Wall clock time and date at job start Tue Mar 31 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46492 * 110.88382 * 2 1 4 4 C 1.34778 * 120.00118 * 62.43134 * 3 2 1 5 5 O 1.21288 * 119.99863 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00333 * 179.97438 * 4 3 2 7 7 C 1.52776 * 109.21229 * 301.20392 * 6 4 3 8 8 C 1.53036 * 109.88578 * 169.76764 * 7 6 4 9 9 S 1.81667 * 109.07712 * 63.59338 * 8 7 6 10 10 O 1.42101 * 108.66298 * 59.98171 * 9 8 7 11 11 O 1.42103 * 108.66467 * 191.32186 * 9 8 7 12 12 C 1.81668 * 101.30838 * 305.65187 * 9 8 7 13 13 C 1.52597 * 109.24347 * 179.97438 * 6 4 3 14 14 C 1.55164 * 111.03470 * 236.09745 * 2 1 3 15 15 C 1.54318 * 102.93997 * 206.40950 * 14 2 1 16 16 N 1.47021 * 107.27202 * 22.19303 * 15 14 2 17 17 C 1.36943 * 125.64872 * 181.02277 * 16 15 14 18 18 H 1.08000 * 119.99990 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99970 * 0.04515 * 17 16 15 20 20 N 1.31622 * 119.99757 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00033 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47132 * 90.00091 * 21 19 17 23 23 H 1.48500 * 109.47520 * 209.99681 * 21 19 17 24 24 H 1.48500 * 109.47461 * 330.00320 * 21 19 17 25 25 C 1.47424 * 108.70444 * 1.06020 * 16 15 14 26 26 H 1.08994 * 109.46879 * 60.70236 * 1 2 3 27 27 H 1.09005 * 109.46729 * 180.70016 * 1 2 3 28 28 H 1.08993 * 109.46702 * 300.69426 * 1 2 3 29 29 H 0.97000 * 120.00278 * 242.42211 * 3 2 1 30 30 H 1.09004 * 109.23943 * 60.56264 * 6 4 3 31 31 H 1.08998 * 109.51808 * 49.58765 * 7 6 4 32 32 H 1.09003 * 109.34993 * 289.84204 * 7 6 4 33 33 H 1.09002 * 109.55147 * 303.68748 * 8 7 6 34 34 H 1.09003 * 109.54767 * 183.49563 * 8 7 6 35 35 H 1.09000 * 109.55007 * 174.15498 * 12 9 8 36 36 H 1.09008 * 109.55103 * 294.34978 * 12 9 8 37 37 H 1.08995 * 109.38207 * 70.13383 * 13 6 4 38 38 H 1.08993 * 109.29745 * 310.39463 * 13 6 4 39 39 H 1.09000 * 110.71947 * 324.77322 * 14 2 1 40 40 H 1.09000 * 110.71581 * 88.04644 * 14 2 1 41 41 H 1.09009 * 109.88010 * 262.77788 * 15 14 2 42 42 H 1.08992 * 109.88329 * 141.61621 * 15 14 2 43 43 H 0.97001 * 119.99671 * 179.97438 * 20 19 17 44 44 H 1.08994 * 110.36824 * 217.03128 * 25 16 15 45 45 H 1.09002 * 110.36603 * 94.71069 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 1.0347 5 8 1.1171 1.7977 1.9656 6 6 2.3255 3.5986 1.0350 7 6 3.8499 3.5546 0.9439 8 6 4.3969 4.9607 0.6875 9 16 3.9950 6.0220 2.1062 10 8 4.5939 5.4704 3.2708 11 8 4.2666 7.3720 1.7555 12 6 2.1953 5.8012 2.2177 13 6 1.8811 4.3064 2.3118 14 6 2.0870 -0.8078 -1.2020 15 6 3.4683 -1.2732 -0.6953 16 7 3.4275 -1.2420 0.7740 17 6 4.4643 -1.5651 1.6083 18 1 4.3332 -1.5102 2.6789 19 6 5.6840 -1.9627 1.0779 20 7 5.8437 -2.0297 -0.2269 21 14 7.0984 -2.4026 2.2158 22 1 7.0457 -3.8523 2.5335 23 1 8.3871 -2.0889 1.5479 24 1 6.9870 -1.6166 3.4708 25 6 2.0853 -0.8063 1.2005 26 1 -0.3633 0.5029 -0.8962 27 1 -0.3633 -1.0277 0.0126 28 1 -0.3632 0.5246 0.8837 29 1 2.5886 1.6832 -0.7446 30 1 1.9303 4.1342 0.1718 31 1 4.1471 2.8964 0.1276 32 1 4.2568 3.1734 1.8806 33 1 3.9422 5.3701 -0.2146 34 1 5.4786 4.9139 0.5618 35 1 1.8198 6.3093 3.1059 36 1 1.7207 6.2196 1.3301 37 1 2.4087 3.8792 3.1645 38 1 0.8080 4.1696 2.4447 39 1 1.4481 -1.6634 -1.4209 40 1 2.1930 -0.1698 -2.0794 41 1 4.2433 -0.5984 -1.0590 42 1 3.6666 -2.2883 -1.0392 43 1 6.6961 -2.3072 -0.5975 44 1 2.1554 -0.1715 2.0838 45 1 1.4523 -1.6703 1.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046667553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:12 Heat of formation + Delta-G solvation = -84.329940 kcal Electronic energy + Delta-G solvation = -28021.383031 eV Core-core repulsion = 24166.765296 eV Total energy + Delta-G solvation = -3854.617735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30343 -37.99064 -37.17731 -36.21819 -36.14502 -34.04615 -32.31171 -31.72856 -30.15713 -28.80049 -28.17440 -25.70171 -23.91532 -23.71052 -22.44152 -20.53361 -20.01827 -19.09298 -19.01184 -17.57718 -16.97453 -16.64359 -16.53344 -15.88881 -15.64024 -15.05297 -14.66758 -14.46018 -14.33029 -14.05227 -13.69046 -13.43017 -13.28928 -13.12779 -12.86154 -12.38486 -12.30655 -12.16972 -12.08061 -12.03933 -11.97208 -11.85414 -11.72309 -11.58876 -11.26536 -10.90914 -10.90235 -10.88503 -10.43009 -10.40996 -10.23043 -10.09278 -10.03987 -9.67721 -9.31244 -8.69586 -8.57641 -6.82378 -5.72908 -3.04733 -0.19011 2.44654 2.78125 3.28098 3.40231 3.44680 3.46202 3.47919 3.77003 4.18671 4.30117 4.39197 4.49758 4.52575 4.65405 4.82228 4.95205 5.00708 5.12175 5.28694 5.33302 5.36425 5.45291 5.57209 5.58940 5.65215 5.68201 5.92008 5.94958 5.96392 6.08523 6.09440 6.29076 6.34618 6.48564 6.62019 6.79003 7.07526 7.51707 7.52658 7.77011 7.81169 8.23927 8.47029 9.21944 9.81932 10.47442 11.39092 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.004351 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.540103 B = 6433.025728 C = 8001.910034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.155 3.845 3 N -0.699 5.699 4 C 0.525 3.475 5 O -0.534 6.534 6 C -0.127 4.127 7 C -0.106 4.106 8 C -0.599 4.599 9 S 2.412 3.588 10 O -0.932 6.932 11 O -0.948 6.948 12 C -0.601 4.601 13 C -0.093 4.093 14 C -0.147 4.147 15 C 0.178 3.822 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.925 5.925 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.131 3.869 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.397 0.603 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.251 0.749 44 H 0.057 0.943 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 14.563 -3.361 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.068 3.932 3 N -0.349 5.349 4 C 0.310 3.690 5 O -0.411 6.411 6 C -0.149 4.149 7 C -0.145 4.145 8 C -0.728 4.728 9 S 2.594 3.406 10 O -0.929 6.929 11 O -0.945 6.945 12 C -0.730 4.730 13 C -0.131 4.131 14 C -0.185 4.185 15 C 0.053 3.947 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.573 5.573 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.004 3.996 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.232 0.768 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.258 14.715 -2.180 17.521 hybrid contribution 0.641 -0.558 -0.526 0.999 sum -8.617 14.157 -2.706 16.793 Atomic orbital electron populations 1.21987 0.94396 1.02222 1.02140 1.21511 0.92494 0.80773 0.98378 1.45803 1.53967 1.12775 1.22376 1.20000 0.80283 0.86371 0.82330 1.90671 1.39343 1.76349 1.34720 1.21551 0.96743 0.95774 1.00823 1.21342 0.92586 0.94003 1.06543 1.30211 1.11898 1.10774 1.19931 1.08231 0.78816 0.75919 0.77678 1.93620 1.74065 1.79959 1.45225 1.93587 1.83591 1.32714 1.84649 1.30230 1.25556 1.05440 1.11797 1.21091 1.05674 0.88687 0.97668 1.23232 1.00572 0.98902 0.95824 1.21145 0.89877 0.99909 0.83780 1.44441 1.07780 1.78933 1.01734 1.19063 0.89279 1.37618 0.89005 0.90566 1.24744 0.97733 1.01974 0.95985 1.69945 1.24120 1.54088 1.09183 0.86158 0.81938 0.78280 0.79693 1.21650 1.21735 1.20637 1.21890 0.87551 0.94894 0.95248 0.93198 0.91835 0.91049 0.76822 0.87730 0.88298 0.88505 0.84809 0.84238 0.84533 0.84947 0.88836 0.88298 0.90904 0.91846 0.93681 0.93887 0.93890 0.92503 0.95819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.62 37.16 0.32 -1.77 16 2 C 0.16 2.53 0.82 -129.67 -0.11 2.42 16 3 N -0.70 -9.93 4.98 -45.62 -0.23 -10.16 16 4 C 0.53 7.41 6.53 -10.99 -0.07 7.34 16 5 O -0.53 -9.24 12.55 5.55 0.07 -9.17 16 6 C -0.13 -1.25 2.28 -92.10 -0.21 -1.46 16 7 C -0.11 -1.09 5.01 -26.83 -0.13 -1.23 16 8 C -0.60 -4.57 6.34 37.18 0.24 -4.34 16 9 S 2.41 22.76 5.31 -107.50 -0.57 22.19 16 10 O -0.93 -12.86 17.95 -57.81 -1.04 -13.90 16 11 O -0.95 -11.67 18.10 -57.81 -1.05 -12.72 16 12 C -0.60 -4.16 6.35 37.17 0.24 -3.92 16 13 C -0.09 -0.89 4.47 -26.92 -0.12 -1.01 16 14 C -0.15 -2.43 5.99 -24.90 -0.15 -2.58 16 15 C 0.18 4.01 5.36 -3.07 -0.02 3.99 16 16 N -0.60 -14.86 3.39 -170.08 -0.58 -15.44 16 17 C -0.22 -6.11 10.28 -15.06 -0.15 -6.26 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.93 -26.34 10.31 55.49 0.57 -25.77 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.13 2.75 6.11 -2.53 -0.02 2.73 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.07 1.09 6.45 -51.93 -0.34 0.75 16 29 H 0.40 4.79 7.73 -40.82 -0.32 4.48 16 30 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.10 1.05 7.20 -51.93 -0.37 0.67 16 32 H 0.10 1.19 8.02 -51.93 -0.42 0.78 16 33 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.14 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.09 1.04 8.02 -51.93 -0.42 0.63 16 38 H 0.10 0.96 7.72 -51.93 -0.40 0.56 16 39 H 0.07 1.14 8.04 -51.93 -0.42 0.73 16 40 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 41 H 0.05 1.10 7.38 -51.92 -0.38 0.72 16 42 H 0.04 1.10 7.51 -51.93 -0.39 0.71 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.06 1.29 6.32 -51.93 -0.33 0.96 16 45 H 0.02 0.51 8.03 -51.93 -0.42 0.09 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -36.77 360.64 -9.80 -46.57 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.11 Total: 2.27 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.28 Total: -6.41 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.23 Total: -51.37 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -2.01 Total: -35.79 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 22.76 SS G_CDS: -0.57 Total: 22.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.77 -9.80 -46.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046667553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.755 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds