Wall clock time and date at job start Tue Mar 31 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.46169 * 2 1 4 4 C 1.34771 * 120.00042 * 60.02863 * 3 2 1 5 5 O 1.21287 * 120.00099 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00254 * 180.02562 * 4 3 2 7 7 H 1.09004 * 110.28287 * 327.11095 * 6 4 3 8 8 C 1.54160 * 110.32106 * 89.33268 * 6 4 3 9 9 C 1.53878 * 108.70552 * 146.81473 * 8 6 4 10 10 C 1.55408 * 106.73845 * 312.91186 * 9 8 6 11 11 S 1.82915 * 110.32068 * 205.00053 * 6 4 3 12 12 O 1.42096 * 109.35582 * 352.36823 * 11 6 4 13 13 O 1.42102 * 109.35264 * 125.44096 * 11 6 4 14 14 C 1.53040 * 109.45064 * 119.96903 * 2 1 3 15 15 C 1.53192 * 109.31442 * 181.37801 * 14 2 1 16 16 N 1.46924 * 108.77593 * 305.36382 * 15 14 2 17 17 C 1.36940 * 120.63008 * 233.59210 * 16 15 14 18 18 H 1.08000 * 119.99910 * 27.68444 * 17 16 15 19 19 C 1.38810 * 119.99751 * 207.69644 * 17 16 15 20 20 N 1.31619 * 120.00338 * 17.35097 * 19 17 16 21 21 Si 1.86804 * 119.99993 * 197.35259 * 19 17 16 22 22 H 1.48496 * 109.47008 * 89.99595 * 21 19 17 23 23 H 1.48495 * 109.47206 * 210.00049 * 21 19 17 24 24 H 1.48505 * 109.46850 * 329.99774 * 21 19 17 25 25 C 1.46922 * 118.73847 * 53.60457 * 16 15 14 26 26 C 1.53044 * 109.46047 * 240.02626 * 2 1 3 27 27 H 1.09001 * 109.47352 * 60.00047 * 1 2 3 28 28 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47217 * 300.00234 * 1 2 3 30 30 H 0.97004 * 120.00075 * 240.02913 * 3 2 1 31 31 H 1.09000 * 109.64836 * 266.66717 * 8 6 4 32 32 H 1.09000 * 109.64310 * 27.09615 * 8 6 4 33 33 H 1.09000 * 110.02903 * 72.11228 * 9 8 6 34 34 H 1.09001 * 110.02710 * 193.48514 * 9 8 6 35 35 H 1.09002 * 110.75942 * 284.07371 * 10 9 8 36 36 H 1.09002 * 110.95704 * 160.52074 * 10 9 8 37 37 H 1.09004 * 109.49640 * 301.32672 * 14 2 1 38 38 H 1.08994 * 109.50237 * 61.42468 * 14 2 1 39 39 H 1.08996 * 109.58856 * 185.57479 * 15 14 2 40 40 H 1.09007 * 109.58834 * 65.15254 * 15 14 2 41 41 H 0.96998 * 120.00251 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.58664 * 186.60913 * 25 16 15 43 43 H 1.09002 * 109.58575 * 66.18265 * 25 16 15 44 44 H 1.08999 * 109.49583 * 298.57916 * 26 2 1 45 45 H 1.09000 * 109.49609 * 58.67799 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6928 2.2109 1.0111 5 8 0.9956 1.8141 1.9208 6 6 2.1944 3.6320 1.0108 7 1 3.1780 3.6854 0.5442 8 6 1.1995 4.5508 0.2743 9 6 1.2222 5.9376 0.9406 10 6 1.1319 5.6992 2.4736 11 16 2.2661 4.2806 2.7196 12 8 1.6650 3.3449 3.6041 13 8 3.5754 4.7650 2.9848 14 6 2.0395 -0.7209 1.2501 15 6 3.5710 -0.6890 1.2645 16 7 4.0676 -1.2493 0.0003 17 6 4.9758 -2.2742 0.0004 18 1 5.0088 -2.9664 0.8287 19 6 5.8543 -2.4231 -1.0640 20 7 6.0604 -1.4213 -1.8924 21 14 6.7442 -4.0454 -1.3207 22 1 5.9272 -4.9251 -2.1946 23 1 8.0589 -3.7926 -1.9631 24 1 6.9538 -4.7080 -0.0083 25 6 3.5713 -0.6891 -1.2640 26 6 2.0398 -0.7209 -1.2500 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.5753 1.6988 -0.7277 31 1 1.4906 4.6421 -0.7721 32 1 0.1956 4.1312 0.3400 33 1 2.1523 6.4524 0.6995 34 1 0.3706 6.5281 0.6028 35 1 0.1148 5.4363 2.7644 36 1 1.4795 6.5727 3.0252 37 1 1.6569 -0.2207 2.1399 38 1 1.6973 -1.7556 1.2384 39 1 3.9412 -1.2849 2.0986 40 1 3.9142 0.3405 1.3676 41 1 6.6739 -1.5254 -2.6364 42 1 3.9415 -1.2852 -2.0981 43 1 3.9144 0.3404 -1.3671 44 1 1.6975 -1.7557 -1.2382 45 1 1.6574 -0.2208 -2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045645037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:39 Heat of formation + Delta-G solvation = -104.670801 kcal Electronic energy + Delta-G solvation = -28355.130324 eV Core-core repulsion = 24499.630543 eV Total energy + Delta-G solvation = -3855.499781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56419 -39.14105 -38.03819 -37.18042 -36.73546 -36.08485 -33.76461 -32.67660 -31.66185 -30.76455 -29.08479 -26.66390 -25.93394 -23.99719 -23.14450 -22.50444 -21.94914 -20.20626 -19.80300 -18.85062 -18.54245 -17.75069 -17.24750 -16.86476 -16.48163 -16.26922 -15.97273 -15.62212 -15.37469 -15.18422 -14.96123 -14.91739 -14.75984 -14.43164 -14.06248 -13.59582 -13.35503 -13.22577 -13.16082 -13.09657 -12.96189 -12.94280 -12.87312 -12.75172 -12.61686 -12.52773 -12.17395 -12.01974 -11.95021 -11.78814 -11.61905 -11.35512 -11.32790 -11.18455 -10.57056 -10.50622 -9.96640 -8.68272 -7.89526 -5.33459 -0.98031 1.46094 1.47296 1.52014 1.55941 1.63043 2.06794 2.50073 2.71482 3.07023 3.25120 3.42344 3.54143 3.68425 3.74749 3.82844 3.88197 4.02424 4.09923 4.13370 4.24070 4.45338 4.59269 4.61026 4.70503 4.74352 4.79584 4.89595 4.91017 4.97040 5.00827 5.04585 5.13260 5.15292 5.19959 5.26371 5.37895 5.47707 5.62470 5.66401 5.75829 6.37722 6.56688 7.14700 7.22043 7.83902 8.35868 9.16292 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.003633 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.510626 B = 7706.062383 C = 8101.938432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.186 3.814 3 N -0.699 5.699 4 C 0.528 3.472 5 O -0.534 6.534 6 C -0.593 4.593 7 H 0.169 0.831 8 C -0.097 4.097 9 C -0.117 4.117 10 C -0.554 4.554 11 S 2.376 3.624 12 O -0.954 6.954 13 O -0.979 6.979 14 C -0.137 4.137 15 C 0.149 3.851 16 N -0.605 5.605 17 C -0.268 4.268 18 H 0.057 0.943 19 C -0.042 4.042 20 N -0.928 5.928 21 Si 0.964 3.036 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.276 1.276 25 C 0.176 3.824 26 C -0.130 4.130 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.408 0.592 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.004 0.996 41 H 0.251 0.749 42 H 0.058 0.942 43 H 0.010 0.990 44 H 0.067 0.933 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.800 17.438 -0.316 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.100 3.900 3 N -0.351 5.351 4 C 0.313 3.687 5 O -0.412 6.412 6 C -0.703 4.703 7 H 0.187 0.813 8 C -0.136 4.136 9 C -0.155 4.155 10 C -0.688 4.688 11 S 2.563 3.437 12 O -0.951 6.951 13 O -0.976 6.976 14 C -0.176 4.176 15 C 0.023 3.977 16 N -0.329 5.329 17 C -0.398 4.398 18 H 0.075 0.925 19 C -0.238 4.238 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.209 1.209 23 H -0.220 1.220 24 H -0.201 1.201 25 C 0.051 3.949 26 C -0.169 4.169 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.245 0.755 31 H 0.142 0.858 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.180 0.820 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.028 0.972 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.649 16.770 1.013 22.290 hybrid contribution 1.137 -0.829 -0.919 1.681 sum -13.512 15.941 0.094 20.897 Atomic orbital electron populations 1.22114 0.92995 1.02795 1.02939 1.20224 0.94284 0.80269 0.95222 1.46063 1.52748 1.11451 1.24801 1.19548 0.80860 0.85933 0.82404 1.90856 1.38296 1.76825 1.35188 1.30699 1.11169 1.01550 1.26900 0.81307 1.22047 0.97487 0.91817 1.02215 1.22460 1.07868 0.96875 0.88316 1.30549 1.15472 1.16027 1.06754 1.09452 0.77151 0.79446 0.77699 1.93631 1.77998 1.62123 1.61358 1.93568 1.39037 1.81325 1.83676 1.22292 0.96308 1.00233 0.98815 1.20867 0.93129 0.94966 0.88713 1.44266 1.48250 1.39554 1.00823 1.19467 1.10499 1.03658 1.06183 0.92482 1.25669 0.98033 1.00286 0.99806 1.70141 1.38535 1.30435 1.18311 0.85317 0.77428 0.80140 0.77833 1.20868 1.21951 1.20082 1.20651 0.89876 0.95734 0.88686 1.22322 0.97659 1.00532 0.96382 0.90983 0.91418 0.91810 0.75539 0.85817 0.89046 0.87690 0.84749 0.82539 0.81988 0.91162 0.91782 0.94346 0.97829 0.93944 0.92341 0.97200 0.91385 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 8.40 71.98 0.60 -3.43 16 2 C 0.19 5.92 0.66 3.63 0.00 5.93 16 3 N -0.70 -20.05 4.10 -422.81 -1.73 -21.79 16 4 C 0.53 15.13 6.27 87.66 0.55 15.68 16 5 O -0.53 -18.91 10.61 19.39 0.21 -18.70 16 6 C -0.59 -11.72 3.60 30.24 0.11 -11.61 16 7 H 0.17 2.89 8.14 -2.38 -0.02 2.87 16 8 C -0.10 -0.95 5.93 31.28 0.19 -0.76 16 9 C -0.12 -0.63 6.48 31.72 0.21 -0.42 16 10 C -0.55 -5.44 7.34 72.81 0.53 -4.90 16 11 S 2.38 55.90 5.90 -56.49 -0.33 55.57 16 12 O -0.95 -32.71 15.52 -118.66 -1.84 -34.56 16 13 O -0.98 -29.73 18.15 -127.47 -2.31 -32.05 16 14 C -0.14 -5.26 4.67 30.67 0.14 -5.12 16 15 C 0.15 6.81 6.26 86.36 0.54 7.35 16 16 N -0.61 -30.50 2.99 -699.11 -2.09 -32.59 16 17 C -0.27 -14.99 9.59 84.03 0.81 -14.19 16 18 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 19 C -0.04 -2.33 4.91 84.86 0.42 -1.91 16 20 N -0.93 -53.26 11.19 21.65 0.24 -53.02 16 21 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 25 C 0.18 7.86 5.04 86.36 0.43 8.29 16 26 C -0.13 -4.37 4.96 30.67 0.15 -4.22 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.89 6.17 -2.39 -0.01 1.88 16 30 H 0.41 10.55 7.27 -92.71 -0.67 9.88 16 31 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.92 7.85 -2.39 -0.02 0.90 16 33 H 0.10 0.33 8.14 -2.39 -0.02 0.32 16 34 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 2.82 6.20 -2.39 -0.01 2.81 16 38 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.04 1.81 7.93 -2.39 -0.02 1.79 16 40 H 0.00 0.18 7.74 -2.38 -0.02 0.16 16 41 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.06 2.99 6.04 -2.38 -0.01 2.98 16 43 H 0.01 0.45 6.94 -2.39 -0.02 0.43 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -82.01 355.35 -0.83 -82.84 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.32 Total: 16.67 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 4.68 Total: -9.30 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.58 Total: -107.39 kcal Atomic # 8 Polarization: -81.35 SS G_CDS: -3.95 Total: -85.30 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 55.90 SS G_CDS: -0.33 Total: 55.57 kcal Total: -82.01 -0.83 -82.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045645037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.834 kcal (2) G-P(sol) polarization free energy of solvation -82.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds