Wall clock time and date at job start Tue Mar 31 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.46169 * 2 1 4 4 C 1.34771 * 120.00042 * 60.02863 * 3 2 1 5 5 O 1.21287 * 120.00099 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00254 * 180.02562 * 4 3 2 7 7 H 1.09004 * 110.28287 * 327.11095 * 6 4 3 8 8 C 1.54160 * 110.32106 * 89.33268 * 6 4 3 9 9 C 1.53878 * 108.70552 * 146.81473 * 8 6 4 10 10 C 1.55408 * 106.73845 * 312.91186 * 9 8 6 11 11 S 1.82915 * 110.32068 * 205.00053 * 6 4 3 12 12 O 1.42096 * 109.35582 * 352.36823 * 11 6 4 13 13 O 1.42102 * 109.35264 * 125.44096 * 11 6 4 14 14 C 1.53040 * 109.45064 * 119.96903 * 2 1 3 15 15 C 1.53192 * 109.31442 * 181.37801 * 14 2 1 16 16 N 1.46924 * 108.77593 * 305.36382 * 15 14 2 17 17 C 1.36940 * 120.63008 * 233.59210 * 16 15 14 18 18 H 1.08000 * 119.99910 * 27.68444 * 17 16 15 19 19 C 1.38810 * 119.99751 * 207.69644 * 17 16 15 20 20 N 1.31619 * 120.00338 * 17.35097 * 19 17 16 21 21 Si 1.86804 * 119.99993 * 197.35259 * 19 17 16 22 22 H 1.48496 * 109.47008 * 89.99595 * 21 19 17 23 23 H 1.48495 * 109.47206 * 210.00049 * 21 19 17 24 24 H 1.48505 * 109.46850 * 329.99774 * 21 19 17 25 25 C 1.46922 * 118.73847 * 53.60457 * 16 15 14 26 26 C 1.53044 * 109.46047 * 240.02626 * 2 1 3 27 27 H 1.09001 * 109.47352 * 60.00047 * 1 2 3 28 28 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47217 * 300.00234 * 1 2 3 30 30 H 0.97004 * 120.00075 * 240.02913 * 3 2 1 31 31 H 1.09000 * 109.64836 * 266.66717 * 8 6 4 32 32 H 1.09000 * 109.64310 * 27.09615 * 8 6 4 33 33 H 1.09000 * 110.02903 * 72.11228 * 9 8 6 34 34 H 1.09001 * 110.02710 * 193.48514 * 9 8 6 35 35 H 1.09002 * 110.75942 * 284.07371 * 10 9 8 36 36 H 1.09002 * 110.95704 * 160.52074 * 10 9 8 37 37 H 1.09004 * 109.49640 * 301.32672 * 14 2 1 38 38 H 1.08994 * 109.50237 * 61.42468 * 14 2 1 39 39 H 1.08996 * 109.58856 * 185.57479 * 15 14 2 40 40 H 1.09007 * 109.58834 * 65.15254 * 15 14 2 41 41 H 0.96998 * 120.00251 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.58664 * 186.60913 * 25 16 15 43 43 H 1.09002 * 109.58575 * 66.18265 * 25 16 15 44 44 H 1.08999 * 109.49583 * 298.57916 * 26 2 1 45 45 H 1.09000 * 109.49609 * 58.67799 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6928 2.2109 1.0111 5 8 0.9956 1.8141 1.9208 6 6 2.1944 3.6320 1.0108 7 1 3.1780 3.6854 0.5442 8 6 1.1995 4.5508 0.2743 9 6 1.2222 5.9376 0.9406 10 6 1.1319 5.6992 2.4736 11 16 2.2661 4.2806 2.7196 12 8 1.6650 3.3449 3.6041 13 8 3.5754 4.7650 2.9848 14 6 2.0395 -0.7209 1.2501 15 6 3.5710 -0.6890 1.2645 16 7 4.0676 -1.2493 0.0003 17 6 4.9758 -2.2742 0.0004 18 1 5.0088 -2.9664 0.8287 19 6 5.8543 -2.4231 -1.0640 20 7 6.0604 -1.4213 -1.8924 21 14 6.7442 -4.0454 -1.3207 22 1 5.9272 -4.9251 -2.1946 23 1 8.0589 -3.7926 -1.9631 24 1 6.9538 -4.7080 -0.0083 25 6 3.5713 -0.6891 -1.2640 26 6 2.0398 -0.7209 -1.2500 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.5753 1.6988 -0.7277 31 1 1.4906 4.6421 -0.7721 32 1 0.1956 4.1312 0.3400 33 1 2.1523 6.4524 0.6995 34 1 0.3706 6.5281 0.6028 35 1 0.1148 5.4363 2.7644 36 1 1.4795 6.5727 3.0252 37 1 1.6569 -0.2207 2.1399 38 1 1.6973 -1.7556 1.2384 39 1 3.9412 -1.2849 2.0986 40 1 3.9142 0.3405 1.3676 41 1 6.6739 -1.5254 -2.6364 42 1 3.9415 -1.2852 -2.0981 43 1 3.9144 0.3404 -1.3671 44 1 1.6975 -1.7557 -1.2382 45 1 1.6574 -0.2208 -2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045645037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:40 Heat of formation + Delta-G solvation = -78.430253 kcal Electronic energy + Delta-G solvation = -28353.992449 eV Core-core repulsion = 24499.630543 eV Total energy + Delta-G solvation = -3854.361906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30843 -37.75327 -37.06279 -36.30971 -35.82152 -34.43562 -32.23713 -31.13271 -30.09443 -29.74196 -27.44356 -25.98986 -24.10296 -22.37601 -22.12616 -21.49461 -20.53163 -18.86889 -18.72141 -17.63698 -17.11669 -16.67318 -16.35706 -15.46032 -15.09772 -14.89939 -14.81394 -14.36860 -14.13420 -14.00283 -13.82063 -13.43549 -13.21645 -13.10831 -12.87774 -12.51581 -12.46880 -12.19580 -12.08507 -11.94739 -11.78918 -11.66682 -11.45770 -11.32099 -11.21374 -10.94540 -10.85752 -10.73738 -10.46881 -10.36486 -10.29043 -9.88426 -9.84271 -9.64749 -9.19221 -8.69370 -8.47732 -6.68405 -5.81277 -3.22240 -0.14161 2.38608 2.64787 3.14349 3.37278 3.44458 3.45929 3.51619 3.90326 4.13057 4.28098 4.36088 4.48667 4.53129 4.63334 4.89031 5.12115 5.21083 5.27186 5.34235 5.35818 5.42445 5.46047 5.50116 5.55580 5.59704 5.95617 6.03112 6.16311 6.25864 6.31245 6.39270 6.49900 6.66382 6.67953 6.83168 6.94050 7.03610 7.25955 7.54596 7.73257 7.79874 8.35749 8.43235 9.19937 9.83208 10.39960 11.27474 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.003633 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.510626 B = 7706.062383 C = 8101.938432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 N -0.698 5.698 4 C 0.534 3.466 5 O -0.503 6.503 6 C -0.601 4.601 7 H 0.158 0.842 8 C -0.099 4.099 9 C -0.119 4.119 10 C -0.594 4.594 11 S 2.407 3.593 12 O -0.892 6.892 13 O -0.934 6.934 14 C -0.147 4.147 15 C 0.148 3.852 16 N -0.591 5.591 17 C -0.250 4.250 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.905 5.905 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.171 3.829 26 C -0.145 4.145 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.402 0.598 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.013 0.987 41 H 0.253 0.747 42 H 0.090 0.910 43 H 0.015 0.985 44 H 0.072 0.928 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.868 15.467 1.404 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.098 3.902 3 N -0.350 5.350 4 C 0.316 3.684 5 O -0.379 6.379 6 C -0.710 4.710 7 H 0.176 0.824 8 C -0.138 4.138 9 C -0.157 4.157 10 C -0.723 4.723 11 S 2.585 3.415 12 O -0.889 6.889 13 O -0.931 6.931 14 C -0.186 4.186 15 C 0.022 3.978 16 N -0.314 5.314 17 C -0.379 4.379 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.550 5.550 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.045 3.955 26 C -0.185 4.185 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.237 0.763 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.033 0.967 44 H 0.091 0.909 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.738 14.819 2.708 19.728 hybrid contribution 0.540 -0.294 -1.469 1.592 sum -12.199 14.525 1.239 19.009 Atomic orbital electron populations 1.22231 0.95247 1.02117 1.02329 1.20344 0.92726 0.79693 0.97444 1.46102 1.52547 1.12070 1.24248 1.18985 0.81535 0.84551 0.83320 1.90863 1.36852 1.75840 1.34309 1.30805 1.09410 1.03534 1.27266 0.82405 1.21865 0.98708 0.91975 1.01253 1.22271 1.05405 0.97622 0.90445 1.30773 1.17275 1.19674 1.04593 1.08944 0.76960 0.78115 0.77486 1.93706 1.77415 1.58891 1.58852 1.93632 1.35972 1.80767 1.82700 1.22438 0.98985 0.99889 0.97335 1.20860 0.90928 0.96093 0.89916 1.44052 1.48227 1.39685 0.99393 1.19238 1.09663 1.02910 1.06112 0.91623 1.25005 0.97191 0.97473 0.99978 1.70016 1.37977 1.28991 1.18041 0.86281 0.78754 0.83708 0.78003 1.21497 1.21815 1.20434 1.20754 0.86829 0.97051 0.90878 1.22528 1.01472 1.00076 0.94422 0.93351 0.92084 0.90735 0.76298 0.88340 0.89278 0.89282 0.88242 0.84231 0.84529 0.90449 0.91600 0.92863 0.96888 0.93707 0.89180 0.96702 0.90887 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 8.40 37.15 0.31 -2.02 16 2 C 0.18 3.01 0.66 -131.78 -0.09 2.92 16 3 N -0.70 -10.36 4.10 -47.57 -0.19 -10.56 16 4 C 0.53 7.78 6.27 -10.99 -0.07 7.71 16 5 O -0.50 -8.80 10.61 -17.92 -0.19 -8.99 16 6 C -0.60 -6.32 3.60 -27.28 -0.10 -6.42 16 7 H 0.16 1.43 8.14 -51.93 -0.42 1.00 16 8 C -0.10 -0.68 5.93 -25.67 -0.15 -0.83 16 9 C -0.12 -0.62 6.48 -25.00 -0.16 -0.78 16 10 C -0.59 -3.96 7.34 38.44 0.28 -3.67 16 11 S 2.41 28.25 5.90 -107.50 -0.63 27.61 16 12 O -0.89 -14.50 15.52 -66.94 -1.04 -15.54 16 13 O -0.93 -13.71 18.15 -57.73 -1.05 -14.76 16 14 C -0.15 -2.77 4.67 -26.61 -0.12 -2.90 16 15 C 0.15 3.26 6.26 -3.71 -0.02 3.24 16 16 N -0.59 -14.51 2.99 -172.32 -0.52 -15.03 16 17 C -0.25 -6.81 9.59 -15.06 -0.14 -6.96 16 18 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 19 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 20 N -0.91 -25.58 11.19 55.49 0.62 -24.96 16 21 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.17 3.79 5.04 -3.72 -0.02 3.77 16 26 C -0.15 -2.55 4.96 -26.61 -0.13 -2.68 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.16 6.17 -51.93 -0.32 0.84 16 30 H 0.40 5.46 7.27 -40.82 -0.30 5.16 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.62 7.85 -51.93 -0.41 0.21 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.50 6.20 -51.93 -0.32 1.18 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 40 H 0.01 0.30 7.74 -51.92 -0.40 -0.11 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.09 2.28 6.04 -51.93 -0.31 1.96 16 43 H 0.02 0.33 6.94 -51.93 -0.36 -0.03 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 355.35 15.07 5.35 5.35 Total: -1.00 -35.74 355.35 -10.21 -45.95 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.03 Total: 3.02 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.50 Total: -8.65 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.09 Total: -50.55 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -2.28 Total: -39.30 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Atomic # 16 Polarization: 28.25 SS G_CDS: -0.63 Total: 27.61 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.74 -10.21 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045645037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.480 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds