Wall clock time and date at job start Tue Mar 31 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46246 * 2 1 4 4 C 1.34780 * 120.00492 * 60.02445 * 3 2 1 5 5 O 1.21286 * 119.99235 * 0.02562 * 4 3 2 6 6 C 1.50686 * 120.00281 * 180.02562 * 4 3 2 7 7 H 1.08999 * 110.05791 * 301.40601 * 6 4 3 8 8 C 1.53882 * 110.02773 * 180.02562 * 6 4 3 9 9 C 1.54163 * 108.70510 * 193.52899 * 8 6 4 10 10 S 1.82911 * 105.08769 * 27.90900 * 9 8 6 11 11 O 1.42106 * 109.35468 * 111.27456 * 10 9 8 12 12 O 1.42101 * 109.35487 * 244.34242 * 10 9 8 13 13 C 1.55405 * 110.04828 * 62.66178 * 6 4 3 14 14 C 1.53041 * 109.44957 * 119.96734 * 2 1 3 15 15 C 1.53187 * 109.31080 * 181.37797 * 14 2 1 16 16 N 1.46927 * 108.77662 * 305.36357 * 15 14 2 17 17 C 1.36941 * 120.63021 * 233.63479 * 16 15 14 18 18 H 1.08008 * 119.99829 * 27.65726 * 17 16 15 19 19 C 1.38810 * 119.99852 * 207.65928 * 17 16 15 20 20 N 1.31615 * 120.00055 * 17.37008 * 19 17 16 21 21 Si 1.86806 * 119.99915 * 197.36981 * 19 17 16 22 22 H 1.48499 * 109.47013 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46826 * 119.99865 * 21 19 17 24 24 H 1.48500 * 109.47254 * 240.00061 * 21 19 17 25 25 C 1.46922 * 118.73844 * 53.60860 * 16 15 14 26 26 C 1.53046 * 109.45631 * 240.02916 * 2 1 3 27 27 H 1.09002 * 109.47091 * 59.99800 * 1 2 3 28 28 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46858 * 300.00221 * 1 2 3 30 30 H 0.97001 * 120.00146 * 240.03378 * 3 2 1 31 31 H 1.09000 * 109.64808 * 73.67796 * 8 6 4 32 32 H 1.08995 * 109.64701 * 313.38269 * 8 6 4 33 33 H 1.09000 * 110.31972 * 269.00725 * 9 8 6 34 34 H 1.08997 * 110.31973 * 146.81132 * 9 8 6 35 35 H 1.08998 * 110.75842 * 43.43821 * 13 6 4 36 36 H 1.09007 * 110.95114 * 279.89183 * 13 6 4 37 37 H 1.08998 * 109.49502 * 301.32923 * 14 2 1 38 38 H 1.08997 * 109.49799 * 61.42344 * 14 2 1 39 39 H 1.09004 * 109.58572 * 185.57671 * 15 14 2 40 40 H 1.09001 * 109.70747 * 65.21842 * 15 14 2 41 41 H 0.97006 * 120.00037 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.58257 * 186.60725 * 25 16 15 43 43 H 1.08998 * 109.70254 * 66.25196 * 25 16 15 44 44 H 1.09001 * 109.49697 * 298.57613 * 26 2 1 45 45 H 1.08988 * 109.49984 * 58.67648 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6929 2.2110 1.0110 5 8 0.9964 1.8139 1.9211 6 6 2.1945 3.6320 1.0107 7 1 3.2841 3.6437 0.9848 8 6 1.6897 4.3694 2.2634 9 6 1.9211 5.8817 2.0738 10 16 1.8641 6.1490 0.2652 11 8 0.6972 6.8899 -0.0647 12 8 3.1361 6.5941 -0.1854 13 6 1.6281 4.3966 -0.2179 14 6 2.0396 -0.7208 1.2502 15 6 3.5711 -0.6889 1.2644 16 7 4.0676 -1.2493 0.0002 17 6 4.9753 -2.2747 0.0004 18 1 5.0078 -2.9670 0.8288 19 6 5.8534 -2.4244 -1.0642 20 7 6.0601 -1.4228 -1.8926 21 14 6.7418 -4.0475 -1.3210 22 1 6.3384 -5.0058 -0.2607 23 1 6.3841 -4.6024 -2.6512 24 1 8.2085 -3.8248 -1.2556 25 6 3.5713 -0.6891 -1.2641 26 6 2.0398 -0.7209 -1.2501 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.5754 1.6988 -0.7277 31 1 2.2378 4.0217 3.1391 32 1 0.6257 4.1756 2.3989 33 1 2.8962 6.1677 2.4681 34 1 1.1316 6.4500 2.5655 35 1 0.5705 4.1731 -0.3581 36 1 2.1965 4.1632 -1.1183 37 1 1.6570 -0.2207 2.1398 38 1 1.6973 -1.7556 1.2384 39 1 3.9412 -1.2849 2.0987 40 1 3.9164 0.3397 1.3687 41 1 6.6735 -1.5275 -2.6368 42 1 3.9416 -1.2852 -2.0981 43 1 3.9145 0.3401 -1.3697 44 1 1.6976 -1.7557 -1.2383 45 1 1.6574 -0.2209 -2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045493986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:50 Heat of formation + Delta-G solvation = -86.097164 kcal Electronic energy + Delta-G solvation = -27885.465159 eV Core-core repulsion = 24030.770792 eV Total energy + Delta-G solvation = -3854.694368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45116 -37.94211 -37.30550 -36.32872 -35.82527 -34.49034 -32.22657 -31.09157 -30.10770 -29.86267 -27.49738 -26.09975 -24.17849 -23.06023 -22.33670 -21.04070 -20.14490 -19.14530 -18.74490 -17.77553 -17.16747 -16.80221 -16.26386 -15.94069 -15.16673 -15.00563 -14.88515 -14.47257 -14.18793 -14.12319 -13.79451 -13.48507 -13.24534 -13.19952 -12.79816 -12.62795 -12.47056 -12.42734 -12.28049 -12.16132 -11.84827 -11.72444 -11.40130 -11.36409 -11.30093 -11.16077 -10.99910 -10.78080 -10.68677 -10.41786 -10.32829 -9.93493 -9.85478 -9.69751 -9.22324 -8.74969 -8.52294 -6.73151 -5.85685 -3.26861 -0.28326 2.17196 2.63751 3.19760 3.31984 3.33052 3.41692 3.43674 3.70124 4.07187 4.18830 4.31513 4.44974 4.46096 4.57583 4.87028 5.07936 5.17825 5.23072 5.29732 5.33074 5.39806 5.46062 5.54027 5.57470 5.72516 5.91001 5.97236 6.10757 6.21148 6.25284 6.32820 6.45706 6.58163 6.61469 6.75255 6.87135 6.97598 7.21532 7.51296 7.72153 7.76433 8.34764 8.38637 9.15277 9.78689 10.35022 11.22954 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.003291 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.926616 B = 8504.985583 C = 9168.710951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 N -0.703 5.703 4 C 0.532 3.468 5 O -0.536 6.536 6 C -0.115 4.115 7 H 0.122 0.878 8 C -0.095 4.095 9 C -0.590 4.590 10 S 2.391 3.609 11 O -0.939 6.939 12 O -0.933 6.933 13 C -0.583 4.583 14 C -0.143 4.143 15 C 0.150 3.850 16 N -0.591 5.591 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.904 5.904 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.171 3.829 26 C -0.146 4.146 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.402 0.598 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.014 0.986 41 H 0.253 0.747 42 H 0.090 0.910 43 H 0.016 0.984 44 H 0.072 0.928 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 12.123 4.654 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.098 3.902 3 N -0.354 5.354 4 C 0.316 3.684 5 O -0.414 6.414 6 C -0.138 4.138 7 H 0.140 0.860 8 C -0.134 4.134 9 C -0.720 4.720 10 S 2.574 3.426 11 O -0.936 6.936 12 O -0.930 6.930 13 C -0.713 4.713 14 C -0.183 4.183 15 C 0.024 3.976 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.045 3.955 26 C -0.186 4.186 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.237 0.763 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.034 0.966 44 H 0.090 0.910 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.970 12.648 4.612 17.366 hybrid contribution 0.833 -1.392 -0.203 1.635 sum -10.136 11.256 4.409 15.776 Atomic orbital electron populations 1.22228 0.95327 1.02035 1.02294 1.20319 0.92632 0.79907 0.97360 1.46140 1.52497 1.12175 1.24568 1.19723 0.80415 0.85999 0.82278 1.90642 1.38223 1.76757 1.35777 1.22122 1.03509 0.94930 0.93192 0.86049 1.21707 1.05012 0.88547 0.98090 1.30510 1.11946 1.04984 1.24583 1.09067 0.75383 0.78368 0.79755 1.93617 1.49512 1.68234 1.82276 1.93645 1.41127 1.79004 1.79221 1.30783 1.11406 1.22938 1.06140 1.22399 0.98999 0.99738 0.97144 1.20833 0.90836 0.96051 0.89895 1.44041 1.48264 1.39663 0.99377 1.19241 1.09761 1.02934 1.06129 0.91673 1.25005 0.97196 0.97463 0.99921 1.70020 1.37841 1.28994 1.17991 0.86246 0.79170 0.83730 0.77770 1.20277 1.21569 1.21736 1.20745 0.86799 0.97101 0.90861 1.22533 1.01478 1.00083 0.94508 0.93323 0.92169 0.90892 0.76308 0.88197 0.88504 0.84287 0.84146 0.83893 0.83558 0.90843 0.91779 0.93105 0.96807 0.93691 0.89211 0.96636 0.90954 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.40 37.16 0.31 -1.91 16 2 C 0.18 2.82 0.66 -131.77 -0.09 2.74 16 3 N -0.70 -9.60 4.05 -47.57 -0.19 -9.79 16 4 C 0.53 6.79 6.57 -10.99 -0.07 6.72 16 5 O -0.54 -8.15 12.03 5.55 0.07 -8.08 16 6 C -0.11 -1.03 2.96 -90.04 -0.27 -1.30 16 7 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 8 C -0.09 -0.72 5.25 -25.66 -0.13 -0.85 16 9 C -0.59 -3.43 7.26 37.77 0.27 -3.15 16 10 S 2.39 19.40 6.09 -107.50 -0.66 18.75 16 11 O -0.94 -10.83 18.15 -57.73 -1.05 -11.87 16 12 O -0.93 -11.00 18.15 -57.73 -1.05 -12.05 16 13 C -0.58 -4.25 6.65 38.43 0.26 -4.00 16 14 C -0.14 -2.49 4.67 -26.61 -0.12 -2.62 16 15 C 0.15 3.07 6.25 -3.71 -0.02 3.04 16 16 N -0.59 -13.93 2.99 -172.32 -0.52 -14.44 16 17 C -0.25 -6.65 9.58 -15.06 -0.14 -6.80 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -25.06 11.19 55.49 0.62 -24.44 16 21 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.17 3.68 5.03 -3.71 -0.02 3.66 16 26 C -0.15 -2.48 4.96 -26.61 -0.13 -2.61 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.07 6.17 -51.93 -0.32 0.75 16 30 H 0.40 5.12 7.27 -40.82 -0.30 4.82 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.76 7.68 -51.93 -0.40 0.36 16 33 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.14 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.15 0.89 8.14 -51.92 -0.42 0.46 16 37 H 0.07 1.28 6.20 -51.93 -0.32 0.96 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 40 H 0.01 0.29 7.74 -51.93 -0.40 -0.11 16 41 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.09 2.23 6.03 -51.93 -0.31 1.91 16 43 H 0.02 0.34 6.94 -51.93 -0.36 -0.02 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.05 0.81 8.14 -51.94 -0.42 0.39 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -34.87 358.41 -9.67 -44.54 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.02 Total: 2.99 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.25 Total: -7.09 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.09 Total: -48.67 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -2.03 Total: -32.01 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 16 Polarization: 19.40 SS G_CDS: -0.66 Total: 18.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.87 -9.67 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045493986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.554 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds