Wall clock time and date at job start Tue Mar 31 2020 05:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 110.64144 * 2 1 4 4 C 1.34777 * 120.00030 * 303.14318 * 3 2 1 5 5 O 1.21279 * 120.00150 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00278 * 180.02562 * 4 3 2 7 7 C 1.52588 * 109.24102 * 300.55779 * 6 4 3 8 8 C 1.53046 * 109.97868 * 169.67202 * 7 6 4 9 9 S 1.81669 * 108.96662 * 63.70452 * 8 7 6 10 10 O 1.42097 * 108.66525 * 191.35167 * 9 8 7 11 11 O 1.42098 * 108.66275 * 60.01610 * 9 8 7 12 12 C 1.81664 * 101.30886 * 305.68593 * 9 8 7 13 13 C 1.52580 * 109.24498 * 179.44162 * 6 4 3 14 14 C 1.55151 * 110.71906 * 123.14120 * 2 1 3 15 15 C 1.54914 * 101.58023 * 154.03951 * 14 2 1 16 16 N 1.47420 * 104.83159 * 322.99181 * 15 14 2 17 17 C 1.36945 * 125.64792 * 204.08975 * 16 15 14 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47020 * 108.70626 * 24.35323 * 16 15 14 26 26 H 1.09000 * 109.47012 * 296.85846 * 1 2 3 27 27 H 1.09000 * 109.47235 * 56.85267 * 1 2 3 28 28 H 1.08999 * 109.47449 * 176.86138 * 1 2 3 29 29 H 0.97000 * 120.00525 * 123.14249 * 3 2 1 30 30 H 1.08998 * 109.23456 * 59.99370 * 6 4 3 31 31 H 1.08997 * 109.38751 * 289.87454 * 7 6 4 32 32 H 1.09004 * 109.38243 * 49.55199 * 7 6 4 33 33 H 1.09010 * 109.58145 * 303.85399 * 8 7 6 34 34 H 1.08996 * 109.63505 * 183.58888 * 8 7 6 35 35 H 1.09009 * 109.54886 * 294.43789 * 12 9 8 36 36 H 1.09002 * 109.55533 * 174.15729 * 12 9 8 37 37 H 1.09004 * 109.38639 * 310.44225 * 13 6 4 38 38 H 1.09006 * 109.38818 * 70.23037 * 13 6 4 39 39 H 1.09002 * 111.00697 * 35.96845 * 14 2 1 40 40 H 1.08994 * 111.00548 * 272.11313 * 14 2 1 41 41 H 1.08999 * 110.37083 * 204.15142 * 15 14 2 42 42 H 1.08999 * 110.36305 * 81.82793 * 15 14 2 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.88406 * 118.12749 * 25 16 15 45 45 H 1.09001 * 109.88743 * 239.29401 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.6868 2.2265 -0.9773 5 8 0.9360 1.8614 -1.8570 6 6 2.2185 3.6366 -0.9777 7 6 1.7990 4.3325 0.3139 8 6 2.5362 5.6666 0.4522 9 16 2.0348 6.7621 -0.9075 10 8 2.9048 7.8853 -0.9310 11 8 0.6312 6.9693 -0.8306 12 6 2.3904 5.7210 -2.3532 13 6 1.6697 4.3807 -2.1914 14 6 2.0789 -0.7934 1.2151 15 6 3.4652 -1.2447 0.6912 16 7 3.2493 -1.5470 -0.7354 17 6 4.0124 -2.3919 -1.4965 18 1 3.7712 -2.5469 -2.5378 19 6 5.0957 -3.0490 -0.9297 20 7 5.3893 -2.8605 0.3394 21 14 6.1362 -4.2020 -1.9678 22 1 5.5791 -5.5764 -1.8904 23 1 6.1254 -3.7424 -3.3798 24 1 7.5310 -4.2039 -1.4583 25 6 2.0831 -0.7864 -1.2074 26 1 -0.3633 0.4643 0.9168 27 1 -0.3634 0.5619 -0.8604 28 1 -0.3634 -1.0261 -0.0563 29 1 2.6472 1.6630 0.7033 30 1 3.3067 3.6101 -1.0343 31 1 0.7242 4.5125 0.2953 32 1 2.0428 3.6951 1.1639 33 1 3.6119 5.4962 0.4056 34 1 2.2811 6.1288 1.4058 35 1 3.4647 5.5511 -2.4250 36 1 2.0373 6.2183 -3.2566 37 1 1.8234 3.7770 -3.0859 38 1 0.6031 4.5595 -2.0545 39 1 1.4469 -1.6529 1.4383 40 1 2.1821 -0.1490 2.0881 41 1 3.7993 -2.1364 1.2216 42 1 4.1929 -0.4410 0.8028 43 1 6.1462 -3.3200 0.7356 44 1 2.3847 -0.0961 -1.9951 45 1 1.3215 -1.4701 -1.5824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046667552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:06 Heat of formation + Delta-G solvation = -82.865600 kcal Electronic energy + Delta-G solvation = -27543.855630 eV Core-core repulsion = 23689.301393 eV Total energy + Delta-G solvation = -3854.554237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.41394 -38.07819 -37.29840 -36.35484 -36.26906 -34.13857 -32.39069 -31.80526 -30.18413 -28.80730 -28.25886 -25.74236 -24.04077 -23.73903 -22.53201 -20.50788 -20.20845 -19.20350 -19.06597 -17.66022 -17.07693 -16.76131 -16.66059 -16.02243 -15.71461 -15.15946 -14.76150 -14.51390 -14.48994 -14.05029 -13.74866 -13.51255 -13.30699 -13.23243 -12.80644 -12.47376 -12.44634 -12.32689 -12.29948 -12.18959 -12.05697 -11.82572 -11.73102 -11.61848 -11.36862 -11.03911 -10.99338 -10.89821 -10.47925 -10.40399 -10.36314 -10.13623 -10.01181 -9.71751 -9.32259 -8.75244 -8.68514 -6.87208 -5.70669 -3.11316 -0.31481 2.31770 2.70064 3.15869 3.31887 3.36828 3.42324 3.43907 3.65952 4.06071 4.15248 4.25205 4.40668 4.45744 4.53092 4.72820 4.86350 4.93618 5.08431 5.15772 5.26437 5.33035 5.39004 5.43212 5.49496 5.51680 5.67323 5.70055 5.87118 5.98854 6.11256 6.16445 6.29654 6.39638 6.45522 6.63761 6.75005 7.04846 7.37529 7.57979 7.70176 7.78643 8.29483 8.38487 9.17810 9.78513 10.42793 11.33611 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.002964 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.815924 B = 9443.717378 C = 9927.292755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.158 3.842 3 N -0.706 5.706 4 C 0.523 3.477 5 O -0.531 6.531 6 C -0.131 4.131 7 C -0.104 4.104 8 C -0.602 4.602 9 S 2.414 3.586 10 O -0.946 6.946 11 O -0.936 6.936 12 C -0.601 4.601 13 C -0.092 4.092 14 C -0.147 4.147 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.219 4.219 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.282 1.282 24 H -0.291 1.291 25 C 0.138 3.862 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.398 0.602 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.010 0.990 43 H 0.251 0.749 44 H 0.030 0.970 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 16.496 2.345 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.073 3.927 3 N -0.356 5.356 4 C 0.308 3.692 5 O -0.408 6.408 6 C -0.153 4.153 7 C -0.142 4.142 8 C -0.731 4.731 9 S 2.596 3.404 10 O -0.943 6.943 11 O -0.933 6.933 12 C -0.730 4.730 13 C -0.131 4.131 14 C -0.186 4.186 15 C 0.028 3.972 16 N -0.330 5.330 17 C -0.347 4.347 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.574 5.574 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.208 1.208 24 H -0.217 1.217 25 C 0.011 3.989 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.232 0.768 30 H 0.128 0.872 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.028 0.972 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.327 16.946 1.756 18.546 hybrid contribution 1.492 -1.163 -0.184 1.901 sum -5.835 15.783 1.573 16.901 Atomic orbital electron populations 1.22071 0.94041 1.02544 1.02429 1.21392 0.93153 0.80233 0.97960 1.46008 1.49399 1.12166 1.28035 1.20021 0.81115 0.86237 0.81791 1.90674 1.35822 1.78060 1.36238 1.21554 1.03463 0.94186 0.96082 1.21290 1.01323 0.93656 0.97953 1.30226 1.11417 1.11737 1.19755 1.08164 0.75793 0.77052 0.79409 1.93598 1.68084 1.46604 1.86001 1.93597 1.29490 1.84586 1.85615 1.30238 1.10988 1.11457 1.20352 1.21089 1.00313 0.92182 0.99499 1.23360 1.01264 0.98899 0.95039 1.21938 0.89330 1.00634 0.85345 1.44510 1.30846 1.50312 1.07355 1.19093 1.05954 1.16711 0.92990 0.90550 1.24758 0.98765 1.00705 0.96469 1.69773 1.30205 1.46509 1.10870 0.86071 0.79535 0.80769 0.79141 1.21565 1.20770 1.21675 1.21595 0.90321 0.93149 0.93793 0.93160 0.90435 0.91792 0.76795 0.87225 0.88887 0.88758 0.84479 0.84363 0.84681 0.84397 0.88041 0.89016 0.90495 0.91911 0.87420 0.97246 0.93782 0.95222 0.95186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.44 37.16 0.31 -1.94 16 2 C 0.16 2.62 0.81 -129.98 -0.11 2.51 16 3 N -0.71 -9.66 4.94 -45.91 -0.23 -9.89 16 4 C 0.52 7.01 6.34 -10.98 -0.07 6.94 16 5 O -0.53 -8.88 12.75 5.56 0.07 -8.81 16 6 C -0.13 -1.17 2.27 -92.20 -0.21 -1.38 16 7 C -0.10 -0.71 4.99 -26.92 -0.13 -0.84 16 8 C -0.60 -3.20 6.35 37.18 0.24 -2.96 16 9 S 2.41 18.56 5.31 -107.50 -0.57 17.99 16 10 O -0.95 -10.51 18.10 -57.81 -1.05 -11.55 16 11 O -0.94 -10.51 17.93 -57.81 -1.04 -11.55 16 12 C -0.60 -3.80 6.35 37.17 0.24 -3.56 16 13 C -0.09 -0.80 4.46 -26.93 -0.12 -0.92 16 14 C -0.15 -2.49 6.07 -24.58 -0.15 -2.64 16 15 C 0.15 3.44 5.87 -2.53 -0.01 3.43 16 16 N -0.60 -15.07 3.39 -170.07 -0.58 -15.64 16 17 C -0.22 -6.05 10.27 -15.06 -0.15 -6.20 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.10 10.09 55.49 0.56 -25.54 16 21 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.14 2.93 6.19 -3.06 -0.02 2.91 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.23 5.97 -51.93 -0.31 0.92 16 28 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.40 4.52 7.76 -40.82 -0.32 4.20 16 30 H 0.11 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.09 0.66 8.01 -51.93 -0.42 0.24 16 32 H 0.09 0.55 7.22 -51.93 -0.38 0.18 16 33 H 0.14 0.47 8.14 -51.92 -0.42 0.04 16 34 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.01 7.73 -51.93 -0.40 0.61 16 38 H 0.09 0.83 8.00 -51.93 -0.42 0.41 16 39 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 40 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.11 2.78 5.87 -51.93 -0.30 2.48 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.03 0.68 6.90 -51.93 -0.36 0.32 16 45 H 0.03 0.66 7.78 -51.93 -0.40 0.25 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -36.58 359.83 -9.78 -46.36 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.06 Total: 1.52 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.29 Total: -5.09 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.24 Total: -51.07 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -2.01 Total: -31.91 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 18.56 SS G_CDS: -0.57 Total: 17.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.58 -9.78 -46.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046667552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.506 kcal (2) G-P(sol) polarization free energy of solvation -36.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds