Wall clock time and date at job start Tue Mar 31 2020 05:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46246 * 2 1 4 4 C 1.34780 * 120.00492 * 60.02445 * 3 2 1 5 5 O 1.21286 * 119.99235 * 0.02562 * 4 3 2 6 6 C 1.50686 * 120.00281 * 180.02562 * 4 3 2 7 7 H 1.08999 * 110.05791 * 301.40601 * 6 4 3 8 8 C 1.53882 * 110.02773 * 180.02562 * 6 4 3 9 9 C 1.54163 * 108.70510 * 193.52899 * 8 6 4 10 10 S 1.82911 * 105.08769 * 27.90900 * 9 8 6 11 11 O 1.42106 * 109.35468 * 111.27456 * 10 9 8 12 12 O 1.42101 * 109.35487 * 244.34242 * 10 9 8 13 13 C 1.55405 * 110.04828 * 62.66178 * 6 4 3 14 14 C 1.53041 * 109.44957 * 119.96734 * 2 1 3 15 15 C 1.53187 * 109.31080 * 181.37797 * 14 2 1 16 16 N 1.46927 * 108.77662 * 305.36357 * 15 14 2 17 17 C 1.36941 * 120.63021 * 233.63479 * 16 15 14 18 18 H 1.08008 * 119.99829 * 27.65726 * 17 16 15 19 19 C 1.38810 * 119.99852 * 207.65928 * 17 16 15 20 20 N 1.31615 * 120.00055 * 17.37008 * 19 17 16 21 21 Si 1.86806 * 119.99915 * 197.36981 * 19 17 16 22 22 H 1.48499 * 109.47013 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46826 * 119.99865 * 21 19 17 24 24 H 1.48500 * 109.47254 * 240.00061 * 21 19 17 25 25 C 1.46922 * 118.73844 * 53.60860 * 16 15 14 26 26 C 1.53046 * 109.45631 * 240.02916 * 2 1 3 27 27 H 1.09002 * 109.47091 * 59.99800 * 1 2 3 28 28 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46858 * 300.00221 * 1 2 3 30 30 H 0.97001 * 120.00146 * 240.03378 * 3 2 1 31 31 H 1.09000 * 109.64808 * 73.67796 * 8 6 4 32 32 H 1.08995 * 109.64701 * 313.38269 * 8 6 4 33 33 H 1.09000 * 110.31972 * 269.00725 * 9 8 6 34 34 H 1.08997 * 110.31973 * 146.81132 * 9 8 6 35 35 H 1.08998 * 110.75842 * 43.43821 * 13 6 4 36 36 H 1.09007 * 110.95114 * 279.89183 * 13 6 4 37 37 H 1.08998 * 109.49502 * 301.32923 * 14 2 1 38 38 H 1.08997 * 109.49799 * 61.42344 * 14 2 1 39 39 H 1.09004 * 109.58572 * 185.57671 * 15 14 2 40 40 H 1.09001 * 109.70747 * 65.21842 * 15 14 2 41 41 H 0.97006 * 120.00037 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.58257 * 186.60725 * 25 16 15 43 43 H 1.08998 * 109.70254 * 66.25196 * 25 16 15 44 44 H 1.09001 * 109.49697 * 298.57613 * 26 2 1 45 45 H 1.08988 * 109.49984 * 58.67648 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6929 2.2110 1.0110 5 8 0.9964 1.8139 1.9211 6 6 2.1945 3.6320 1.0107 7 1 3.2841 3.6437 0.9848 8 6 1.6897 4.3694 2.2634 9 6 1.9211 5.8817 2.0738 10 16 1.8641 6.1490 0.2652 11 8 0.6972 6.8899 -0.0647 12 8 3.1361 6.5941 -0.1854 13 6 1.6281 4.3966 -0.2179 14 6 2.0396 -0.7208 1.2502 15 6 3.5711 -0.6889 1.2644 16 7 4.0676 -1.2493 0.0002 17 6 4.9753 -2.2747 0.0004 18 1 5.0078 -2.9670 0.8288 19 6 5.8534 -2.4244 -1.0642 20 7 6.0601 -1.4228 -1.8926 21 14 6.7418 -4.0475 -1.3210 22 1 6.3384 -5.0058 -0.2607 23 1 6.3841 -4.6024 -2.6512 24 1 8.2085 -3.8248 -1.2556 25 6 3.5713 -0.6891 -1.2641 26 6 2.0398 -0.7209 -1.2501 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.5754 1.6988 -0.7277 31 1 2.2378 4.0217 3.1391 32 1 0.6257 4.1756 2.3989 33 1 2.8962 6.1677 2.4681 34 1 1.1316 6.4500 2.5655 35 1 0.5705 4.1731 -0.3581 36 1 2.1965 4.1632 -1.1183 37 1 1.6570 -0.2207 2.1398 38 1 1.6973 -1.7556 1.2384 39 1 3.9412 -1.2849 2.0987 40 1 3.9164 0.3397 1.3687 41 1 6.6735 -1.5275 -2.6368 42 1 3.9416 -1.2852 -2.0981 43 1 3.9145 0.3401 -1.3697 44 1 1.6976 -1.7557 -1.2383 45 1 1.6574 -0.2209 -2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045493986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:49 Heat of formation + Delta-G solvation = -111.694607 kcal Electronic energy + Delta-G solvation = -27886.575148 eV Core-core repulsion = 24030.770792 eV Total energy + Delta-G solvation = -3855.804356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.56865 -39.20797 -38.08481 -37.12845 -36.71429 -36.00102 -33.70610 -32.52160 -31.60282 -30.69981 -29.06667 -26.78991 -25.91739 -24.05604 -23.77108 -22.49462 -21.17870 -20.14570 -19.76916 -18.86082 -18.46423 -17.76395 -17.10934 -16.83835 -16.71397 -16.22114 -15.99982 -15.62249 -15.39234 -15.14392 -14.97224 -14.92679 -14.75217 -14.40650 -14.05869 -13.47306 -13.33347 -13.25342 -13.23997 -13.10547 -13.03470 -12.96420 -12.79655 -12.78869 -12.60402 -12.53141 -12.14036 -12.08755 -11.96203 -11.87429 -11.72942 -11.37833 -11.28411 -11.23234 -10.53771 -10.40667 -9.90473 -8.64835 -7.87436 -5.30553 -0.92022 1.45441 1.48920 1.50370 1.58017 1.72765 2.23765 2.51605 2.65338 3.05856 3.27698 3.38316 3.52457 3.62350 3.72506 3.82250 3.91632 4.02668 4.05764 4.15998 4.21701 4.49856 4.50510 4.65496 4.65973 4.75275 4.82053 4.87959 4.92504 4.93798 4.98246 5.00497 5.13655 5.18763 5.23616 5.32498 5.38895 5.50869 5.65152 5.71365 5.79386 6.40159 6.68234 7.17182 7.31959 7.88057 8.38576 9.18231 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.003291 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.926616 B = 8504.985583 C = 9168.710951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.186 3.814 3 N -0.706 5.706 4 C 0.530 3.470 5 O -0.559 6.559 6 C -0.116 4.116 7 H 0.133 0.867 8 C -0.096 4.096 9 C -0.566 4.566 10 S 2.403 3.597 11 O -0.976 6.976 12 O -0.974 6.974 13 C -0.576 4.576 14 C -0.131 4.131 15 C 0.151 3.849 16 N -0.606 5.606 17 C -0.263 4.263 18 H 0.059 0.941 19 C -0.043 4.043 20 N -0.928 5.928 21 Si 0.960 3.040 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.177 3.823 26 C -0.132 4.132 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.406 0.594 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.039 0.961 40 H 0.013 0.987 41 H 0.250 0.750 42 H 0.054 0.946 43 H 0.011 0.989 44 H 0.064 0.936 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.730 12.570 5.200 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.101 3.899 3 N -0.357 5.357 4 C 0.316 3.684 5 O -0.439 6.439 6 C -0.138 4.138 7 H 0.151 0.849 8 C -0.135 4.135 9 C -0.698 4.698 10 S 2.590 3.410 11 O -0.974 6.974 12 O -0.971 6.971 13 C -0.706 4.706 14 C -0.171 4.171 15 C 0.026 3.974 16 N -0.330 5.330 17 C -0.393 4.393 18 H 0.077 0.923 19 C -0.239 4.239 20 N -0.575 5.575 21 Si 0.789 3.211 22 H -0.196 1.196 23 H -0.216 1.216 24 H -0.221 1.221 25 C 0.051 3.949 26 C -0.172 4.172 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.242 0.758 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.083 0.917 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.045 13.128 5.144 18.544 hybrid contribution 1.171 -1.558 -0.283 1.969 sum -10.874 11.570 4.861 16.605 Atomic orbital electron populations 1.22118 0.93434 1.02566 1.02777 1.20169 0.93895 0.80627 0.95248 1.46129 1.52785 1.11551 1.25254 1.20258 0.79674 0.87106 0.81356 1.90632 1.39233 1.77536 1.36472 1.22173 1.04243 0.92697 0.94692 0.84928 1.21739 1.05038 0.89279 0.97436 1.30366 1.13963 1.04035 1.21467 1.08534 0.73626 0.78131 0.80706 1.93567 1.50498 1.69690 1.83608 1.93592 1.42586 1.80141 1.80770 1.30745 1.12363 1.21374 1.06084 1.22246 0.96447 0.99851 0.98556 1.20873 0.92840 0.95396 0.88300 1.44261 1.48181 1.39547 1.00996 1.19478 1.10202 1.03666 1.05991 0.92333 1.25634 0.98226 1.00076 0.99955 1.70142 1.38550 1.30417 1.18343 0.85322 0.77702 0.80536 0.77550 1.19606 1.21554 1.22058 1.20605 0.89690 0.95763 0.88824 1.22330 0.97825 1.00423 0.96600 0.91660 0.91674 0.91528 0.75758 0.87849 0.88529 0.82434 0.82001 0.82750 0.82298 0.90544 0.92371 0.94235 0.96887 0.94088 0.92774 0.97086 0.91679 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 8.40 71.98 0.60 -3.17 16 2 C 0.19 5.43 0.66 3.63 0.00 5.43 16 3 N -0.71 -17.93 4.05 -422.80 -1.71 -19.65 16 4 C 0.53 12.46 6.57 87.65 0.58 13.04 16 5 O -0.56 -15.92 12.03 -3.05 -0.04 -15.95 16 6 C -0.12 -1.81 2.96 -10.42 -0.03 -1.84 16 7 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 8 C -0.10 -1.20 5.25 31.29 0.16 -1.04 16 9 C -0.57 -4.93 7.26 72.38 0.53 -4.41 16 10 S 2.40 35.49 6.09 -56.49 -0.34 35.14 16 11 O -0.98 -21.58 18.15 -127.47 -2.31 -23.89 16 12 O -0.97 -22.22 18.15 -127.47 -2.31 -24.53 16 13 C -0.58 -7.16 6.65 72.81 0.48 -6.67 16 14 C -0.13 -4.45 4.67 30.67 0.14 -4.30 16 15 C 0.15 6.17 6.25 86.36 0.54 6.71 16 16 N -0.61 -28.77 2.99 -699.10 -2.09 -30.87 16 17 C -0.26 -14.10 9.58 84.03 0.81 -13.29 16 18 H 0.06 3.14 7.89 -2.91 -0.02 3.12 16 19 C -0.04 -2.32 4.91 84.86 0.42 -1.90 16 20 N -0.93 -52.22 11.19 21.65 0.24 -51.98 16 21 Si 0.96 43.80 29.59 68.60 2.03 45.83 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 25 C 0.18 7.60 5.03 86.36 0.43 8.04 16 26 C -0.13 -4.30 4.96 30.67 0.15 -4.15 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.79 6.17 -2.39 -0.01 1.78 16 30 H 0.41 9.61 7.27 -92.71 -0.67 8.93 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 1.26 7.68 -2.39 -0.02 1.24 16 33 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.15 1.62 8.10 -2.39 -0.02 1.60 16 36 H 0.16 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.08 2.57 6.20 -2.39 -0.01 2.56 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 1.65 7.93 -2.38 -0.02 1.64 16 40 H 0.01 0.54 7.74 -2.39 -0.02 0.52 16 41 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 42 H 0.05 2.73 6.03 -2.39 -0.01 2.71 16 43 H 0.01 0.48 6.94 -2.39 -0.02 0.47 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -75.28 358.41 -1.40 -76.69 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.32 Total: 16.77 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 4.82 Total: -7.57 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -3.56 Total: -102.49 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -4.66 Total: -64.38 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 35.49 SS G_CDS: -0.34 Total: 35.14 kcal Total: -75.28 -1.40 -76.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045493986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.009 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds