Wall clock time and date at job start Tue Mar 31 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53007 * 109.47358 * 2 1 4 4 C 1.53001 * 109.47023 * 239.99920 * 2 1 3 5 5 C 1.50703 * 109.47398 * 120.00241 * 2 1 3 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 2 1 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 2 1 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 2 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 O 1.42893 * 112.94694 * 53.40419 * 9 8 7 11 11 C 1.53952 * 113.74065 * 281.67451 * 9 8 7 12 12 N 1.47584 * 86.11503 * 222.04511 * 11 9 8 13 13 C 1.34777 * 134.49290 * 204.63718 * 12 11 9 14 14 O 1.21284 * 120.00047 * 180.02562 * 13 12 11 15 15 C 1.50694 * 119.99906 * 359.97438 * 13 12 11 16 16 S 1.81004 * 109.47257 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00210 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99544 * 359.97438 * 17 16 15 19 19 C 1.38794 * 119.99908 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99782 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00308 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46888 * 90.00299 * 21 19 17 23 23 H 1.48503 * 109.47407 * 210.00106 * 21 19 17 24 24 H 1.48500 * 109.47068 * 330.00383 * 21 19 17 25 25 C 1.47585 * 91.01540 * 24.63938 * 12 11 9 26 26 H 1.09011 * 109.47182 * 299.99947 * 1 2 3 27 27 H 1.09007 * 109.47253 * 59.99564 * 1 2 3 28 28 H 1.08998 * 109.47508 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46852 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.46731 * 300.00313 * 3 2 1 31 31 H 1.09003 * 109.46582 * 60.00448 * 3 2 1 32 32 H 1.08992 * 109.47503 * 300.00327 * 4 2 1 33 33 H 1.08998 * 109.46818 * 60.00401 * 4 2 1 34 34 H 1.09008 * 109.47076 * 179.97438 * 4 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 7 5 2 36 36 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 37 37 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 38 38 H 0.96704 * 114.00131 * 309.66537 * 10 9 8 39 39 H 1.08999 * 113.76483 * 336.34259 * 11 9 8 40 40 H 1.08993 * 113.77159 * 107.74872 * 11 9 8 41 41 H 1.09005 * 109.47716 * 300.00157 * 15 13 12 42 42 H 1.09002 * 109.47372 * 59.99894 * 15 13 12 43 43 H 0.97002 * 119.99812 * 179.97438 * 20 19 17 44 44 H 1.08998 * 113.76522 * 221.05638 * 25 12 11 45 45 H 1.08997 * 113.87139 * 89.67444 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 8 1.2441 -1.1710 2.0290 7 7 3.3574 -0.8332 1.4440 8 6 3.8457 -1.5291 2.6370 9 6 5.3756 -1.5334 2.6345 10 8 5.9362 -0.2274 2.4869 11 6 5.9910 -2.5846 1.6930 12 7 6.9527 -2.8495 2.7807 13 6 8.2031 -3.3493 2.8350 14 8 8.7677 -3.4561 3.9031 15 6 8.8995 -3.7764 1.5687 16 16 10.5516 -4.3982 1.9688 17 6 11.1216 -4.8135 0.3541 18 1 10.4826 -4.6538 -0.5018 19 6 12.3914 -5.3469 0.1823 20 7 12.8170 -5.6577 -1.0239 21 14 13.4963 -5.6239 1.6628 22 1 13.2671 -6.9879 2.2032 23 1 14.9170 -5.4862 1.2529 24 1 13.1833 -4.6177 2.7092 25 6 5.9951 -2.3472 3.7852 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6765 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 3.9877 -0.4645 0.8055 36 1 3.4852 -1.0172 3.5293 37 1 3.4795 -2.5557 2.6343 38 1 5.5705 0.2763 1.7467 39 1 5.3287 -3.4233 1.4784 40 1 6.4459 -2.1602 0.7981 41 1 8.3220 -4.5638 1.0842 42 1 8.9859 -2.9231 0.8960 43 1 13.7046 -6.0301 -1.1440 44 1 6.4533 -1.7333 4.5605 45 1 5.3333 -3.1149 4.1863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046384597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:55 Heat of formation + Delta-G solvation = -122.699110 kcal Electronic energy + Delta-G solvation = -25918.953581 eV Core-core repulsion = 22062.672034 eV Total energy + Delta-G solvation = -3856.281547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.92511 -40.99234 -39.44848 -36.62769 -36.54435 -35.36472 -34.69084 -32.12805 -30.09812 -28.17523 -28.11098 -27.88211 -27.43143 -26.90749 -23.65681 -21.94044 -20.63945 -20.62805 -19.63484 -18.34698 -18.18127 -17.52645 -17.24270 -17.06729 -16.84363 -16.58850 -16.45683 -15.80957 -15.51846 -15.22496 -14.98880 -14.90549 -14.79622 -14.48599 -14.27871 -14.16434 -13.60929 -13.44954 -13.34434 -13.28033 -13.07311 -13.02793 -13.01987 -12.89104 -12.66785 -12.58402 -12.11507 -11.88252 -11.86851 -11.80643 -11.42190 -11.18853 -10.90644 -10.69916 -10.56952 -10.18989 -9.86862 -9.03596 -8.53337 -6.24885 0.91254 1.29999 1.40236 1.47267 1.50370 1.62114 1.86435 2.04322 2.23475 2.62769 2.75702 2.84853 3.05970 3.41575 3.53954 3.63654 3.85814 3.93797 3.97457 4.14695 4.28691 4.30945 4.37152 4.45167 4.49182 4.61001 4.66198 4.74388 4.76408 4.79406 4.82217 4.86726 4.98856 4.99159 5.04635 5.24266 5.31863 5.38251 5.38519 5.69138 6.09261 6.41448 6.46100 6.62277 6.91817 6.99324 7.19904 8.58883 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.002249 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.909615 B =12445.125489 C =13251.493821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.523 3.477 6 O -0.581 6.581 7 N -0.717 5.717 8 C 0.113 3.887 9 C 0.109 3.891 10 O -0.540 6.540 11 C 0.075 3.925 12 N -0.642 5.642 13 C 0.556 3.444 14 O -0.567 6.567 15 C -0.099 4.099 16 S -0.178 6.178 17 C -0.527 4.527 18 H 0.064 0.936 19 C 0.047 3.953 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.257 1.257 24 H -0.239 1.239 25 C 0.116 3.884 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.413 0.587 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.395 0.605 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.277 0.723 44 H 0.079 0.921 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.656 15.133 -0.517 30.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.086 4.086 3 C -0.198 4.198 4 C -0.199 4.199 5 C 0.311 3.689 6 O -0.460 6.460 7 N -0.371 5.371 8 C -0.012 4.012 9 C 0.067 3.933 10 O -0.348 6.348 11 C -0.047 4.047 12 N -0.378 5.378 13 C 0.345 3.655 14 O -0.446 6.446 15 C -0.249 4.249 16 S 0.049 5.951 17 C -0.674 4.674 18 H 0.082 0.918 19 C -0.159 4.159 20 N -0.553 5.553 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.182 1.182 24 H -0.163 1.163 25 C -0.007 4.007 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.246 0.754 39 H 0.139 0.861 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -25.681 14.325 2.020 29.476 hybrid contribution 0.120 -0.084 -1.624 1.631 sum -25.561 14.242 0.396 29.263 Atomic orbital electron populations 1.21685 0.92660 1.02008 1.02374 1.20861 0.97603 0.97398 0.92786 1.21911 1.02284 0.92244 1.03358 1.21912 1.02231 1.00077 0.95651 1.21104 0.81844 0.78529 0.87458 1.90706 1.56438 1.50207 1.48618 1.45779 1.07220 1.58695 1.25399 1.21747 0.90784 0.99463 0.89238 1.22668 0.90503 0.83940 0.96232 1.86655 1.66542 1.25792 1.55823 1.24350 0.89071 0.98361 0.92915 1.49703 1.11933 1.63052 1.13109 1.19639 0.80603 0.75722 0.89557 1.90691 1.65797 1.55726 1.32357 1.23139 0.97953 1.05048 0.98804 1.84781 1.14221 1.82986 1.13161 1.22410 1.04430 1.48620 0.91968 0.91777 1.25533 0.98278 0.93416 0.98659 1.70007 1.20107 1.42333 1.22803 0.85890 0.79355 0.80813 0.80465 1.18675 1.18160 1.16305 1.23446 0.88590 0.95509 0.93130 0.93377 0.89982 0.93429 0.90354 0.89821 0.92932 0.92961 0.89849 0.90478 0.74977 0.90345 0.89112 0.75372 0.86062 0.87778 0.87077 0.87232 0.91303 0.90236 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 7.76 71.98 0.56 -0.85 16 2 C -0.08 -0.69 0.87 -52.93 -0.05 -0.73 16 3 C -0.14 -0.62 8.37 71.98 0.60 -0.02 16 4 C -0.14 -0.72 8.37 71.98 0.60 -0.12 16 5 C 0.52 7.02 6.48 87.66 0.57 7.59 16 6 O -0.58 -13.31 15.98 -3.04 -0.05 -13.35 16 7 N -0.72 -5.48 5.12 -463.07 -2.37 -7.85 16 8 C 0.11 1.11 5.28 86.38 0.46 1.57 16 9 C 0.11 1.32 1.52 -10.13 -0.02 1.31 16 10 O -0.54 -7.33 13.51 -148.98 -2.01 -9.35 16 11 C 0.07 1.03 8.01 86.48 0.69 1.73 16 12 N -0.64 -16.00 3.61 -840.03 -3.03 -19.03 16 13 C 0.56 20.31 8.07 87.66 0.71 21.02 16 14 O -0.57 -25.84 16.59 -3.04 -0.05 -25.89 16 15 C -0.10 -3.82 5.91 71.23 0.42 -3.40 16 16 S -0.18 -9.15 18.55 -56.49 -1.05 -10.19 16 17 C -0.53 -30.60 10.04 67.95 0.68 -29.92 16 18 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 19 C 0.05 2.74 5.50 84.86 0.47 3.21 16 20 N -0.91 -55.31 13.97 21.65 0.30 -55.01 16 21 Si 0.91 45.11 27.74 68.60 1.90 47.01 16 22 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 25 C 0.12 2.14 8.24 86.48 0.71 2.85 16 26 H 0.05 0.65 8.10 -2.38 -0.02 0.63 16 27 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 29 H 0.08 0.07 7.56 -2.39 -0.02 0.05 16 30 H 0.08 0.19 8.14 -2.39 -0.02 0.18 16 31 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.08 0.15 7.57 -2.38 -0.02 0.14 16 35 H 0.41 0.72 6.14 -92.71 -0.57 0.15 16 36 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 37 H 0.09 0.91 8.04 -2.39 -0.02 0.90 16 38 H 0.39 1.73 7.61 -74.05 -0.56 1.17 16 39 H 0.12 1.17 8.03 -2.39 -0.02 1.15 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 42 H 0.11 3.91 8.14 -2.39 -0.02 3.90 16 43 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.13 1.71 8.10 -2.39 -0.02 1.69 16 Total: -1.00 -85.19 387.45 -0.12 -85.30 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -0.17 Total: 4.12 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 6.41 Total: 4.24 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -5.10 Total: -81.88 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -2.11 Total: -48.59 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.05 Total: -10.19 kcal Total: -85.19 -0.12 -85.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046384597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.394 kcal (2) G-P(sol) polarization free energy of solvation -85.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds