Wall clock time and date at job start Tue Mar 31 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46498 * 109.46510 * 2 1 4 4 C 1.34784 * 119.99326 * 60.03081 * 3 2 1 5 5 O 1.21275 * 120.00042 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99519 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.64118 * 59.57350 * 6 4 3 8 8 C 1.53872 * 109.64328 * 179.97438 * 6 4 3 9 9 C 1.55046 * 106.62271 * 167.03243 * 8 6 4 10 10 S 1.83293 * 102.74250 * 317.47584 * 9 8 6 11 11 O 1.42096 * 109.35427 * 136.70669 * 10 9 8 12 12 O 1.42106 * 109.34969 * 269.90817 * 10 9 8 13 13 C 1.54161 * 109.64699 * 299.27141 * 6 4 3 14 14 C 1.53044 * 109.44960 * 119.97468 * 2 1 3 15 15 C 1.53192 * 109.31348 * 181.37850 * 14 2 1 16 16 N 1.46926 * 108.77489 * 305.36210 * 15 14 2 17 17 C 1.36937 * 120.63034 * 233.59044 * 16 15 14 18 18 H 1.08007 * 119.99939 * 27.69199 * 17 16 15 19 19 C 1.38813 * 120.00061 * 207.69369 * 17 16 15 20 20 N 1.31612 * 120.00212 * 17.35620 * 19 17 16 21 21 Si 1.86800 * 119.99937 * 197.35502 * 19 17 16 22 22 H 1.48499 * 109.47083 * 90.00036 * 21 19 17 23 23 H 1.48495 * 109.47208 * 210.00089 * 21 19 17 24 24 H 1.48503 * 109.47223 * 330.00124 * 21 19 17 25 25 C 1.46930 * 118.74166 * 53.60529 * 16 15 14 26 26 C 1.53043 * 109.45836 * 240.02718 * 2 1 3 27 27 H 1.09002 * 109.47497 * 59.99439 * 1 2 3 28 28 H 1.08997 * 109.47646 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47051 * 299.99863 * 1 2 3 30 30 H 0.96999 * 120.00370 * 240.02695 * 3 2 1 31 31 H 1.09008 * 110.02880 * 47.74966 * 8 6 4 32 32 H 1.08996 * 110.03484 * 286.32700 * 8 6 4 33 33 H 1.09003 * 110.78825 * 75.83878 * 9 8 6 34 34 H 1.09003 * 110.79537 * 199.11137 * 9 8 6 35 35 H 1.08994 * 110.32413 * 331.14893 * 13 6 4 36 36 H 1.09006 * 110.31829 * 93.23864 * 13 6 4 37 37 H 1.09000 * 109.49065 * 301.32037 * 14 2 1 38 38 H 1.08995 * 109.50176 * 61.42022 * 14 2 1 39 39 H 1.09004 * 109.58747 * 185.57308 * 15 14 2 40 40 H 1.09002 * 109.70618 * 65.21514 * 15 14 2 41 41 H 0.96994 * 120.00353 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.58498 * 186.61095 * 25 16 15 43 43 H 1.08998 * 109.57890 * 66.18254 * 25 16 15 44 44 H 1.08996 * 109.50053 * 298.58326 * 26 2 1 45 45 H 1.09001 * 109.49494 * 58.68187 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6928 2.2108 1.0113 5 8 0.9965 1.8137 1.9213 6 6 2.1955 3.6316 1.0116 7 1 1.8398 4.1463 0.1190 8 6 1.6846 4.3607 2.2666 9 6 2.4938 5.6789 2.3740 10 16 4.1997 5.1397 1.9755 11 8 4.7997 6.0843 1.0998 12 8 4.8647 4.7586 3.1721 13 6 3.7370 3.6360 1.0297 14 6 2.0395 -0.7210 1.2501 15 6 3.5710 -0.6891 1.2644 16 7 4.0675 -1.2494 0.0002 17 6 4.9758 -2.2742 0.0002 18 1 5.0087 -2.9666 0.8285 19 6 5.8543 -2.4231 -1.0642 20 7 6.0603 -1.4213 -1.8925 21 14 6.7440 -4.0454 -1.3210 22 1 5.9270 -4.9251 -2.1949 23 1 8.0588 -3.7926 -1.9634 24 1 6.9536 -4.7082 -0.0087 25 6 3.5713 -0.6890 -1.2642 26 6 2.0397 -0.7209 -1.2500 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.5754 1.6987 -0.7277 31 1 1.8541 3.7457 3.1506 32 1 0.6224 4.5821 2.1635 33 1 2.1397 6.4105 1.6476 34 1 2.4422 6.0834 3.3848 35 1 4.1122 2.7438 1.5309 36 1 4.1273 3.6909 0.0134 37 1 1.6570 -0.2208 2.1398 38 1 1.6972 -1.7557 1.2383 39 1 3.9412 -1.2852 2.0986 40 1 3.9163 0.3395 1.3687 41 1 6.6744 -1.5252 -2.6361 42 1 3.9415 -1.2851 -2.0982 43 1 3.9145 0.3404 -1.3671 44 1 1.6974 -1.7557 -1.2383 45 1 1.6573 -0.2207 -2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045493989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:56 Heat of formation + Delta-G solvation = -85.847093 kcal Electronic energy + Delta-G solvation = -28177.756819 eV Core-core repulsion = 24323.073295 eV Total energy + Delta-G solvation = -3854.683524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46562 -37.92443 -37.19300 -36.21729 -35.78921 -34.48135 -32.21091 -31.10767 -30.04258 -29.80587 -27.48740 -26.03263 -24.16980 -23.01460 -22.32991 -21.03918 -20.08975 -19.05102 -18.73802 -17.68242 -17.12537 -16.78725 -16.31835 -15.82050 -15.12002 -14.96512 -14.85963 -14.40549 -14.18477 -13.97526 -13.76045 -13.47711 -13.26478 -13.17368 -12.70699 -12.58835 -12.35050 -12.32058 -12.23685 -12.16903 -11.83052 -11.71972 -11.45416 -11.37126 -11.27113 -11.01006 -10.99036 -10.77144 -10.57684 -10.41362 -10.33739 -9.92515 -9.84998 -9.69408 -9.20204 -8.74245 -8.51375 -6.72736 -5.85060 -3.26205 -0.17699 2.26542 2.68094 3.20476 3.34817 3.42413 3.42800 3.43405 3.83101 4.13560 4.23971 4.37187 4.45934 4.54632 4.62148 4.88427 5.18046 5.20130 5.27278 5.30552 5.37025 5.41266 5.46635 5.54929 5.62584 5.73113 5.91260 5.97691 6.11310 6.21692 6.25641 6.33190 6.45868 6.59094 6.61827 6.76487 6.87630 6.98237 7.21758 7.51031 7.73015 7.77269 8.35871 8.39351 9.16025 9.79213 10.35545 11.23653 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.004038 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.596106 B = 6931.935407 C = 8238.473978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 N -0.704 5.704 4 C 0.526 3.474 5 O -0.536 6.536 6 C -0.105 4.105 7 H 0.115 0.885 8 C -0.099 4.099 9 C -0.589 4.589 10 S 2.388 3.612 11 O -0.938 6.938 12 O -0.931 6.931 13 C -0.585 4.585 14 C -0.144 4.144 15 C 0.150 3.850 16 N -0.590 5.590 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.171 3.829 26 C -0.146 4.146 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.402 0.598 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.014 0.986 41 H 0.254 0.746 42 H 0.090 0.910 43 H 0.016 0.984 44 H 0.072 0.928 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 12.807 3.331 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.098 3.902 3 N -0.355 5.355 4 C 0.310 3.690 5 O -0.414 6.414 6 C -0.127 4.127 7 H 0.133 0.867 8 C -0.138 4.138 9 C -0.718 4.718 10 S 2.571 3.429 11 O -0.935 6.935 12 O -0.928 6.928 13 C -0.715 4.715 14 C -0.183 4.183 15 C 0.023 3.977 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.045 3.955 26 C -0.186 4.186 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.237 0.763 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.034 0.966 44 H 0.090 0.910 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.905 12.891 4.063 17.367 hybrid contribution 0.074 -1.031 -0.936 1.394 sum -10.831 11.860 3.127 16.363 Atomic orbital electron populations 1.22222 0.95334 1.02007 1.02268 1.20312 0.92630 0.79964 0.97335 1.46153 1.52482 1.12199 1.24633 1.19928 0.80330 0.86407 0.82326 1.90641 1.38293 1.76738 1.35702 1.21747 0.92509 0.96550 1.01902 0.86661 1.22024 1.02105 0.91612 0.98069 1.30655 1.22416 1.06493 1.12271 1.09206 0.78723 0.78296 0.76690 1.93618 1.74384 1.59118 1.66377 1.93644 1.71370 1.82823 1.44974 1.30651 1.02452 1.21835 1.16522 1.22407 0.98993 0.99766 0.97184 1.20848 0.90851 0.96039 0.89937 1.44036 1.48219 1.39684 0.99353 1.19216 1.09745 1.02973 1.06147 0.91679 1.25000 0.97171 0.97453 0.99923 1.70002 1.37878 1.28996 1.18041 0.86291 0.78789 0.83705 0.78012 1.21479 1.21782 1.20444 1.20754 0.86796 0.97060 0.90875 1.22534 1.01490 1.00073 0.94501 0.93364 0.92195 0.90889 0.76314 0.88196 0.87992 0.84455 0.84262 0.83532 0.83386 0.90809 0.91764 0.93033 0.96848 0.93644 0.89207 0.96650 0.90973 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.40 37.15 0.31 -1.90 16 2 C 0.18 2.82 0.66 -131.78 -0.09 2.74 16 3 N -0.70 -9.56 4.02 -47.57 -0.19 -9.75 16 4 C 0.53 6.72 6.42 -10.98 -0.07 6.65 16 5 O -0.54 -8.22 12.02 5.56 0.07 -8.15 16 6 C -0.10 -0.92 2.94 -90.71 -0.27 -1.19 16 7 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 8 C -0.10 -0.77 5.27 -25.20 -0.13 -0.90 16 9 C -0.59 -3.61 7.29 38.24 0.28 -3.33 16 10 S 2.39 23.01 6.14 -107.50 -0.66 22.35 16 11 O -0.94 -11.96 18.15 -57.71 -1.05 -13.01 16 12 O -0.93 -12.89 18.15 -57.71 -1.05 -13.94 16 13 C -0.59 -5.47 6.64 37.76 0.25 -5.22 16 14 C -0.14 -2.53 4.67 -26.61 -0.12 -2.65 16 15 C 0.15 3.07 6.25 -3.71 -0.02 3.05 16 16 N -0.59 -13.92 3.00 -172.31 -0.52 -14.43 16 17 C -0.25 -6.68 9.58 -15.06 -0.14 -6.82 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 19 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 20 N -0.90 -25.09 11.19 55.49 0.62 -24.47 16 21 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.17 3.67 5.04 -3.71 -0.02 3.65 16 26 C -0.15 -2.48 4.96 -26.61 -0.13 -2.61 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.07 6.17 -51.93 -0.32 0.75 16 30 H 0.40 5.05 7.20 -40.82 -0.29 4.76 16 31 H 0.10 0.90 7.72 -51.92 -0.40 0.50 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.15 1.63 7.88 -51.93 -0.41 1.22 16 36 H 0.15 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.30 6.20 -51.93 -0.32 0.98 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 40 H 0.01 0.28 7.74 -51.93 -0.40 -0.12 16 41 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 43 H 0.02 0.33 6.94 -51.93 -0.36 -0.03 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -35.00 358.04 -9.66 -44.66 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.01 Total: 3.64 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.24 Total: -8.54 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.09 Total: -48.65 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -2.03 Total: -35.10 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 16 Polarization: 23.01 SS G_CDS: -0.66 Total: 22.35 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.00 -9.66 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045493989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.184 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds