Wall clock time and date at job start Tue Mar 31 2020 05:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 O 1.21279 * 120.00072 * 119.99863 * 4 2 1 6 6 N 1.34777 * 119.99762 * 300.00068 * 4 2 1 7 7 C 1.46504 * 119.99858 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 9 9 H 1.09007 * 110.88062 * 0.69446 * 8 6 4 10 10 C 1.54912 * 111.00793 * 124.57566 * 8 6 4 11 11 N 1.47421 * 104.83116 * 155.08688 * 10 8 6 12 12 C 1.34777 * 125.64915 * 155.91322 * 11 10 8 13 13 O 1.21279 * 119.99783 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00104 * 179.97438 * 12 11 10 15 15 S 1.80998 * 109.47388 * 179.97438 * 14 12 11 16 16 C 1.76194 * 100.00336 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99696 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00302 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99741 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00058 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47457 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47216 * 119.99970 * 20 18 16 23 23 H 1.48508 * 109.46815 * 239.99614 * 20 18 16 24 24 C 1.47030 * 108.70421 * 335.87108 * 11 10 8 25 25 C 1.54371 * 107.28672 * 1.09620 * 24 11 10 26 26 H 1.09001 * 110.70450 * 263.79631 * 25 24 11 27 27 O 1.42896 * 110.75634 * 140.50290 * 25 24 11 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.09002 * 109.46944 * 90.00712 * 7 6 4 36 36 H 1.09001 * 109.47272 * 209.99997 * 7 6 4 37 37 H 1.08996 * 109.47264 * 330.00264 * 7 6 4 38 38 H 1.08994 * 110.36548 * 273.92502 * 10 8 6 39 39 H 1.09002 * 110.36124 * 36.24913 * 10 8 6 40 40 H 1.09000 * 109.47478 * 300.00171 * 14 12 11 41 41 H 1.09003 * 109.46880 * 59.99842 * 14 12 11 42 42 H 0.96997 * 120.00020 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.87809 * 120.47648 * 24 11 10 44 44 H 1.08996 * 109.88288 * 241.49196 * 24 11 10 45 45 H 0.96706 * 113.99947 * 66.48194 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7296 -0.1209 -2.0288 6 7 1.7067 -2.0006 -1.4439 7 6 0.8649 -2.7128 -0.4793 8 6 2.1955 -2.6914 -2.6398 9 1 2.8155 -2.0296 -3.2446 10 6 2.9656 -3.9809 -2.2605 11 7 2.8572 -4.8482 -3.4477 12 6 3.7097 -5.8387 -3.7773 13 8 4.6650 -6.0772 -3.0693 14 6 3.4758 -6.6498 -5.0257 15 16 4.7817 -7.8919 -5.1918 16 6 4.2746 -8.6709 -6.6886 17 1 3.3862 -8.3310 -7.2001 18 6 5.0163 -9.7220 -7.2098 19 7 6.0988 -10.1365 -6.5861 20 14 4.4790 -10.5474 -8.7971 21 1 3.2400 -9.8995 -9.2972 22 1 5.5534 -10.4128 -9.8133 23 1 4.2163 -11.9867 -8.5422 24 6 1.6645 -4.4543 -4.2120 25 6 1.0177 -3.2641 -3.4717 26 1 0.2151 -3.6068 -2.8185 27 8 0.5350 -2.2916 -4.4008 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 -0.1832 -2.5928 -0.7536 36 1 1.1227 -3.7719 -0.4843 37 1 1.0288 -2.3037 0.5176 38 1 4.0107 -3.7513 -2.0526 39 1 2.5025 -4.4593 -1.3975 40 1 2.5077 -7.1464 -4.9604 41 1 3.4884 -5.9914 -5.8944 42 1 6.6173 -10.8708 -6.9505 43 1 1.9527 -4.1515 -5.2186 44 1 0.9642 -5.2880 -4.2620 45 1 -0.2020 -2.6001 -4.9457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048254008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:46 Heat of formation + Delta-G solvation = -107.498041 kcal Electronic energy + Delta-G solvation = -26409.694477 eV Core-core repulsion = 22554.072098 eV Total energy + Delta-G solvation = -3855.622380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94383 -39.65418 -37.99266 -36.01487 -35.39921 -34.67768 -32.45421 -30.91394 -29.02946 -28.47142 -27.55484 -27.15045 -25.52958 -24.31150 -23.04897 -20.97626 -19.67207 -19.33994 -18.12930 -17.78863 -17.30375 -17.00575 -16.26859 -15.80448 -15.66173 -15.18639 -14.89334 -14.82767 -14.57335 -14.20890 -13.96637 -13.82179 -13.49484 -13.16939 -13.07618 -12.82950 -12.72678 -12.64333 -12.63098 -12.52704 -12.18859 -12.12625 -11.88918 -11.47464 -11.44543 -11.09204 -11.04876 -11.02612 -10.78649 -10.66118 -9.96563 -9.83606 -9.52286 -9.11292 -9.09435 -8.61163 -8.26863 -6.53626 -6.24202 -3.95230 2.31487 2.36954 2.86828 2.97177 3.19944 3.23139 3.29138 3.50859 3.73379 4.07392 4.13184 4.18352 4.27628 4.45540 4.51599 4.58270 4.62762 4.80929 4.90163 4.94978 4.97931 5.02392 5.11083 5.17145 5.20546 5.32983 5.36148 5.45473 5.48714 5.51583 5.52091 5.64511 5.69475 5.75329 5.84837 5.90268 6.02455 6.08662 6.26772 6.97339 7.23057 7.49779 7.57535 7.85841 8.32856 8.43895 9.21161 10.83310 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.030097 B = 0.002282 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.092404 B =12268.275865 C =12651.883349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.521 3.479 5 O -0.529 6.529 6 N -0.605 5.605 7 C 0.067 3.933 8 C 0.136 3.864 9 H 0.126 0.874 10 C 0.101 3.899 11 N -0.622 5.622 12 C 0.551 3.449 13 O -0.510 6.510 14 C -0.147 4.147 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.920 3.080 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.073 3.927 25 C 0.085 3.915 26 H 0.078 0.922 27 O -0.548 6.548 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.477 18.851 13.681 29.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.134 4.134 3 C -0.191 4.191 4 C 0.310 3.690 5 O -0.404 6.404 6 N -0.338 5.338 7 C -0.076 4.076 8 C 0.031 3.969 9 H 0.144 0.856 10 C -0.023 4.023 11 N -0.361 5.361 12 C 0.340 3.660 13 O -0.383 6.383 14 C -0.297 4.297 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.052 4.052 25 C 0.024 3.976 26 H 0.095 0.905 27 O -0.353 6.353 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -14.991 18.989 14.557 28.235 hybrid contribution -2.029 -0.806 -2.093 3.025 sum -17.020 18.183 12.464 27.850 Atomic orbital electron populations 1.22055 0.92868 1.03431 1.03002 1.21292 0.97752 0.98016 0.96302 1.21623 1.01906 0.93394 1.02165 1.20793 0.79615 0.80919 0.87720 1.90720 1.37445 1.65316 1.46963 1.47614 1.51727 1.11543 1.22965 1.22076 0.94579 0.98271 0.92646 1.22160 0.94450 0.94170 0.86147 0.85611 1.22392 1.02105 0.88707 0.89080 1.48260 1.27200 1.34967 1.25682 1.20088 0.80850 0.78417 0.86663 1.90724 1.28486 1.66685 1.52399 1.23507 1.07011 1.02472 0.96710 1.85424 1.30217 1.34939 1.32735 1.22887 1.14640 1.20900 1.09859 0.90856 1.25004 0.94570 0.96024 0.98035 1.70026 1.15030 1.26478 1.38680 0.86103 0.78629 0.78994 0.81680 1.19618 1.20526 1.20558 1.22742 0.88055 0.97337 0.97068 1.23148 0.95898 0.88032 0.90561 0.90456 1.86628 1.54831 1.40054 1.53748 0.91396 0.91102 0.92024 0.88422 0.91975 0.91868 0.91871 0.91892 0.90473 0.90153 0.89236 0.90890 0.89228 0.89140 0.92195 0.89892 0.90520 0.77093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 8.83 37.16 0.33 -0.44 16 2 C -0.11 -0.77 2.45 -91.77 -0.22 -1.00 16 3 C -0.13 -0.98 8.48 37.16 0.32 -0.66 16 4 C 0.52 5.54 7.08 -10.98 -0.08 5.46 16 5 O -0.53 -7.97 15.36 5.56 0.09 -7.89 16 6 N -0.61 -5.42 2.91 -171.47 -0.50 -5.92 16 7 C 0.07 0.34 7.63 59.85 0.46 0.80 16 8 C 0.14 1.48 3.18 -65.78 -0.21 1.27 16 9 H 0.13 1.77 7.01 -51.92 -0.36 1.41 16 10 C 0.10 1.23 6.47 -2.53 -0.02 1.21 16 11 N -0.62 -8.86 3.33 -170.49 -0.57 -9.43 16 12 C 0.55 10.57 7.87 -10.99 -0.09 10.48 16 13 O -0.51 -11.77 16.12 5.56 0.09 -11.68 16 14 C -0.15 -2.97 5.35 36.01 0.19 -2.78 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 16 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 20 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.07 0.76 6.26 -3.03 -0.02 0.74 16 25 C 0.08 0.75 3.91 -24.87 -0.10 0.65 16 26 H 0.08 0.52 7.17 -51.93 -0.37 0.14 16 27 O -0.55 -5.04 13.39 -35.23 -0.47 -5.51 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.27 4.53 -51.93 -0.24 0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.49 7.40 -51.93 -0.38 0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.06 0.24 6.89 -51.93 -0.36 -0.12 16 36 H 0.08 0.37 6.10 -51.93 -0.32 0.06 16 37 H 0.08 0.27 6.01 -51.93 -0.31 -0.04 16 38 H 0.09 1.25 8.04 -51.93 -0.42 0.84 16 39 H 0.07 0.75 6.09 -51.93 -0.32 0.44 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.38 1.74 9.12 45.56 0.42 2.15 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -38.11 375.85 -7.44 -45.55 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.00 Total: -0.74 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 0.76 Total: 2.85 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.33 Total: -40.70 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.30 Total: -25.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.11 -7.44 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048254008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.950 kcal (2) G-P(sol) polarization free energy of solvation -38.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds