Wall clock time and date at job start Tue Mar 31 2020 07:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 109.47042 * 2 1 4 4 C 1.50697 * 109.46963 * 239.99606 * 2 1 3 5 5 O 1.21283 * 120.00318 * 264.72234 * 4 2 1 6 6 N 1.34779 * 120.00093 * 85.00656 * 4 2 1 7 7 C 1.46950 * 120.43950 * 359.44437 * 6 4 2 8 8 C 1.54063 * 108.29935 * 125.72366 * 7 6 4 9 9 H 1.08995 * 110.52320 * 172.87039 * 8 7 6 10 10 C 1.53364 * 108.83639 * 294.50991 * 8 7 6 11 11 C 1.53012 * 109.25179 * 60.25658 * 10 8 7 12 12 C 1.53013 * 109.80041 * 60.57552 * 11 10 8 13 13 C 1.53368 * 109.27719 * 299.44623 * 12 11 10 14 14 H 1.08995 * 110.59495 * 178.09820 * 13 12 11 15 15 C 1.46945 * 120.44282 * 179.72376 * 6 4 2 16 16 N 1.47567 * 107.69720 * 51.33752 * 8 7 6 17 17 C 1.36939 * 121.61145 * 120.37509 * 16 8 7 18 18 H 1.07998 * 120.00433 * 152.59590 * 17 16 8 19 19 C 1.38809 * 119.99668 * 332.58766 * 17 16 8 20 20 N 1.31614 * 120.00338 * 341.94751 * 19 17 16 21 21 Si 1.86803 * 119.99796 * 161.94970 * 19 17 16 22 22 H 1.48502 * 109.47245 * 90.00171 * 21 19 17 23 23 H 1.48506 * 109.47025 * 209.99972 * 21 19 17 24 24 H 1.48497 * 109.46887 * 329.99707 * 21 19 17 25 25 S 1.81402 * 109.46946 * 120.00095 * 2 1 3 26 26 C 1.81405 * 101.91945 * 304.99921 * 25 2 1 27 27 O 1.42097 * 108.57817 * 59.48436 * 25 2 1 28 28 O 1.42104 * 108.57790 * 190.51398 * 25 2 1 29 29 H 1.08996 * 109.47057 * 300.00173 * 1 2 3 30 30 H 1.08997 * 109.46636 * 60.00201 * 1 2 3 31 31 H 1.08992 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.62288 * 245.49353 * 7 6 4 33 33 H 1.08999 * 109.62109 * 6.04845 * 7 6 4 34 34 H 1.08995 * 109.51093 * 300.32473 * 10 8 7 35 35 H 1.08997 * 109.54609 * 180.20980 * 10 8 7 36 36 H 1.08994 * 109.41818 * 300.47613 * 11 10 8 37 37 H 1.08999 * 109.36279 * 180.63960 * 11 10 8 38 38 H 1.08992 * 109.50566 * 179.49838 * 12 11 10 39 39 H 1.09002 * 109.53257 * 59.40176 * 12 11 10 40 40 H 1.08992 * 109.62744 * 353.95965 * 15 6 4 41 41 H 1.08998 * 109.62721 * 114.34447 * 15 6 4 42 42 H 0.97004 * 120.00358 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.47249 * 60.00175 * 26 25 2 44 44 H 1.09002 * 109.47161 * 180.02562 * 26 25 2 45 45 H 1.09003 * 109.47059 * 299.99950 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3256 -1.8860 -1.1747 6 7 2.1612 -0.0382 -2.3914 7 6 1.8032 1.3848 -2.4714 8 6 3.0138 2.1576 -3.0289 9 1 2.7478 3.1968 -3.2218 10 6 4.1632 2.0739 -2.0171 11 6 4.5420 0.6068 -1.8040 12 6 5.0000 -0.0079 -3.1283 13 6 3.8542 0.0682 -4.1450 14 1 4.1687 -0.3341 -5.1079 15 6 2.6558 -0.7199 -3.5956 16 7 3.4463 1.4812 -4.2670 17 6 3.4684 2.1331 -5.4710 18 1 4.1603 1.8235 -6.2402 19 6 2.6012 3.1919 -5.7028 20 7 1.5380 3.3503 -4.9433 21 14 2.9431 4.3921 -7.0928 22 1 2.2896 3.9093 -8.3358 23 1 2.4030 5.7289 -6.7367 24 1 4.4086 4.4924 -7.3108 25 16 2.1347 -0.8552 1.4811 26 6 1.2997 0.0577 2.8079 27 8 1.6408 -2.1875 1.4680 28 8 3.5342 -0.6350 1.5914 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.9477 1.5102 -3.1352 33 1 1.5559 1.7564 -1.4770 34 1 3.8465 2.5092 -1.0694 35 1 5.0255 2.6206 -2.3987 36 1 3.6764 0.0595 -1.4309 37 1 5.3513 0.5444 -1.0766 38 1 5.2770 -1.0500 -2.9694 39 1 5.8604 0.5435 -3.5078 40 1 2.9690 -1.7322 -3.3406 41 1 1.8652 -0.7590 -4.3449 42 1 0.9322 4.0904 -5.1050 43 1 0.2202 -0.0209 2.6794 44 1 1.5828 -0.3635 3.7726 45 1 1.5949 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039686050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:51 Heat of formation + Delta-G solvation = -44.206718 kcal Electronic energy + Delta-G solvation = -29462.162113 eV Core-core repulsion = 25609.284251 eV Total energy + Delta-G solvation = -3852.877862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.81056 -37.97274 -36.96357 -35.95750 -34.30345 -33.54183 -32.83258 -31.80801 -30.29668 -29.62520 -27.06503 -25.76221 -24.81862 -23.51251 -21.75318 -21.34836 -19.86719 -18.64940 -18.36808 -17.75348 -16.97289 -16.36970 -15.94213 -15.71437 -15.24121 -14.94570 -14.65478 -14.08831 -13.95206 -13.62068 -13.50208 -13.41892 -13.27822 -13.09437 -12.88263 -12.58637 -12.37407 -12.21480 -12.11077 -12.01791 -11.95290 -11.91080 -11.42315 -11.11118 -11.08582 -11.01791 -10.75573 -10.56193 -10.37406 -10.26756 -10.18046 -10.09214 -9.81551 -9.55687 -9.30035 -8.73854 -7.89080 -6.71811 -5.95770 -3.35221 -0.16087 2.60954 2.72159 3.14670 3.29112 3.37149 3.40065 3.75955 3.92409 4.34895 4.40746 4.45445 4.57146 4.79924 4.88720 5.10899 5.18185 5.22881 5.39470 5.44497 5.62606 5.69943 5.72402 5.75345 5.83299 5.86872 5.97407 6.15754 6.30153 6.32186 6.38448 6.47547 6.56719 6.60377 6.70402 6.83753 6.94758 7.00126 7.16622 7.38456 7.66310 7.78628 8.25457 8.31059 9.03236 9.65172 10.26678 11.13132 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.004305 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.168686 B = 6503.230497 C = 6807.993269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.618 4.618 3 H 0.157 0.843 4 C 0.538 3.462 5 O -0.544 6.544 6 N -0.573 5.573 7 C 0.095 3.905 8 C 0.177 3.823 9 H 0.117 0.883 10 C -0.135 4.135 11 C -0.140 4.140 12 C -0.123 4.123 13 C 0.153 3.847 14 H 0.081 0.919 15 C 0.099 3.901 16 N -0.578 5.578 17 C -0.245 4.245 18 H 0.067 0.933 19 C 0.004 3.996 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 S 2.444 3.556 26 C -0.664 4.664 27 O -0.913 6.913 28 O -0.928 6.928 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.254 0.746 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 -2.105 12.546 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.727 4.727 3 H 0.175 0.825 4 C 0.325 3.675 5 O -0.424 6.424 6 N -0.304 5.304 7 C -0.028 4.028 8 C 0.070 3.930 9 H 0.135 0.865 10 C -0.174 4.174 11 C -0.178 4.178 12 C -0.162 4.162 13 C 0.045 3.955 14 H 0.099 0.901 15 C -0.025 4.025 16 N -0.299 5.299 17 C -0.375 4.375 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.206 1.206 25 S 2.621 3.379 26 C -0.813 4.813 27 O -0.910 6.910 28 O -0.926 6.926 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.463 -3.251 12.525 13.172 hybrid contribution -0.479 1.693 -0.780 1.925 sum -2.942 -1.558 11.745 12.208 Atomic orbital electron populations 1.21623 0.87782 1.04883 1.05156 1.30716 1.08976 1.15803 1.17164 0.82539 1.18786 0.78445 0.86394 0.83921 1.90833 1.51946 1.14984 1.84610 1.48145 1.61298 1.12068 1.08877 1.22723 1.01557 0.78176 1.00354 1.21191 0.88838 0.98653 0.84364 0.86546 1.22162 1.00762 0.95949 0.98538 1.22077 1.01504 0.97133 0.97089 1.21932 0.98887 0.99104 0.96322 1.21255 0.91356 0.86393 0.96452 0.90121 1.22357 0.98281 0.96422 0.85453 1.44353 1.76626 1.05013 1.03913 1.19165 1.13910 1.12154 0.92237 0.91478 1.24938 0.94867 1.01172 0.98423 1.69925 1.11955 1.31620 1.41390 0.86282 0.77955 0.80672 0.81765 1.21463 1.21592 1.20559 1.07560 0.76221 0.76665 0.77454 1.30424 1.15300 1.15988 1.19593 1.93585 1.81613 1.30738 1.85052 1.93600 1.27432 1.86356 1.85167 0.90317 0.89368 0.89933 0.88970 0.91831 0.93800 0.92381 0.90552 0.93996 0.93188 0.92429 0.90031 0.91335 0.93565 0.85010 0.85090 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.77 37.16 0.33 -0.99 16 2 C -0.62 -7.84 2.27 -27.88 -0.06 -7.90 16 3 H 0.16 1.63 6.26 -51.93 -0.33 1.30 16 4 C 0.54 9.47 4.15 -10.99 -0.05 9.42 16 5 O -0.54 -11.25 14.87 -9.37 -0.14 -11.39 16 6 N -0.57 -10.44 1.64 -171.95 -0.28 -10.72 16 7 C 0.10 1.73 5.40 -3.24 -0.02 1.71 16 8 C 0.18 3.65 2.63 -66.60 -0.18 3.48 16 9 H 0.12 2.70 5.96 -51.93 -0.31 2.39 16 10 C -0.13 -2.50 5.59 -26.54 -0.15 -2.65 16 11 C -0.14 -2.62 5.55 -26.72 -0.15 -2.77 16 12 C -0.12 -2.31 5.58 -26.53 -0.15 -2.46 16 13 C 0.15 3.05 3.61 -66.84 -0.24 2.81 16 14 H 0.08 1.57 8.03 -51.93 -0.42 1.15 16 15 C 0.10 1.89 5.89 -3.49 -0.02 1.86 16 16 N -0.58 -12.98 2.53 -155.16 -0.39 -13.38 16 17 C -0.25 -6.13 9.73 -15.06 -0.15 -6.28 16 18 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 19 C 0.00 0.11 4.99 -17.43 -0.09 0.02 16 20 N -0.90 -22.93 10.71 55.49 0.59 -22.34 16 21 Si 0.90 20.26 29.59 -169.99 -5.03 15.23 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 S 2.44 31.18 4.52 -107.50 -0.49 30.70 16 26 C -0.66 -4.44 10.01 101.05 1.01 -3.42 16 27 O -0.91 -14.94 17.21 -64.28 -1.11 -16.05 16 28 O -0.93 -15.14 18.10 -57.83 -1.05 -16.18 16 29 H 0.08 0.43 6.39 -51.93 -0.33 0.10 16 30 H 0.09 0.90 7.70 -51.93 -0.40 0.50 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.90 7.74 -51.93 -0.40 1.50 16 33 H 0.06 0.94 5.23 -51.93 -0.27 0.66 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.44 2.50 -52.43 -0.13 1.30 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.53 6.98 -51.93 -0.36 1.17 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.25 6.34 8.31 -40.82 -0.34 6.00 16 43 H 0.13 0.59 6.77 -51.92 -0.35 0.24 16 44 H 0.13 0.74 8.14 -51.92 -0.42 0.31 16 45 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -33.19 347.70 -9.21 -42.40 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.66 Total: 3.66 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 0.10 Total: -7.18 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.08 Total: -46.43 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -2.29 Total: -43.62 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Atomic # 16 Polarization: 31.18 SS G_CDS: -0.49 Total: 30.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.19 -9.21 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039686050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.805 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds