Wall clock time and date at job start Tue Mar 31 2020 05:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.44916 * 2 1 4 4 C 1.34779 * 119.99919 * 60.03200 * 3 2 1 5 5 O 1.21279 * 120.00096 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99476 * 179.97438 * 4 3 2 7 7 H 1.09000 * 110.28653 * 335.70274 * 6 4 3 8 8 C 1.54169 * 110.31622 * 213.58574 * 6 4 3 9 9 C 1.53874 * 108.70532 * 213.19316 * 8 6 4 10 10 C 1.55048 * 106.62536 * 47.18084 * 9 8 6 11 11 S 1.82919 * 110.31848 * 97.82110 * 6 4 3 12 12 O 1.42102 * 109.35312 * 234.42234 * 11 6 4 13 13 O 1.42105 * 109.35067 * 7.62298 * 11 6 4 14 14 C 1.53044 * 109.45605 * 240.03160 * 2 1 3 15 15 C 1.53196 * 109.30810 * 178.61485 * 14 2 1 16 16 N 1.46921 * 108.77580 * 54.63940 * 15 14 2 17 17 C 1.36938 * 120.63311 * 126.37026 * 16 15 14 18 18 H 1.07997 * 120.00111 * 207.68195 * 17 16 15 19 19 C 1.38811 * 119.99833 * 27.68388 * 17 16 15 20 20 N 1.31622 * 119.99967 * 17.36569 * 19 17 16 21 21 Si 1.86800 * 120.00071 * 197.35911 * 19 17 16 22 22 H 1.48501 * 109.46709 * 60.00545 * 21 19 17 23 23 H 1.48497 * 109.47232 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47317 * 300.00363 * 21 19 17 25 25 C 1.46925 * 118.73797 * 306.38481 * 16 15 14 26 26 C 1.53037 * 109.45805 * 119.96694 * 2 1 3 27 27 H 1.09003 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47360 * 299.96185 * 1 2 3 29 29 H 1.09000 * 109.47423 * 59.97194 * 1 2 3 30 30 H 0.97005 * 119.99632 * 240.03748 * 3 2 1 31 31 H 1.08997 * 109.64768 * 333.04444 * 8 6 4 32 32 H 1.09005 * 109.64554 * 93.47035 * 8 6 4 33 33 H 1.08996 * 110.02727 * 166.47562 * 9 8 6 34 34 H 1.09002 * 110.02595 * 287.84559 * 9 8 6 35 35 H 1.08997 * 110.78725 * 75.83331 * 10 9 8 36 36 H 1.08995 * 110.79195 * 199.10391 * 10 9 8 37 37 H 1.09000 * 109.49995 * 58.66715 * 14 2 1 38 38 H 1.08996 * 109.50406 * 298.56614 * 14 2 1 39 39 H 1.09002 * 109.58271 * 174.42487 * 15 14 2 40 40 H 1.09006 * 109.58458 * 294.70550 * 15 14 2 41 41 H 0.96998 * 119.99685 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.59031 * 173.39948 * 25 16 15 43 43 H 1.08998 * 109.59393 * 293.82926 * 25 16 15 44 44 H 1.09000 * 109.49811 * 61.43717 * 26 2 1 45 45 H 1.09000 * 109.50001 * 301.33520 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0178 1.3814 0.0000 4 6 1.6924 2.2109 1.0112 5 8 0.9961 1.8137 1.9213 6 6 2.1947 3.6317 1.0114 7 1 3.1033 3.7114 0.4145 8 6 2.4588 4.1059 2.4544 9 6 2.1487 5.6104 2.5439 10 6 0.7755 5.8220 1.8558 11 16 0.9086 4.7602 0.3644 12 8 1.4457 5.5198 -0.7098 13 8 -0.3040 4.0405 0.1884 14 6 2.0398 -0.7208 -1.2501 15 6 3.5713 -0.6887 -1.2643 16 7 4.0678 -1.2489 -0.0001 17 6 4.9757 -2.2741 -0.0001 18 1 5.0085 -2.9663 0.8282 19 6 5.8538 -2.4235 -1.0647 20 7 6.0602 -1.4217 -1.8931 21 14 6.7428 -4.0462 -1.3215 22 1 5.7473 -5.1294 -1.5230 23 1 7.6160 -3.9482 -2.5187 24 1 7.5714 -4.3511 -0.1275 25 6 3.5714 -0.6886 1.2642 26 6 2.0398 -0.7208 1.2501 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5132 0.8903 29 1 -0.3634 0.5143 -0.8897 30 1 2.5749 1.6989 -0.7278 31 1 1.8165 3.5577 3.1436 32 1 3.5039 3.9332 2.7114 33 1 2.0946 5.9189 3.5879 34 1 2.9187 6.1818 2.0256 35 1 -0.0363 5.4851 2.5005 36 1 0.6387 6.8672 1.5784 37 1 1.6572 -0.2208 -2.1399 38 1 1.6977 -1.7557 -1.2384 39 1 3.9416 -1.2846 -2.0985 40 1 3.9142 0.3407 -1.3699 41 1 6.6741 -1.5260 -2.6368 42 1 3.9417 -1.2845 2.0984 43 1 3.9142 0.3409 1.3673 44 1 1.6978 -1.7556 1.2382 45 1 1.6572 -0.2207 2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045645046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:44 Heat of formation + Delta-G solvation = -82.167974 kcal Electronic energy + Delta-G solvation = -28328.342855 eV Core-core repulsion = 24473.818870 eV Total energy + Delta-G solvation = -3854.523985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.33530 -37.80993 -37.28680 -36.36648 -35.93911 -34.44636 -32.32278 -31.14722 -30.12170 -29.77426 -27.41332 -25.99252 -24.09205 -22.43757 -22.16968 -21.25949 -20.56874 -19.05046 -18.78116 -17.72944 -17.28861 -16.77033 -16.57629 -15.65152 -15.00093 -14.87570 -14.76733 -14.43591 -14.19204 -14.11121 -13.82382 -13.44315 -13.19912 -13.14010 -12.82389 -12.56628 -12.44635 -12.32988 -12.24154 -12.14251 -11.79170 -11.63904 -11.35113 -11.29137 -11.22517 -10.95736 -10.94651 -10.72990 -10.56095 -10.40031 -10.31599 -9.91435 -9.88898 -9.67775 -9.24456 -8.73217 -8.48641 -6.69807 -5.82564 -3.23769 -0.33151 2.14963 2.73642 3.07656 3.34500 3.36597 3.42484 3.44054 3.81848 4.02862 4.22804 4.35028 4.47243 4.52849 4.64410 4.91580 5.11922 5.21143 5.29039 5.35077 5.41206 5.45319 5.51872 5.57054 5.61201 5.78120 6.02004 6.05405 6.20494 6.25981 6.31575 6.45226 6.51510 6.62622 6.72231 6.78453 6.90947 7.01289 7.25983 7.55251 7.70322 7.77401 8.30621 8.41769 9.18233 9.81795 10.38568 11.26059 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.003507 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.922346 B = 7982.749022 C = 8215.583828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.183 3.817 3 N -0.701 5.701 4 C 0.545 3.455 5 O -0.519 6.519 6 C -0.593 4.593 7 H 0.159 0.841 8 C -0.103 4.103 9 C -0.119 4.119 10 C -0.583 4.583 11 S 2.394 3.606 12 O -0.929 6.929 13 O -0.917 6.917 14 C -0.148 4.148 15 C 0.170 3.830 16 N -0.590 5.590 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.150 3.850 26 C -0.143 4.143 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.401 0.599 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.015 0.985 41 H 0.254 0.746 42 H 0.051 0.949 43 H 0.014 0.986 44 H 0.065 0.935 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 14.468 6.806 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.098 3.902 3 N -0.352 5.352 4 C 0.327 3.673 5 O -0.396 6.396 6 C -0.703 4.703 7 H 0.177 0.823 8 C -0.141 4.141 9 C -0.158 4.158 10 C -0.714 4.714 11 S 2.575 3.425 12 O -0.926 6.926 13 O -0.914 6.914 14 C -0.187 4.187 15 C 0.044 3.956 16 N -0.313 5.313 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.024 3.976 26 C -0.183 4.183 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.237 0.763 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.084 0.916 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.343 14.155 6.421 18.670 hybrid contribution 1.384 -0.615 0.050 1.515 sum -8.959 13.540 6.471 17.478 Atomic orbital electron populations 1.22247 0.94900 1.01976 1.02975 1.20373 0.92979 0.79323 0.97484 1.46152 1.52280 1.12478 1.24268 1.18797 0.80626 0.84808 0.83062 1.90630 1.37741 1.75721 1.35464 1.30663 1.19901 1.08989 1.10714 0.82305 1.21964 1.05936 0.94721 0.91525 1.22239 0.93284 0.96202 1.04040 1.30641 1.06117 1.14936 1.19669 1.09256 0.76897 0.78070 0.78304 1.93640 1.80005 1.69358 1.49553 1.93655 1.41223 1.71307 1.85259 1.22552 1.01412 1.00183 0.94569 1.20760 0.86849 0.97093 0.90865 1.44025 1.48254 1.39659 0.99381 1.19158 1.09818 1.03008 1.06170 0.91764 1.25005 0.97202 0.97441 0.99913 1.70006 1.37814 1.29069 1.18016 0.86374 0.79234 0.83874 0.77311 1.21040 1.21654 1.20938 1.20840 0.90862 0.96030 0.89881 1.22411 0.98983 0.99810 0.97116 0.92114 0.90596 0.92953 0.76323 0.87800 0.88412 0.88017 0.89359 0.84044 0.84406 0.92545 0.90745 0.89134 0.96664 0.93598 0.93073 0.96809 0.91598 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.40 37.16 0.31 -2.29 16 2 C 0.18 3.13 0.66 -131.78 -0.09 3.05 16 3 N -0.70 -11.08 4.10 -47.57 -0.19 -11.28 16 4 C 0.54 8.11 5.73 -10.99 -0.06 8.05 16 5 O -0.52 -8.74 12.03 5.56 0.07 -8.67 16 6 C -0.59 -6.37 3.60 -27.27 -0.10 -6.47 16 7 H 0.16 1.42 8.13 -51.93 -0.42 0.99 16 8 C -0.10 -0.86 5.90 -25.67 -0.15 -1.01 16 9 C -0.12 -0.68 6.48 -25.19 -0.16 -0.85 16 10 C -0.58 -3.79 7.32 38.24 0.28 -3.51 16 11 S 2.39 25.76 5.96 -107.50 -0.64 25.12 16 12 O -0.93 -12.25 18.15 -57.71 -1.05 -13.29 16 13 O -0.92 -13.41 17.29 -57.71 -1.00 -14.41 16 14 C -0.15 -2.68 4.96 -26.61 -0.13 -2.81 16 15 C 0.17 3.82 5.03 -3.71 -0.02 3.80 16 16 N -0.59 -14.30 2.99 -172.32 -0.52 -14.82 16 17 C -0.25 -6.79 9.59 -15.06 -0.14 -6.93 16 18 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 19 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 20 N -0.90 -25.44 11.19 55.49 0.62 -24.82 16 21 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.15 3.17 6.26 -3.71 -0.02 3.14 16 26 C -0.14 -2.64 4.67 -26.61 -0.12 -2.76 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.29 6.17 -51.93 -0.32 0.97 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.40 5.91 7.26 -40.82 -0.30 5.61 16 31 H 0.10 0.97 6.93 -51.93 -0.36 0.61 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.14 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.09 2.31 6.04 -51.93 -0.31 1.99 16 40 H 0.02 0.35 6.94 -51.93 -0.36 -0.01 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 43 H 0.01 0.30 7.74 -51.93 -0.40 -0.10 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.07 1.35 6.20 -51.93 -0.32 1.03 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -34.63 357.06 -9.84 -44.47 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.98 Total: 4.57 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.50 Total: -8.60 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.09 Total: -50.92 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -1.98 Total: -36.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 25.76 SS G_CDS: -0.64 Total: 25.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.63 -9.84 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045645046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.696 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds