Wall clock time and date at job start Tue Mar 31 2020 07:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47337 * 2 1 4 4 C 1.50697 * 109.46956 * 119.99680 * 2 1 3 5 5 O 1.21278 * 120.00148 * 100.00064 * 4 2 1 6 6 N 1.34782 * 120.00221 * 279.99827 * 4 2 1 7 7 C 1.44783 * 120.17748 * 0.02752 * 6 4 2 8 8 C 1.52358 * 111.73982 * 265.09180 * 7 6 4 9 9 C 1.51312 * 112.41666 * 284.34267 * 8 7 6 10 10 H 1.09004 * 111.31321 * 186.29751 * 9 8 7 11 11 C 1.54719 * 107.22450 * 308.33522 * 9 8 7 12 12 C 1.54238 * 104.37281 * 89.47023 * 11 9 8 13 13 C 1.51130 * 105.27853 * 11.32548 * 12 11 9 14 14 H 1.09004 * 106.47282 * 122.81592 * 13 12 11 15 15 C 1.49810 * 120.18015 * 179.97438 * 6 4 2 16 16 N 1.48063 * 109.76339 * 8.26094 * 13 12 11 17 17 C 1.36938 * 127.84193 * 155.02783 * 16 13 12 18 18 H 1.08001 * 119.99728 * 24.79455 * 17 16 13 19 19 C 1.38803 * 120.00337 * 204.79081 * 17 16 13 20 20 N 1.31620 * 119.99913 * 27.28345 * 19 17 16 21 21 Si 1.86804 * 120.00200 * 207.00889 * 19 17 16 22 22 H 1.48498 * 109.46960 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46983 * 120.00072 * 21 19 17 24 24 H 1.48496 * 109.47383 * 239.99923 * 21 19 17 25 25 S 1.81398 * 109.47295 * 239.99804 * 2 1 3 26 26 C 1.81406 * 101.92064 * 59.99876 * 25 2 1 27 27 O 1.42091 * 108.57984 * 174.48858 * 25 2 1 28 28 O 1.42104 * 108.57635 * 305.51523 * 25 2 1 29 29 H 1.09001 * 109.47603 * 300.00560 * 1 2 3 30 30 H 1.09001 * 109.47204 * 60.00138 * 1 2 3 31 31 H 1.09005 * 109.47337 * 180.02562 * 1 2 3 32 32 H 1.09000 * 108.93788 * 25.23175 * 7 6 4 33 33 H 1.09000 * 108.92912 * 143.91454 * 7 6 4 34 34 H 1.09004 * 108.31572 * 164.18405 * 8 7 6 35 35 H 1.09005 * 109.99375 * 45.64987 * 8 7 6 36 36 H 1.09000 * 110.45615 * 208.19078 * 11 9 8 37 37 H 1.08997 * 110.45384 * 330.62227 * 11 9 8 38 38 H 1.08995 * 110.28535 * 130.51910 * 12 11 9 39 39 H 1.09009 * 110.28087 * 252.61701 * 12 11 9 40 40 H 1.08998 * 109.54813 * 30.86098 * 15 6 4 41 41 H 1.08997 * 109.55088 * 270.57970 * 15 6 4 42 42 H 0.97002 * 120.00041 * 5.64137 * 20 19 17 43 43 H 1.08996 * 109.46693 * 60.00059 * 26 25 2 44 44 H 1.09000 * 109.46906 * 179.97438 * 26 25 2 45 45 H 1.09000 * 109.46934 * 299.99780 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4063 -1.8616 1.1559 6 7 2.0658 -0.0663 2.4140 7 6 1.6197 1.3079 2.5076 8 6 2.7799 2.2876 2.3838 9 6 3.6127 2.3581 3.6452 10 1 4.3680 3.1411 3.5780 11 6 2.6410 2.6116 4.8222 12 6 2.2317 1.2005 5.2914 13 6 3.1760 0.2560 4.5841 14 1 3.6797 -0.3177 5.3622 15 6 2.5638 -0.7688 3.6399 16 7 4.2319 1.0293 3.8917 17 6 5.4911 0.6130 3.5505 18 1 5.6921 -0.4386 3.4083 19 6 6.5090 1.5424 3.3874 20 7 6.4672 2.6853 4.0388 21 14 7.9422 1.1679 2.2493 22 1 7.7562 -0.1756 1.6447 23 1 8.0005 2.1904 1.1739 24 1 9.2089 1.1916 3.0240 25 16 2.1347 -0.8552 -1.4811 26 6 1.4229 0.1514 -2.8118 27 8 3.5495 -0.7331 -1.5284 28 8 1.5478 -2.1485 -1.5283 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.9087 1.5045 1.7052 33 1 1.1203 1.4531 3.4656 34 1 2.3721 3.2773 2.1780 35 1 3.4251 1.9983 1.5542 36 1 3.1467 3.1481 5.6250 37 1 1.7687 3.1700 4.4825 38 1 2.3443 1.1141 6.3721 39 1 1.2028 0.9889 4.9999 40 1 3.3194 -1.5021 3.3583 41 1 1.7330 -1.2710 4.1353 42 1 5.7698 2.8450 4.6939 43 1 1.7893 1.1746 -2.7291 44 1 1.7159 -0.2623 -3.7767 45 1 0.3360 0.1469 -2.7291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045803346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:26 Heat of formation + Delta-G solvation = -55.884124 kcal Electronic energy + Delta-G solvation = -29129.938206 eV Core-core repulsion = 25276.553974 eV Total energy + Delta-G solvation = -3853.384232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.41868 -38.54336 -36.93897 -35.92475 -34.89700 -33.60809 -32.75826 -32.18519 -29.63477 -29.42548 -27.44940 -26.12617 -25.07742 -23.74984 -22.35275 -20.35891 -19.41703 -19.00535 -18.50924 -17.69115 -17.29413 -16.67696 -16.09869 -15.90094 -15.44673 -15.18189 -14.85003 -14.41744 -13.92662 -13.71146 -13.70558 -13.48851 -13.40115 -13.20239 -12.97484 -12.59186 -12.29558 -12.23991 -12.08762 -11.96500 -11.89064 -11.82719 -11.55787 -11.36868 -11.28384 -11.06361 -10.67832 -10.61559 -10.45324 -10.21332 -10.10082 -10.01806 -9.83419 -9.50139 -9.44309 -8.52673 -8.24327 -6.94235 -6.11627 -3.24769 -0.14292 2.64478 2.72524 3.07274 3.55497 3.57835 3.75170 3.76275 3.92659 4.32985 4.40982 4.54454 4.58166 4.73705 4.89661 5.00926 5.05922 5.07988 5.17024 5.27830 5.31245 5.41189 5.42428 5.50357 5.56700 5.62995 5.77110 5.87586 5.93577 5.98033 6.05157 6.17883 6.26477 6.40132 6.47527 6.57595 6.72247 6.84346 6.98133 7.10753 7.65694 7.80009 8.26975 8.46727 8.94897 9.74324 10.37896 11.17795 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.005610 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.557023 B = 4990.033135 C = 6178.764454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.617 4.617 3 H 0.155 0.845 4 C 0.544 3.456 5 O -0.538 6.538 6 N -0.572 5.572 7 C 0.098 3.902 8 C -0.151 4.151 9 C 0.141 3.859 10 H 0.093 0.907 11 C -0.131 4.131 12 C -0.117 4.117 13 C 0.125 3.875 14 H 0.046 0.954 15 C 0.118 3.882 16 N -0.574 5.574 17 C -0.317 4.317 18 H 0.061 0.939 19 C -0.021 4.021 20 N -0.912 5.912 21 Si 1.062 2.938 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.294 1.294 25 S 2.447 3.553 26 C -0.665 4.665 27 O -0.920 6.920 28 O -0.917 6.917 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.268 0.732 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.890 1.438 -7.127 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.725 4.725 3 H 0.173 0.827 4 C 0.328 3.672 5 O -0.416 6.416 6 N -0.303 5.303 7 C -0.025 4.025 8 C -0.192 4.192 9 C 0.034 3.966 10 H 0.111 0.889 11 C -0.170 4.170 12 C -0.155 4.155 13 C 0.017 3.983 14 H 0.064 0.936 15 C -0.005 4.005 16 N -0.297 5.297 17 C -0.445 4.445 18 H 0.079 0.921 19 C -0.223 4.223 20 N -0.552 5.552 21 Si 0.892 3.108 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.221 1.221 25 S 2.623 3.377 26 C -0.813 4.813 27 O -0.918 6.918 28 O -0.914 6.914 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.603 0.657 -7.860 16.597 hybrid contribution -1.835 0.339 0.711 1.997 sum -16.438 0.995 -7.149 17.953 Atomic orbital electron populations 1.21654 0.88096 1.04979 1.04735 1.30689 1.08450 1.15849 1.17535 0.82742 1.18974 0.78581 0.86162 0.83472 1.90817 1.48897 1.16925 1.84982 1.47984 1.61723 1.12664 1.07949 1.21506 0.96678 0.81319 1.02994 1.22157 0.97405 0.97242 1.02376 1.21280 0.93009 0.92008 0.90347 0.88933 1.22690 0.98953 0.95908 0.99471 1.21818 0.98101 0.96075 0.99478 1.20654 0.91246 0.93499 0.92882 0.93568 1.22684 0.97903 0.95913 0.83984 1.44975 1.09702 1.09579 1.65406 1.19653 0.84262 0.94675 1.45916 0.92101 1.25720 0.99567 0.95700 1.01344 1.70749 1.33961 1.27285 1.23216 0.83573 0.75410 0.75560 0.76293 1.21409 1.21578 1.22098 1.07515 0.76138 0.76677 0.77337 1.30430 1.14083 1.16962 1.19859 1.93631 1.26396 1.86519 1.85206 1.93569 1.79298 1.33428 1.85142 0.89729 0.90344 0.89774 0.91391 0.89452 0.92484 0.91697 0.92030 0.92014 0.91755 0.91905 0.89661 0.92495 0.92036 0.85145 0.85019 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.64 37.16 0.32 -0.83 16 2 C -0.62 -7.82 2.25 -27.89 -0.06 -7.89 16 3 H 0.15 1.60 6.98 -51.92 -0.36 1.24 16 4 C 0.54 9.86 6.87 -10.98 -0.08 9.79 16 5 O -0.54 -11.94 15.31 -3.35 -0.05 -11.99 16 6 N -0.57 -9.92 2.85 -173.15 -0.49 -10.41 16 7 C 0.10 1.39 4.68 -5.29 -0.02 1.37 16 8 C -0.15 -2.57 5.00 -27.91 -0.14 -2.71 16 9 C 0.14 2.88 3.07 -66.69 -0.21 2.67 16 10 H 0.09 2.23 5.71 -51.93 -0.30 1.93 16 11 C -0.13 -2.13 6.01 -25.18 -0.15 -2.28 16 12 C -0.12 -1.79 5.81 -27.03 -0.16 -1.95 16 13 C 0.13 2.41 2.63 -68.42 -0.18 2.23 16 14 H 0.05 0.96 8.10 -51.93 -0.42 0.53 16 15 C 0.12 2.19 6.03 -2.60 -0.02 2.17 16 16 N -0.57 -13.51 2.45 -156.79 -0.38 -13.89 16 17 C -0.32 -8.81 10.11 -15.06 -0.15 -8.97 16 18 H 0.06 1.78 7.96 -52.49 -0.42 1.36 16 19 C -0.02 -0.60 5.18 -17.43 -0.09 -0.69 16 20 N -0.91 -26.59 12.45 55.49 0.69 -25.90 16 21 Si 1.06 26.34 30.00 -169.99 -5.10 21.24 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 S 2.45 33.68 4.32 -107.50 -0.46 33.21 16 26 C -0.66 -4.74 10.17 101.05 1.03 -3.72 16 27 O -0.92 -17.32 18.10 -57.83 -1.05 -18.37 16 28 O -0.92 -15.45 17.40 -62.66 -1.09 -16.54 16 29 H 0.08 0.64 6.45 -51.93 -0.33 0.30 16 30 H 0.08 0.35 6.56 -51.93 -0.34 0.01 16 31 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 32 H 0.07 0.73 4.56 -51.93 -0.24 0.49 16 33 H 0.09 1.13 3.93 -51.93 -0.20 0.93 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.82 7.40 -51.93 -0.38 0.43 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.81 6.16 -51.92 -0.32 0.49 16 40 H 0.08 1.85 7.53 -51.93 -0.39 1.46 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.27 7.75 6.72 -40.82 -0.27 7.48 16 43 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.13 0.82 8.14 -51.92 -0.42 0.40 16 45 H 0.13 0.56 6.87 -51.92 -0.36 0.21 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -38.53 350.57 -9.07 -47.60 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.51 Total: 0.58 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.19 Total: -50.20 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -2.19 Total: -46.90 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -5.10 Total: 21.24 kcal Atomic # 16 Polarization: 33.68 SS G_CDS: -0.46 Total: 33.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.53 -9.07 -47.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045803346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.286 kcal (2) G-P(sol) polarization free energy of solvation -38.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds