.280 -18.194 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.720 4.720 3 H 0.212 0.788 4 C 0.320 3.680 5 O -0.470 6.470 6 N -0.307 5.307 7 C -0.024 4.024 8 C 0.072 3.928 9 H 0.096 0.904 10 C -0.148 4.148 11 C -0.178 4.178 12 C -0.159 4.159 13 C 0.033 3.967 14 H 0.115 0.885 15 C -0.030 4.030 16 N -0.313 5.313 17 C -0.382 4.382 18 H 0.094 0.906 19 C -0.243 4.243 20 N -0.571 5.571 21 Si 0.790 3.210 22 H -0.219 1.219 23 H -0.232 1.232 24 H -0.191 1.191 25 S 2.602 3.398 26 C -0.777 4.777 27 O -0.968 6.968 28 O -0.982 6.982 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.052 0.948 40 H 0.146 0.854 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.185 0.815 44 H 0.187 0.813 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.662 3.920 -18.072 22.411 hybrid contribution 0.595 0.309 1.875 1.991 sum -12.066 4.229 -16.197 20.635 Atomic orbital electron populations 1.21868 0.84689 1.05137 1.08218 1.30766 1.11326 1.16461 1.13471 0.78821 1.19744 0.77377 0.85845 0.85026 1.90827 1.51137 1.19196 1.85847 1.48049 1.61087 1.14285 1.07271 1.22228 0.98070 0.96187 0.85877 1.20895 0.89766 0.85268 0.96868 0.90385 1.21671 0.99155 0.97631 0.96311 1.22138 1.01079 0.98227 0.96377 1.21972 0.98869 0.95258 0.99783 1.21500 0.92794 0.96108 0.86268 0.88543 1.22620 0.97705 0.79007 1.03677 1.44584 1.74489 1.09995 1.02280 1.19473 1.11173 1.18834 0.88688 0.90592 1.25675 0.94823 1.01727 1.02038 1.70164 1.10324 1.45036 1.31601 0.85379 0.76315 0.78093 0.81256 1.21886 1.23151 1.19080 1.07894 0.75341 0.77383 0.79192 1.30114 1.15961 1.16392 1.15216 1.93514 1.79408 1.37822 1.86101 1.93540 1.30509 1.87650 1.86471 0.91551 0.88569 0.84749 0.91572 0.91374 0.94344 0.95562 0.89747 0.94682 0.89096 0.94755 0.85395 0.89954 0.94524 0.81459 0.81267 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.72 71.98 0.63 -0.84 16 2 C -0.61 -11.30 2.22 29.85 0.07 -11.23 16 3 H 0.19 1.92 6.52 -2.39 -0.02 1.90 16 4 C 0.53 17.11 4.20 87.66 0.37 17.47 16 5 O -0.59 -24.95 15.04 5.48 0.08 -24.86 16 6 N -0.58 -18.74 1.66 -818.08 -1.36 -20.10 16 7 C 0.10 4.06 5.89 86.49 0.51 4.57 16 8 C 0.18 8.37 2.67 45.11 0.12 8.49 16 9 H 0.08 4.26 5.88 -2.39 -0.01 4.25 16 10 C -0.11 -5.07 5.56 30.72 0.17 -4.90 16 11 C -0.14 -5.47 5.55 30.60 0.17 -5.30 16 12 C -0.12 -3.99 5.58 30.72 0.17 -3.82 16 13 C 0.14 4.67 3.62 44.97 0.16 4.84 16 14 H 0.10 2.95 8.01 -2.39 -0.02 2.93 16 15 C 0.09 2.34 5.03 86.35 0.43 2.78 16 16 N -0.59 -26.50 2.53 -646.46 -1.64 -28.14 16 17 C -0.25 -12.58 9.71 84.03 0.82 -11.76 16 18 H 0.08 3.61 7.90 -2.91 -0.02 3.59 16 19 C -0.05 -2.47 4.97 84.86 0.42 -2.05 16 20 N -0.93 -52.84 11.00 21.65 0.24 -52.61 16 21 Si 0.96 43.27 29.59 68.60 2.03 45.30 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 S 2.42 52.72 4.32 -56.49 -0.24 52.47 16 26 C -0.62 -3.00 10.17 113.37 1.15 -1.85 16 27 O -0.97 -30.23 17.40 -122.75 -2.14 -32.37 16 28 O -0.98 -31.51 18.10 -127.37 -2.30 -33.81 16 29 H 0.07 0.98 8.06 -2.39 -0.02 0.96 16 30 H 0.10 0.87 7.15 -2.39 -0.02 0.85 16 31 H 0.13 -0.11 6.55 -2.39 -0.02 -0.12 16 32 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.93 6.98 -2.39 -0.02 2.92 16 34 H 0.04 2.03 7.99 -2.39 -0.02 2.01 16 35 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 3.11 2.50 -3.40 -0.01 3.10 16 37 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.13 1.85 5.09 -2.39 -0.01 1.84 16 41 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.25 13.91 8.31 -92.70 -0.77 13.14 16 43 H 0.17 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.17 -0.33 6.87 -2.39 -0.02 -0.35 16 45 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -87.29 347.79 0.86 -86.42 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.00 Total: 11.28 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.19 Total: -3.60 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -2.76 Total: -100.84 kcal Atomic # 8 Polarization: -86.68 SS G_CDS: -4.36 Total: -91.04 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 52.72 SS G_CDS: -0.24 Total: 52.47 kcal Total: -87.29 0.86 -86.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039686049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.800 kcal (2) G-P(sol) polarization free energy of solvation -87.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds