Wall clock time and date at job start Tue Mar 31 2020 07:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47209 * 2 1 4 4 C 1.50700 * 109.46772 * 239.99838 * 2 1 3 5 5 O 1.21277 * 120.00152 * 259.11756 * 4 2 1 6 6 N 1.34984 * 119.99882 * 79.39955 * 4 2 1 7 7 C 1.44695 * 120.07796 * 184.88244 * 6 4 2 8 8 C 1.51286 * 113.55078 * 267.42638 * 7 6 4 9 9 C 1.51098 * 114.59325 * 297.34658 * 8 7 6 10 10 H 1.09742 * 110.73867 * 177.50723 * 9 8 7 11 11 C 1.54164 * 108.53418 * 299.42218 * 9 8 7 12 12 C 1.54025 * 104.65564 * 91.78012 * 11 9 8 13 13 C 1.52101 * 105.49739 * 12.90939 * 12 11 9 14 14 H 1.09336 * 108.36928 * 122.07106 * 13 12 11 15 15 C 1.49321 * 119.97124 * 4.43546 * 6 4 2 16 16 N 1.47773 * 109.56426 * 4.09034 * 13 12 11 17 17 C 1.37118 * 127.12208 * 159.45952 * 16 13 12 18 18 H 1.08002 * 119.99517 * 173.22772 * 17 16 13 19 19 C 1.38813 * 120.00176 * 353.23294 * 17 16 13 20 20 N 1.31610 * 119.99901 * 5.05963 * 19 17 16 21 21 Si 1.86798 * 119.99914 * 185.06279 * 19 17 16 22 22 H 1.48502 * 109.47072 * 94.99267 * 21 19 17 23 23 H 1.48496 * 109.47146 * 214.99496 * 21 19 17 24 24 H 1.48496 * 109.47255 * 334.99394 * 21 19 17 25 25 S 1.81400 * 109.47228 * 120.00252 * 2 1 3 26 26 C 1.81408 * 101.91980 * 304.99826 * 25 2 1 27 27 O 1.42103 * 108.57966 * 59.48316 * 25 2 1 28 28 O 1.42103 * 108.57686 * 190.51405 * 25 2 1 29 29 H 1.08999 * 109.47391 * 65.36712 * 1 2 3 30 30 H 1.09003 * 109.46719 * 185.37035 * 1 2 3 31 31 H 1.08996 * 109.47099 * 305.36829 * 1 2 3 32 32 H 1.09444 * 108.33340 * 28.02174 * 7 6 4 33 33 H 1.08979 * 109.13065 * 145.26918 * 7 6 4 34 34 H 1.09247 * 108.80671 * 59.27123 * 8 7 6 35 35 H 1.09424 * 108.41789 * 176.08826 * 8 7 6 36 36 H 1.09334 * 110.59382 * 210.79217 * 11 9 8 37 37 H 1.09277 * 110.70115 * 332.58991 * 11 9 8 38 38 H 1.09054 * 110.62395 * 253.35211 * 12 11 9 39 39 H 1.09261 * 110.28001 * 131.84430 * 12 11 9 40 40 H 1.09084 * 109.54661 * 254.71085 * 15 6 4 41 41 H 1.09075 * 109.56353 * 14.58585 * 15 6 4 42 42 H 0.97002 * 120.00248 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.47081 * 60.00013 * 26 25 2 44 44 H 1.08994 * 109.47059 * 180.02562 * 26 25 2 45 45 H 1.09001 * 109.46788 * 300.00324 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.4213 -1.8565 -1.1527 6 7 2.0544 -0.0694 -2.4181 7 6 2.4359 -0.7806 -3.6191 8 6 3.9104 -0.6763 -3.9409 9 6 4.3947 0.7268 -4.2236 10 1 5.4769 0.7352 -4.4050 11 6 3.6289 1.2726 -5.4453 12 6 2.4068 1.9954 -4.8481 13 6 2.6938 2.1165 -3.3593 14 1 2.6673 3.1755 -3.0884 15 6 1.6753 1.3729 -2.4945 16 7 4.0475 1.5979 -3.0725 17 6 4.8234 1.8719 -1.9756 18 1 5.7540 1.3443 -1.8272 19 6 4.4127 2.8272 -1.0560 20 7 3.2337 3.3983 -1.1825 21 14 5.5335 3.3022 0.3608 22 1 6.3161 4.5086 -0.0101 23 1 4.7137 3.5945 1.5640 24 1 6.4619 2.1811 0.6550 25 16 2.1347 -0.8552 1.4811 26 6 1.2998 0.0576 2.8079 27 8 1.6408 -2.1875 1.4680 28 8 3.5343 -0.6350 1.5913 29 1 -0.3634 0.4283 -0.9341 30 1 -0.3633 -1.0232 0.0962 31 1 -0.3633 0.5948 0.8380 32 1 2.1829 -1.8374 -3.4884 33 1 1.8565 -0.3988 -4.4595 34 1 4.4831 -1.0829 -3.1041 35 1 4.1177 -1.2971 -4.8178 36 1 4.2514 1.9738 -6.0076 37 1 3.3115 0.4561 -6.0986 38 1 1.4980 1.4166 -5.0166 39 1 2.2990 2.9875 -5.2929 40 1 0.6825 1.4664 -2.9367 41 1 1.6648 1.8014 -1.4915 42 1 2.9469 4.0661 -0.5401 43 1 0.2203 -0.0210 2.6795 44 1 1.5829 -0.3635 3.7725 45 1 1.5950 1.1062 2.7689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045803347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:31 Heat of formation + Delta-G solvation = -59.378662 kcal Electronic energy + Delta-G solvation = -29796.261522 eV Core-core repulsion = 25942.725755 eV Total energy + Delta-G solvation = -3853.535767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.97400 -38.11012 -36.60310 -35.60915 -34.22438 -33.65292 -32.72756 -31.65225 -29.49010 -29.30995 -27.30621 -25.87648 -24.54835 -23.92839 -22.13386 -19.96538 -19.39881 -18.68119 -18.15693 -17.30801 -16.90814 -16.00311 -15.78829 -15.55668 -15.06374 -14.93836 -14.74663 -14.41711 -13.86707 -13.70017 -13.15757 -13.13685 -13.02200 -12.92038 -12.52975 -12.30082 -12.19388 -11.96821 -11.73347 -11.61661 -11.57512 -11.52888 -11.34615 -11.17870 -10.99281 -10.84913 -10.78896 -10.73300 -10.26462 -10.16139 -9.91185 -9.70266 -9.62633 -9.54388 -9.25707 -8.73381 -7.90352 -6.95894 -5.81507 -3.17695 0.21147 2.99462 3.07981 3.37659 3.43547 3.51848 3.53295 4.07788 4.28801 4.43826 4.72359 4.80235 4.87697 5.15371 5.22834 5.26330 5.32128 5.43215 5.48183 5.59965 5.60874 5.67936 5.70288 5.76613 5.83897 5.96419 6.02790 6.10940 6.14172 6.23066 6.30821 6.48057 6.57519 6.65293 6.68692 6.81711 7.01734 7.15352 7.28273 7.55822 7.66615 8.01096 8.17832 8.66391 9.10763 9.69065 10.39537 11.25665 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012012 B = 0.007257 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.491956 B = 3857.513517 C = 5085.226183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.611 4.611 3 H 0.173 0.827 4 C 0.553 3.447 5 O -0.553 6.553 6 N -0.566 5.566 7 C 0.131 3.869 8 C -0.147 4.147 9 C 0.153 3.847 10 H 0.058 0.942 11 C -0.126 4.126 12 C -0.129 4.129 13 C 0.147 3.853 14 H 0.117 0.883 15 C 0.104 3.896 16 N -0.580 5.580 17 C -0.194 4.194 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.901 3.099 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.276 1.276 25 S 2.443 3.557 26 C -0.666 4.666 27 O -0.924 6.924 28 O -0.923 6.923 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.037 0.963 41 H 0.111 0.889 42 H 0.251 0.749 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.785 -1.738 -0.981 9.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.721 4.721 3 H 0.190 0.810 4 C 0.338 3.662 5 O -0.433 6.433 6 N -0.296 5.296 7 C 0.008 3.992 8 C -0.188 4.188 9 C 0.046 3.954 10 H 0.076 0.924 11 C -0.164 4.164 12 C -0.167 4.167 13 C 0.040 3.960 14 H 0.134 0.866 15 C -0.019 4.019 16 N -0.302 5.302 17 C -0.322 4.322 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.583 5.583 21 Si 0.732 3.268 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.201 1.201 25 S 2.621 3.379 26 C -0.815 4.815 27 O -0.921 6.921 28 O -0.920 6.920 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.129 0.871 42 H 0.062 0.938 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.954 -2.883 -0.692 8.489 hybrid contribution 0.054 1.173 0.693 1.364 sum -7.900 -1.709 0.001 8.083 Atomic orbital electron populations 1.21581 0.88633 1.03835 1.05078 1.30596 1.07832 1.17187 1.16461 0.80971 1.18924 0.77985 0.85479 0.83793 1.90770 1.49541 1.17902 1.85119 1.47815 1.63909 1.11999 1.05849 1.20494 0.95665 0.96393 0.86683 1.21913 0.96618 0.99368 1.00856 1.21048 0.96858 0.89577 0.87937 0.92377 1.22494 0.97310 0.99198 0.97425 1.22210 0.97109 0.99474 0.97913 1.21254 0.84516 1.01448 0.88817 0.86609 1.23410 0.95863 0.77630 1.04958 1.44900 1.13726 1.52326 1.19239 1.19153 1.00909 1.14892 0.97220 0.90330 1.24624 0.97436 0.99186 0.99269 1.69689 1.18658 1.31636 1.38302 0.86191 0.80526 0.78524 0.81570 1.21780 1.21594 1.20148 1.07507 0.76322 0.76471 0.77624 1.30434 1.15026 1.16348 1.19687 1.93547 1.81899 1.31154 1.85461 1.93615 1.27247 1.86158 1.85013 0.89835 0.90527 0.90494 0.91662 0.91600 0.92183 0.92768 0.92434 0.92268 0.92702 0.92377 0.94494 0.87135 0.93811 0.85265 0.85366 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.67 37.16 0.32 -1.33 16 2 C -0.61 -10.52 2.35 -27.88 -0.07 -10.58 16 3 H 0.17 3.08 6.24 -51.93 -0.32 2.75 16 4 C 0.55 11.56 6.85 -10.89 -0.07 11.49 16 5 O -0.55 -13.21 14.97 -8.95 -0.13 -13.34 16 6 N -0.57 -11.08 2.55 -173.55 -0.44 -11.52 16 7 C 0.13 2.37 4.95 -5.87 -0.03 2.34 16 8 C -0.15 -2.72 5.02 -28.55 -0.14 -2.87 16 9 C 0.15 2.96 3.80 -67.19 -0.26 2.71 16 10 H 0.06 1.14 8.20 -51.51 -0.42 0.72 16 11 C -0.13 -2.01 6.03 -25.59 -0.15 -2.16 16 12 C -0.13 -2.12 5.74 -26.65 -0.15 -2.27 16 13 C 0.15 2.97 2.30 -67.74 -0.16 2.82 16 14 H 0.12 2.69 5.99 -51.74 -0.31 2.38 16 15 C 0.10 1.97 4.96 -2.52 -0.01 1.95 16 16 N -0.58 -13.20 2.34 -156.15 -0.37 -13.56 16 17 C -0.19 -5.03 10.35 -14.97 -0.16 -5.18 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 20 N -0.93 -22.94 8.60 55.49 0.48 -22.46 16 21 Si 0.90 21.51 29.56 -169.99 -5.02 16.48 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 S 2.44 42.69 4.44 -107.50 -0.48 42.21 16 26 C -0.67 -7.41 10.03 101.05 1.01 -6.40 16 27 O -0.92 -18.27 17.18 -64.17 -1.10 -19.37 16 28 O -0.92 -20.50 18.10 -57.83 -1.05 -21.55 16 29 H 0.08 1.00 7.48 -51.93 -0.39 0.61 16 30 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 31 H 0.08 0.67 6.72 -51.93 -0.35 0.32 16 32 H 0.06 1.19 7.37 -51.68 -0.38 0.81 16 33 H 0.07 1.03 5.74 -51.94 -0.30 0.74 16 34 H 0.06 1.31 8.16 -51.79 -0.42 0.89 16 35 H 0.05 0.84 8.13 -51.69 -0.42 0.42 16 36 H 0.06 0.89 8.17 -51.74 -0.42 0.47 16 37 H 0.06 0.81 7.77 -51.77 -0.40 0.41 16 38 H 0.05 0.81 6.44 -51.90 -0.33 0.47 16 39 H 0.06 0.91 8.16 -51.78 -0.42 0.48 16 40 H 0.04 0.60 7.87 -51.88 -0.41 0.19 16 41 H 0.11 2.22 3.97 -51.89 -0.21 2.01 16 42 H 0.25 6.06 8.31 -40.82 -0.34 5.72 16 43 H 0.13 1.04 6.91 -51.93 -0.36 0.68 16 44 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.13 1.33 8.14 -51.92 -0.42 0.91 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -33.60 349.38 -9.49 -43.09 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.68 Total: 4.64 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 0.04 Total: -9.88 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.33 Total: -47.55 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -2.28 Total: -54.26 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 42.69 SS G_CDS: -0.48 Total: 42.21 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.60 -9.49 -43.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045803347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.293 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds