Wall clock time and date at job start Tue Mar 31 2020 07:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47209 * 2 1 4 4 C 1.50700 * 109.46772 * 239.99838 * 2 1 3 5 5 O 1.21277 * 120.00152 * 259.11756 * 4 2 1 6 6 N 1.34984 * 119.99882 * 79.39955 * 4 2 1 7 7 C 1.44695 * 120.07796 * 184.88244 * 6 4 2 8 8 C 1.51286 * 113.55078 * 267.42638 * 7 6 4 9 9 C 1.51098 * 114.59325 * 297.34658 * 8 7 6 10 10 H 1.09742 * 110.73867 * 177.50723 * 9 8 7 11 11 C 1.54164 * 108.53418 * 299.42218 * 9 8 7 12 12 C 1.54025 * 104.65564 * 91.78012 * 11 9 8 13 13 C 1.52101 * 105.49739 * 12.90939 * 12 11 9 14 14 H 1.09336 * 108.36928 * 122.07106 * 13 12 11 15 15 C 1.49321 * 119.97124 * 4.43546 * 6 4 2 16 16 N 1.47773 * 109.56426 * 4.09034 * 13 12 11 17 17 C 1.37118 * 127.12208 * 159.45952 * 16 13 12 18 18 H 1.08002 * 119.99517 * 173.22772 * 17 16 13 19 19 C 1.38813 * 120.00176 * 353.23294 * 17 16 13 20 20 N 1.31610 * 119.99901 * 5.05963 * 19 17 16 21 21 Si 1.86798 * 119.99914 * 185.06279 * 19 17 16 22 22 H 1.48502 * 109.47072 * 94.99267 * 21 19 17 23 23 H 1.48496 * 109.47146 * 214.99496 * 21 19 17 24 24 H 1.48496 * 109.47255 * 334.99394 * 21 19 17 25 25 S 1.81400 * 109.47228 * 120.00252 * 2 1 3 26 26 C 1.81408 * 101.91980 * 304.99826 * 25 2 1 27 27 O 1.42103 * 108.57966 * 59.48316 * 25 2 1 28 28 O 1.42103 * 108.57686 * 190.51405 * 25 2 1 29 29 H 1.08999 * 109.47391 * 65.36712 * 1 2 3 30 30 H 1.09003 * 109.46719 * 185.37035 * 1 2 3 31 31 H 1.08996 * 109.47099 * 305.36829 * 1 2 3 32 32 H 1.09444 * 108.33340 * 28.02174 * 7 6 4 33 33 H 1.08979 * 109.13065 * 145.26918 * 7 6 4 34 34 H 1.09247 * 108.80671 * 59.27123 * 8 7 6 35 35 H 1.09424 * 108.41789 * 176.08826 * 8 7 6 36 36 H 1.09334 * 110.59382 * 210.79217 * 11 9 8 37 37 H 1.09277 * 110.70115 * 332.58991 * 11 9 8 38 38 H 1.09054 * 110.62395 * 253.35211 * 12 11 9 39 39 H 1.09261 * 110.28001 * 131.84430 * 12 11 9 40 40 H 1.09084 * 109.54661 * 254.71085 * 15 6 4 41 41 H 1.09075 * 109.56353 * 14.58585 * 15 6 4 42 42 H 0.97002 * 120.00248 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.47081 * 60.00013 * 26 25 2 44 44 H 1.08994 * 109.47059 * 180.02562 * 26 25 2 45 45 H 1.09001 * 109.46788 * 300.00324 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.4213 -1.8565 -1.1527 6 7 2.0544 -0.0694 -2.4181 7 6 2.4359 -0.7806 -3.6191 8 6 3.9104 -0.6763 -3.9409 9 6 4.3947 0.7268 -4.2236 10 1 5.4769 0.7352 -4.4050 11 6 3.6289 1.2726 -5.4453 12 6 2.4068 1.9954 -4.8481 13 6 2.6938 2.1165 -3.3593 14 1 2.6673 3.1755 -3.0884 15 6 1.6753 1.3729 -2.4945 16 7 4.0475 1.5979 -3.0725 17 6 4.8234 1.8719 -1.9756 18 1 5.7540 1.3443 -1.8272 19 6 4.4127 2.8272 -1.0560 20 7 3.2337 3.3983 -1.1825 21 14 5.5335 3.3022 0.3608 22 1 6.3161 4.5086 -0.0101 23 1 4.7137 3.5945 1.5640 24 1 6.4619 2.1811 0.6550 25 16 2.1347 -0.8552 1.4811 26 6 1.2998 0.0576 2.8079 27 8 1.6408 -2.1875 1.4680 28 8 3.5343 -0.6350 1.5913 29 1 -0.3634 0.4283 -0.9341 30 1 -0.3633 -1.0232 0.0962 31 1 -0.3633 0.5948 0.8380 32 1 2.1829 -1.8374 -3.4884 33 1 1.8565 -0.3988 -4.4595 34 1 4.4831 -1.0829 -3.1041 35 1 4.1177 -1.2971 -4.8178 36 1 4.2514 1.9738 -6.0076 37 1 3.3115 0.4561 -6.0986 38 1 1.4980 1.4166 -5.0166 39 1 2.2990 2.9875 -5.2929 40 1 0.6825 1.4664 -2.9367 41 1 1.6648 1.8014 -1.4915 42 1 2.9469 4.0661 -0.5401 43 1 0.2203 -0.0210 2.6795 44 1 1.5829 -0.3635 3.7725 45 1 1.5950 1.1062 2.7689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045803347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:30 Heat of formation + Delta-G solvation = -83.627525 kcal Electronic energy + Delta-G solvation = -29797.313032 eV Core-core repulsion = 25942.725755 eV Total energy + Delta-G solvation = -3854.587276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50500 -39.67239 -38.05852 -37.04991 -35.79207 -35.21432 -34.22559 -33.15613 -31.19738 -30.33759 -28.75908 -27.40300 -25.79418 -25.68613 -23.56241 -21.41470 -21.04238 -20.13956 -19.60638 -18.91573 -18.37594 -17.53703 -17.15188 -17.02489 -16.71991 -16.43644 -16.32947 -15.88353 -15.61278 -15.06073 -14.49678 -14.24923 -14.17411 -14.09958 -14.05013 -13.73976 -13.54195 -13.32614 -13.17847 -13.09106 -13.06013 -13.02329 -12.84101 -12.76077 -12.67140 -12.49788 -12.38979 -12.01117 -11.98582 -11.61619 -11.48923 -11.34644 -11.18412 -11.03331 -10.76557 -10.56794 -9.45666 -8.75397 -7.75267 -5.09766 -1.05909 1.42312 1.44634 1.51498 1.56159 1.75093 2.09779 2.51824 2.78318 3.03294 3.31578 3.37984 3.69001 3.72109 3.95561 4.01725 4.06290 4.16620 4.18372 4.20267 4.31213 4.37707 4.52594 4.58440 4.63839 4.69944 4.71696 4.85980 4.88298 4.91933 5.10111 5.13543 5.14365 5.20054 5.29231 5.34010 5.50455 5.58638 5.74074 5.85401 5.91577 6.37101 6.47625 7.10828 7.24315 7.82242 8.54162 9.28350 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012012 B = 0.007257 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.491956 B = 3857.513517 C = 5085.226183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.605 4.605 3 H 0.164 0.836 4 C 0.533 3.467 5 O -0.597 6.597 6 N -0.566 5.566 7 C 0.125 3.875 8 C -0.139 4.139 9 C 0.142 3.858 10 H 0.042 0.958 11 C -0.113 4.113 12 C -0.121 4.121 13 C 0.144 3.856 14 H 0.086 0.914 15 C 0.105 3.895 16 N -0.598 5.598 17 C -0.214 4.214 18 H 0.048 0.952 19 C -0.033 4.033 20 N -0.923 5.923 21 Si 0.929 3.071 22 H -0.287 1.287 23 H -0.276 1.276 24 H -0.301 1.301 25 S 2.413 3.587 26 C -0.627 4.627 27 O -0.962 6.962 28 O -0.993 6.993 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.009 0.991 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.253 0.747 43 H 0.174 0.826 44 H 0.152 0.848 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 -0.285 -1.547 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.715 4.715 3 H 0.182 0.818 4 C 0.321 3.679 5 O -0.481 6.481 6 N -0.294 5.294 7 C 0.002 3.998 8 C -0.179 4.179 9 C 0.036 3.964 10 H 0.060 0.940 11 C -0.151 4.151 12 C -0.160 4.160 13 C 0.038 3.962 14 H 0.103 0.897 15 C -0.018 4.018 16 N -0.321 5.321 17 C -0.343 4.343 18 H 0.066 0.934 19 C -0.227 4.227 20 N -0.573 5.573 21 Si 0.760 3.240 22 H -0.214 1.214 23 H -0.201 1.201 24 H -0.228 1.228 25 S 2.599 3.401 26 C -0.781 4.781 27 O -0.960 6.960 28 O -0.991 6.991 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.028 0.972 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.192 0.808 44 H 0.170 0.830 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.377 -1.431 -1.327 11.543 hybrid contribution 1.134 0.754 0.908 1.637 sum -10.243 -0.677 -0.419 10.274 Atomic orbital electron populations 1.21793 0.84684 1.05105 1.07593 1.30542 1.11113 1.15458 1.14391 0.81805 1.19664 0.77620 0.85379 0.85286 1.90737 1.51415 1.19978 1.85949 1.47955 1.63176 1.12245 1.06022 1.20658 0.95431 0.96342 0.87376 1.21850 0.96580 0.99248 1.00258 1.21261 0.96777 0.89693 0.88682 0.94022 1.22415 0.96631 1.00244 0.95858 1.22160 0.98212 1.00850 0.94734 1.21286 0.83546 0.99684 0.91731 0.89683 1.23344 0.97144 0.76861 1.04419 1.44995 1.14803 1.53128 1.19136 1.19012 1.00870 1.15269 0.99188 0.93351 1.24903 0.98339 0.99459 0.99997 1.69779 1.18098 1.31247 1.38146 0.85812 0.79656 0.77370 0.81198 1.21437 1.20147 1.22781 1.07877 0.75817 0.77015 0.79413 1.30120 1.16470 1.15634 1.15868 1.93491 1.81901 1.34212 1.86348 1.93534 1.32123 1.87129 1.86266 0.89093 0.90304 0.85828 0.92319 0.87982 0.97191 0.89396 0.91906 0.88872 0.89914 0.91201 0.90820 0.88478 0.93638 0.80814 0.82960 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.67 71.98 0.62 -2.29 16 2 C -0.60 -20.50 2.35 29.85 0.07 -20.43 16 3 H 0.16 5.81 6.24 -2.39 -0.01 5.80 16 4 C 0.53 22.78 6.85 87.62 0.60 23.38 16 5 O -0.60 -30.07 14.97 10.85 0.16 -29.90 16 6 N -0.57 -21.83 2.55 -821.25 -2.09 -23.92 16 7 C 0.13 4.37 4.95 86.16 0.43 4.80 16 8 C -0.14 -5.17 5.02 29.41 0.15 -5.02 16 9 C 0.14 5.50 3.80 44.38 0.17 5.67 16 10 H 0.04 1.70 8.20 -1.99 -0.02 1.68 16 11 C -0.11 -3.25 6.03 31.33 0.19 -3.06 16 12 C -0.12 -3.54 5.74 30.64 0.18 -3.36 16 13 C 0.14 5.63 2.30 44.42 0.10 5.73 16 14 H 0.09 3.87 5.99 -2.21 -0.01 3.86 16 15 C 0.10 3.75 4.96 85.80 0.43 4.18 16 16 N -0.60 -27.64 2.34 -647.95 -1.52 -29.15 16 17 C -0.21 -11.63 10.35 84.00 0.87 -10.76 16 18 H 0.05 2.83 7.83 -2.91 -0.02 2.81 16 19 C -0.03 -1.73 5.49 84.86 0.47 -1.26 16 20 N -0.92 -45.18 8.60 21.65 0.19 -44.99 16 21 Si 0.93 44.85 29.56 68.60 2.03 46.88 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 25 S 2.41 85.10 4.44 -56.49 -0.25 84.85 16 26 C -0.63 -11.36 10.03 113.37 1.14 -10.23 16 27 O -0.96 -39.13 17.18 -121.31 -2.08 -41.22 16 28 O -0.99 -46.87 18.10 -127.37 -2.31 -49.17 16 29 H 0.09 1.86 7.48 -2.39 -0.02 1.85 16 30 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 31 H 0.12 1.48 6.72 -2.39 -0.02 1.46 16 32 H 0.06 2.13 7.37 -2.15 -0.02 2.11 16 33 H 0.10 2.80 5.74 -2.40 -0.01 2.79 16 34 H 0.01 0.43 8.16 -2.26 -0.02 0.41 16 35 H 0.09 2.62 8.13 -2.16 -0.02 2.61 16 36 H 0.06 1.76 8.17 -2.21 -0.02 1.74 16 37 H 0.09 2.09 7.77 -2.24 -0.02 2.07 16 38 H 0.08 1.97 6.44 -2.36 -0.02 1.96 16 39 H 0.07 1.91 8.16 -2.25 -0.02 1.89 16 40 H 0.07 2.10 7.87 -2.34 -0.02 2.08 16 41 H 0.10 3.77 3.97 -2.35 -0.01 3.76 16 42 H 0.25 11.96 8.31 -92.71 -0.77 11.19 16 43 H 0.17 1.69 6.91 -2.39 -0.02 1.68 16 44 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -81.60 349.38 0.54 -81.06 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.01 Total: 18.22 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 5.40 Total: -12.66 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -3.43 Total: -98.07 kcal Atomic # 8 Polarization: -116.07 SS G_CDS: -4.23 Total: -120.29 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 85.10 SS G_CDS: -0.25 Total: 84.85 kcal Total: -81.60 0.54 -81.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045803347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.564 kcal (2) G-P(sol) polarization free energy of solvation -81.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds