Wall clock time and date at job start Tue Mar 31 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46498 * 109.46510 * 2 1 4 4 C 1.34784 * 119.99326 * 60.03081 * 3 2 1 5 5 O 1.21275 * 120.00042 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99519 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.64118 * 59.57350 * 6 4 3 8 8 C 1.53872 * 109.64328 * 179.97438 * 6 4 3 9 9 C 1.55046 * 106.62271 * 167.03243 * 8 6 4 10 10 S 1.83293 * 102.74250 * 317.47584 * 9 8 6 11 11 O 1.42096 * 109.35427 * 136.70669 * 10 9 8 12 12 O 1.42106 * 109.34969 * 269.90817 * 10 9 8 13 13 C 1.54161 * 109.64699 * 299.27141 * 6 4 3 14 14 C 1.53044 * 109.44960 * 119.97468 * 2 1 3 15 15 C 1.53192 * 109.31348 * 181.37850 * 14 2 1 16 16 N 1.46926 * 108.77489 * 305.36210 * 15 14 2 17 17 C 1.36937 * 120.63034 * 233.59044 * 16 15 14 18 18 H 1.08007 * 119.99939 * 27.69199 * 17 16 15 19 19 C 1.38813 * 120.00061 * 207.69369 * 17 16 15 20 20 N 1.31612 * 120.00212 * 17.35620 * 19 17 16 21 21 Si 1.86800 * 119.99937 * 197.35502 * 19 17 16 22 22 H 1.48499 * 109.47083 * 90.00036 * 21 19 17 23 23 H 1.48495 * 109.47208 * 210.00089 * 21 19 17 24 24 H 1.48503 * 109.47223 * 330.00124 * 21 19 17 25 25 C 1.46930 * 118.74166 * 53.60529 * 16 15 14 26 26 C 1.53043 * 109.45836 * 240.02718 * 2 1 3 27 27 H 1.09002 * 109.47497 * 59.99439 * 1 2 3 28 28 H 1.08997 * 109.47646 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47051 * 299.99863 * 1 2 3 30 30 H 0.96999 * 120.00370 * 240.02695 * 3 2 1 31 31 H 1.09008 * 110.02880 * 47.74966 * 8 6 4 32 32 H 1.08996 * 110.03484 * 286.32700 * 8 6 4 33 33 H 1.09003 * 110.78825 * 75.83878 * 9 8 6 34 34 H 1.09003 * 110.79537 * 199.11137 * 9 8 6 35 35 H 1.08994 * 110.32413 * 331.14893 * 13 6 4 36 36 H 1.09006 * 110.31829 * 93.23864 * 13 6 4 37 37 H 1.09000 * 109.49065 * 301.32037 * 14 2 1 38 38 H 1.08995 * 109.50176 * 61.42022 * 14 2 1 39 39 H 1.09004 * 109.58747 * 185.57308 * 15 14 2 40 40 H 1.09002 * 109.70618 * 65.21514 * 15 14 2 41 41 H 0.96994 * 120.00353 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.58498 * 186.61095 * 25 16 15 43 43 H 1.08998 * 109.57890 * 66.18254 * 25 16 15 44 44 H 1.08996 * 109.50053 * 298.58326 * 26 2 1 45 45 H 1.09001 * 109.49494 * 58.68187 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6928 2.2108 1.0113 5 8 0.9965 1.8137 1.9213 6 6 2.1955 3.6316 1.0116 7 1 1.8398 4.1463 0.1190 8 6 1.6846 4.3607 2.2666 9 6 2.4938 5.6789 2.3740 10 16 4.1997 5.1397 1.9755 11 8 4.7997 6.0843 1.0998 12 8 4.8647 4.7586 3.1721 13 6 3.7370 3.6360 1.0297 14 6 2.0395 -0.7210 1.2501 15 6 3.5710 -0.6891 1.2644 16 7 4.0675 -1.2494 0.0002 17 6 4.9758 -2.2742 0.0002 18 1 5.0087 -2.9666 0.8285 19 6 5.8543 -2.4231 -1.0642 20 7 6.0603 -1.4213 -1.8925 21 14 6.7440 -4.0454 -1.3210 22 1 5.9270 -4.9251 -2.1949 23 1 8.0588 -3.7926 -1.9634 24 1 6.9536 -4.7082 -0.0087 25 6 3.5713 -0.6890 -1.2642 26 6 2.0397 -0.7209 -1.2500 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.5754 1.6987 -0.7277 31 1 1.8541 3.7457 3.1506 32 1 0.6224 4.5821 2.1635 33 1 2.1397 6.4105 1.6476 34 1 2.4422 6.0834 3.3848 35 1 4.1122 2.7438 1.5309 36 1 4.1273 3.6909 0.0134 37 1 1.6570 -0.2208 2.1398 38 1 1.6972 -1.7557 1.2383 39 1 3.9412 -1.2852 2.0986 40 1 3.9163 0.3395 1.3687 41 1 6.6744 -1.5252 -2.6361 42 1 3.9415 -1.2851 -2.0982 43 1 3.9145 0.3404 -1.3671 44 1 1.6974 -1.7557 -1.2383 45 1 1.6573 -0.2207 -2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045493989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:54 Heat of formation + Delta-G solvation = -112.010544 kcal Electronic energy + Delta-G solvation = -28178.891352 eV Core-core repulsion = 24323.073295 eV Total energy + Delta-G solvation = -3855.818056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.58416 -39.20667 -38.09590 -37.13186 -36.71977 -36.00137 -33.70771 -32.54142 -31.60580 -30.66992 -29.05923 -26.79544 -25.92056 -24.05124 -23.75838 -22.50759 -21.13112 -20.15945 -19.79229 -18.84515 -18.41146 -17.80945 -17.23271 -16.85549 -16.66206 -16.23819 -16.01441 -15.67700 -15.29687 -15.19540 -14.96932 -14.89528 -14.71057 -14.40931 -14.01116 -13.44456 -13.36632 -13.25731 -13.19233 -13.10902 -13.05181 -13.01299 -12.86060 -12.77491 -12.60973 -12.51305 -12.16974 -12.16017 -11.98905 -11.80085 -11.75633 -11.34309 -11.29013 -11.23138 -10.54291 -10.38824 -9.89900 -8.65884 -7.88623 -5.31696 -0.92601 1.45622 1.47532 1.50062 1.55364 1.75317 2.24217 2.50537 2.67369 3.05662 3.26282 3.40547 3.55066 3.65586 3.70873 3.78012 3.90950 4.03571 4.07144 4.16456 4.25315 4.48541 4.55475 4.61240 4.67397 4.75838 4.79890 4.87414 4.92527 4.93169 4.98519 5.00283 5.13538 5.18086 5.23232 5.31037 5.39279 5.50267 5.63957 5.71637 5.79103 6.39007 6.69845 7.16198 7.33876 7.86699 8.37307 9.16894 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.004038 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.596106 B = 6931.935407 C = 8238.473978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.186 3.814 3 N -0.706 5.706 4 C 0.522 3.478 5 O -0.562 6.562 6 C -0.099 4.099 7 H 0.157 0.843 8 C -0.102 4.102 9 C -0.549 4.549 10 S 2.388 3.612 11 O -0.973 6.973 12 O -0.984 6.984 13 C -0.585 4.585 14 C -0.132 4.132 15 C 0.150 3.850 16 N -0.605 5.605 17 C -0.264 4.264 18 H 0.057 0.943 19 C -0.042 4.042 20 N -0.928 5.928 21 Si 0.960 3.040 22 H -0.284 1.284 23 H -0.295 1.295 24 H -0.275 1.275 25 C 0.177 3.823 26 C -0.132 4.132 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.407 0.593 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.173 0.827 34 H 0.160 0.840 35 H 0.123 0.877 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.036 0.964 40 H 0.012 0.988 41 H 0.250 0.750 42 H 0.054 0.946 43 H 0.012 0.988 44 H 0.064 0.936 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.819 14.196 2.815 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.100 3.900 3 N -0.357 5.357 4 C 0.308 3.692 5 O -0.441 6.441 6 C -0.121 4.121 7 H 0.175 0.825 8 C -0.141 4.141 9 C -0.682 4.682 10 S 2.576 3.424 11 O -0.970 6.970 12 O -0.981 6.981 13 C -0.715 4.715 14 C -0.172 4.172 15 C 0.024 3.976 16 N -0.329 5.329 17 C -0.395 4.395 18 H 0.075 0.925 19 C -0.238 4.238 20 N -0.574 5.574 21 Si 0.789 3.211 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.200 1.200 25 C 0.051 3.949 26 C -0.171 4.171 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.243 0.757 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.191 0.809 34 H 0.178 0.822 35 H 0.141 0.859 36 H 0.179 0.821 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.030 0.970 44 H 0.082 0.918 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.244 14.287 3.552 19.803 hybrid contribution 0.773 -1.459 -0.721 1.801 sum -12.472 12.828 2.831 18.114 Atomic orbital electron populations 1.22102 0.93285 1.02520 1.02831 1.20157 0.93997 0.80737 0.95067 1.46134 1.52742 1.11510 1.25359 1.20547 0.79591 0.87677 0.81337 1.90632 1.39497 1.77560 1.36398 1.21872 0.91486 0.94313 1.04459 0.82517 1.22097 1.03467 0.91772 0.96804 1.30454 1.16735 1.06491 1.14569 1.08989 0.80443 0.77687 0.75310 1.93566 1.76657 1.59802 1.66994 1.93574 1.74250 1.83558 1.46726 1.30588 1.03318 1.20589 1.16970 1.22257 0.96330 0.99908 0.98729 1.20888 0.92983 0.95336 0.88369 1.44245 1.48142 1.39542 1.00946 1.19441 1.10311 1.03710 1.06014 0.92502 1.25626 0.98158 1.00081 0.99938 1.70124 1.38529 1.30369 1.18353 0.85373 0.77440 0.80429 0.77828 1.21058 1.22136 1.20019 1.20627 0.89746 0.95790 0.88725 1.22330 0.97778 1.00401 0.96631 0.91477 0.91780 0.91555 0.75685 0.89873 0.85725 0.80896 0.82240 0.85892 0.82082 0.90690 0.92370 0.94506 0.96963 0.94043 0.92719 0.96975 0.91763 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 8.40 71.98 0.60 -3.11 16 2 C 0.19 5.46 0.66 3.63 0.00 5.46 16 3 N -0.71 -17.86 4.02 -422.80 -1.70 -19.56 16 4 C 0.52 12.25 6.42 87.66 0.56 12.81 16 5 O -0.56 -16.21 12.02 -3.01 -0.04 -16.25 16 6 C -0.10 -1.45 2.94 -10.85 -0.03 -1.49 16 7 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 8 C -0.10 -1.23 5.27 31.59 0.17 -1.07 16 9 C -0.55 -4.62 7.29 72.68 0.53 -4.09 16 10 S 2.39 44.20 6.14 -56.49 -0.35 43.85 16 11 O -0.97 -24.20 18.15 -127.49 -2.31 -26.52 16 12 O -0.98 -28.07 18.15 -127.49 -2.31 -30.39 16 13 C -0.58 -10.39 6.64 72.38 0.48 -9.91 16 14 C -0.13 -4.61 4.67 30.67 0.14 -4.47 16 15 C 0.15 6.29 6.25 86.36 0.54 6.83 16 16 N -0.61 -29.11 3.00 -699.07 -2.09 -31.20 16 17 C -0.26 -14.38 9.58 84.03 0.81 -13.57 16 18 H 0.06 3.11 7.89 -2.91 -0.02 3.09 16 19 C -0.04 -2.29 4.91 84.86 0.42 -1.87 16 20 N -0.93 -52.50 11.19 21.65 0.24 -52.26 16 21 Si 0.96 44.37 29.59 68.60 2.03 46.40 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 C 0.18 7.62 5.04 86.36 0.43 8.05 16 26 C -0.13 -4.29 4.96 30.67 0.15 -4.14 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.78 6.17 -2.39 -0.01 1.77 16 30 H 0.41 9.45 7.20 -92.71 -0.67 8.79 16 31 H 0.08 1.34 7.72 -2.38 -0.02 1.32 16 32 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.17 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.12 2.84 7.88 -2.39 -0.02 2.82 16 36 H 0.16 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.07 2.61 6.20 -2.39 -0.01 2.60 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.04 1.60 7.93 -2.39 -0.02 1.59 16 40 H 0.01 0.52 7.74 -2.39 -0.02 0.50 16 41 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 42 H 0.05 2.76 6.04 -2.39 -0.01 2.74 16 43 H 0.01 0.53 6.94 -2.39 -0.02 0.51 16 44 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -78.07 358.04 -1.39 -79.46 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.33 Total: 17.02 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.81 Total: -10.56 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -3.55 Total: -103.02 kcal Atomic # 8 Polarization: -68.49 SS G_CDS: -4.66 Total: -73.16 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 44.20 SS G_CDS: -0.35 Total: 43.85 kcal Total: -78.07 -1.39 -79.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045493989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.546 kcal (2) G-P(sol) polarization free energy of solvation -78.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds