Wall clock time and date at job start Tue Mar 31 2020 05:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53007 * 109.47358 * 2 1 4 4 C 1.53001 * 109.47023 * 239.99920 * 2 1 3 5 5 C 1.50703 * 109.47398 * 120.00241 * 2 1 3 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 2 1 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 2 1 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 2 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 O 1.42893 * 112.94694 * 53.40419 * 9 8 7 11 11 C 1.53952 * 113.74065 * 281.67451 * 9 8 7 12 12 N 1.47584 * 86.11503 * 222.04511 * 11 9 8 13 13 C 1.34777 * 134.49290 * 204.63718 * 12 11 9 14 14 O 1.21284 * 120.00047 * 180.02562 * 13 12 11 15 15 C 1.50694 * 119.99906 * 359.97438 * 13 12 11 16 16 S 1.81004 * 109.47257 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00210 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99544 * 359.97438 * 17 16 15 19 19 C 1.38794 * 119.99908 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99782 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00308 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46888 * 90.00299 * 21 19 17 23 23 H 1.48503 * 109.47407 * 210.00106 * 21 19 17 24 24 H 1.48500 * 109.47068 * 330.00383 * 21 19 17 25 25 C 1.47585 * 91.01540 * 24.63938 * 12 11 9 26 26 H 1.09011 * 109.47182 * 299.99947 * 1 2 3 27 27 H 1.09007 * 109.47253 * 59.99564 * 1 2 3 28 28 H 1.08998 * 109.47508 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46852 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.46731 * 300.00313 * 3 2 1 31 31 H 1.09003 * 109.46582 * 60.00448 * 3 2 1 32 32 H 1.08992 * 109.47503 * 300.00327 * 4 2 1 33 33 H 1.08998 * 109.46818 * 60.00401 * 4 2 1 34 34 H 1.09008 * 109.47076 * 179.97438 * 4 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 7 5 2 36 36 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 37 37 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 38 38 H 0.96704 * 114.00131 * 309.66537 * 10 9 8 39 39 H 1.08999 * 113.76483 * 336.34259 * 11 9 8 40 40 H 1.08993 * 113.77159 * 107.74872 * 11 9 8 41 41 H 1.09005 * 109.47716 * 300.00157 * 15 13 12 42 42 H 1.09002 * 109.47372 * 59.99894 * 15 13 12 43 43 H 0.97002 * 119.99812 * 179.97438 * 20 19 17 44 44 H 1.08998 * 113.76522 * 221.05638 * 25 12 11 45 45 H 1.08997 * 113.87139 * 89.67444 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 8 1.2441 -1.1710 2.0290 7 7 3.3574 -0.8332 1.4440 8 6 3.8457 -1.5291 2.6370 9 6 5.3756 -1.5334 2.6345 10 8 5.9362 -0.2274 2.4869 11 6 5.9910 -2.5846 1.6930 12 7 6.9527 -2.8495 2.7807 13 6 8.2031 -3.3493 2.8350 14 8 8.7677 -3.4561 3.9031 15 6 8.8995 -3.7764 1.5687 16 16 10.5516 -4.3982 1.9688 17 6 11.1216 -4.8135 0.3541 18 1 10.4826 -4.6538 -0.5018 19 6 12.3914 -5.3469 0.1823 20 7 12.8170 -5.6577 -1.0239 21 14 13.4963 -5.6239 1.6628 22 1 13.2671 -6.9879 2.2032 23 1 14.9170 -5.4862 1.2529 24 1 13.1833 -4.6177 2.7092 25 6 5.9951 -2.3472 3.7852 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6765 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 3.9877 -0.4645 0.8055 36 1 3.4852 -1.0172 3.5293 37 1 3.4795 -2.5557 2.6343 38 1 5.5705 0.2763 1.7467 39 1 5.3287 -3.4233 1.4784 40 1 6.4459 -2.1602 0.7981 41 1 8.3220 -4.5638 1.0842 42 1 8.9859 -2.9231 0.8960 43 1 13.7046 -6.0301 -1.1440 44 1 6.4533 -1.7333 4.5605 45 1 5.3333 -3.1149 4.1863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046384597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:56 Heat of formation + Delta-G solvation = -91.982933 kcal Electronic energy + Delta-G solvation = -25917.621628 eV Core-core repulsion = 22062.672034 eV Total energy + Delta-G solvation = -3854.949594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14419 -40.26224 -38.20294 -36.13020 -35.70244 -34.77104 -32.46356 -30.85491 -29.05667 -27.90848 -27.61912 -26.65124 -26.14035 -25.56860 -23.09034 -21.16737 -20.10053 -19.39063 -17.86763 -17.69459 -17.01928 -16.84019 -16.27826 -15.93355 -15.76468 -15.45664 -14.97562 -14.81628 -14.61945 -14.39945 -14.06650 -14.04883 -13.67694 -13.51590 -13.18452 -12.91486 -12.87029 -12.79582 -12.59430 -12.45397 -12.28896 -12.23638 -12.05158 -11.50574 -11.49139 -11.35840 -11.24592 -11.02459 -10.64932 -10.61466 -10.13672 -9.87273 -9.65328 -9.50757 -9.02606 -8.77171 -8.52863 -6.94878 -6.31290 -4.03344 2.18618 2.46108 2.56057 2.89544 3.04350 3.31722 3.36398 3.49450 3.54793 3.75635 4.04462 4.14405 4.21885 4.30477 4.32009 4.39458 4.65254 4.68140 4.98114 4.99134 5.05814 5.06731 5.07817 5.09949 5.15480 5.17649 5.22407 5.28811 5.36754 5.39331 5.42721 5.44594 5.57396 5.67141 5.73266 5.75075 5.81170 5.86680 5.96914 6.87927 7.04458 7.62947 7.72218 7.91735 8.37011 8.38611 9.14866 10.77863 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.002249 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.909615 B =12445.125489 C =13251.493821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.143 4.143 5 C 0.526 3.474 6 O -0.533 6.533 7 N -0.731 5.731 8 C 0.102 3.898 9 C 0.083 3.917 10 O -0.521 6.521 11 C 0.078 3.922 12 N -0.642 5.642 13 C 0.558 3.442 14 O -0.514 6.514 15 C -0.115 4.115 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.127 3.873 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.398 0.602 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.376 0.624 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.094 0.906 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.602 14.068 0.082 29.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.200 4.200 5 C 0.312 3.688 6 O -0.409 6.409 7 N -0.385 5.385 8 C -0.022 4.022 9 C 0.040 3.960 10 O -0.326 6.326 11 C -0.046 4.046 12 N -0.381 5.381 13 C 0.348 3.652 14 O -0.388 6.388 15 C -0.266 4.266 16 S 0.085 5.915 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C 0.004 3.996 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.233 0.767 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.224 0.776 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.591 13.215 2.681 28.045 hybrid contribution -0.001 0.147 -1.758 1.764 sum -24.592 13.362 0.922 28.002 Atomic orbital electron populations 1.21674 0.91753 1.02997 1.02199 1.20846 0.98273 0.96465 0.93427 1.21889 1.01181 0.93647 1.03212 1.21895 1.01276 1.00817 0.96026 1.20628 0.81710 0.79153 0.87298 1.90722 1.55172 1.48088 1.46901 1.45924 1.07525 1.59459 1.25588 1.21921 0.92165 0.99128 0.88998 1.23081 0.90165 0.84411 0.98322 1.86681 1.65905 1.25518 1.54533 1.23930 0.90175 0.97139 0.93355 1.49690 1.12911 1.65621 1.09848 1.19962 0.78963 0.75296 0.91017 1.90719 1.63927 1.52993 1.31171 1.23204 1.01541 1.04313 0.97494 1.84818 1.09456 1.82355 1.14831 1.22292 1.04486 1.48906 0.91160 0.89412 1.24709 0.96876 0.93559 0.96164 1.69937 1.19245 1.41391 1.21080 0.86733 0.80413 0.80984 0.83727 1.19173 1.19883 1.15906 1.23075 0.89154 0.94422 0.92948 0.91892 0.91857 0.91843 0.92091 0.91078 0.91903 0.91830 0.91075 0.92011 0.76731 0.89786 0.89518 0.77636 0.88623 0.89160 0.88668 0.88594 0.91912 0.88728 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 7.76 37.15 0.29 -0.46 16 2 C -0.09 -0.44 0.87 -155.66 -0.14 -0.58 16 3 C -0.14 -0.50 8.37 37.16 0.31 -0.19 16 4 C -0.14 -0.56 8.37 37.16 0.31 -0.25 16 5 C 0.53 3.97 6.48 -10.98 -0.07 3.90 16 6 O -0.53 -6.25 15.98 5.55 0.09 -6.16 16 7 N -0.73 -3.83 5.12 -60.30 -0.31 -4.14 16 8 C 0.10 0.64 5.28 -4.04 -0.02 0.62 16 9 C 0.08 0.62 1.52 -89.69 -0.14 0.49 16 10 O -0.52 -4.31 13.51 -35.23 -0.48 -4.78 16 11 C 0.08 0.67 8.01 -2.97 -0.02 0.65 16 12 N -0.64 -8.67 3.61 -178.24 -0.64 -9.31 16 13 C 0.56 10.47 8.07 -10.99 -0.09 10.38 16 14 O -0.51 -11.67 16.59 5.55 0.09 -11.58 16 15 C -0.12 -2.29 5.91 36.00 0.21 -2.07 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 17 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 18 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.47 13.97 55.49 0.78 -25.69 16 21 Si 0.86 21.84 27.74 -169.99 -4.71 17.12 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 25 C 0.13 1.31 8.24 -2.97 -0.02 1.28 16 26 H 0.06 0.43 8.10 -51.92 -0.42 0.01 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.06 0.14 7.56 -51.93 -0.39 -0.25 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.18 7.57 -51.92 -0.39 -0.22 16 35 H 0.40 1.11 6.14 -40.82 -0.25 0.86 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.56 8.04 -51.93 -0.42 0.15 16 38 H 0.38 1.51 7.61 45.56 0.35 1.86 16 39 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 42 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.10 0.81 8.10 -51.93 -0.42 0.38 16 LS Contribution 387.45 15.07 5.84 5.84 Total: -1.00 -38.23 387.45 -7.10 -45.32 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.59 Total: -2.77 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 0.84 Total: 1.78 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: -0.18 Total: -39.15 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.29 Total: -22.52 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.23 -7.10 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046384597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.662 kcal (2) G-P(sol) polarization free energy of solvation -38.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds