Wall clock time and date at job start Tue Mar 31 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47064 * 2 1 4 4 C 1.50697 * 109.46778 * 120.00322 * 2 1 3 5 5 O 1.21285 * 119.99954 * 274.83409 * 4 2 1 6 6 N 1.34770 * 120.00398 * 94.83913 * 4 2 1 7 7 C 1.47025 * 125.64786 * 354.96669 * 6 4 2 8 8 C 1.54318 * 107.27268 * 181.02657 * 7 6 4 9 9 H 1.08998 * 110.72105 * 263.82536 * 8 7 6 10 10 O 1.42901 * 110.72187 * 140.55575 * 8 7 6 11 11 C 1.55154 * 102.94349 * 22.19295 * 8 7 6 12 12 H 1.09004 * 111.03779 * 82.58592 * 11 8 7 13 13 N 1.46508 * 111.00438 * 206.42575 * 11 8 7 14 14 C 1.46494 * 119.99786 * 53.64829 * 13 11 8 15 15 C 1.34774 * 119.99570 * 233.64741 * 13 11 8 16 16 O 1.21281 * 120.00688 * 0.02562 * 15 13 11 17 17 C 1.50704 * 119.99365 * 179.97438 * 15 13 11 18 18 S 1.81005 * 109.46836 * 180.02562 * 17 15 13 19 19 C 1.76199 * 99.99652 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00236 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99471 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00225 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99625 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46709 * 90.00017 * 23 21 19 25 25 H 1.48497 * 109.46884 * 210.00077 * 23 21 19 26 26 H 1.48496 * 109.47287 * 330.00228 * 23 21 19 27 27 C 1.47422 * 125.65401 * 174.92798 * 6 4 2 28 28 H 1.09000 * 109.47029 * 304.96284 * 1 2 3 29 29 H 1.09007 * 109.46933 * 64.96208 * 1 2 3 30 30 H 1.08998 * 109.47067 * 184.96279 * 1 2 3 31 31 H 1.08997 * 109.46816 * 240.00021 * 2 1 3 32 32 H 1.08994 * 109.47148 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47457 * 299.99948 * 3 2 1 34 34 H 1.09007 * 109.47185 * 60.00084 * 3 2 1 35 35 H 1.09005 * 109.87757 * 300.44026 * 7 6 4 36 36 H 1.08997 * 109.88409 * 61.60107 * 7 6 4 37 37 H 0.96702 * 114.00244 * 66.47597 * 10 8 7 38 38 H 1.08998 * 109.47228 * 270.00071 * 14 13 11 39 39 H 1.09003 * 109.47481 * 30.00055 * 14 13 11 40 40 H 1.08999 * 109.46990 * 150.00201 * 14 13 11 41 41 H 1.08997 * 109.47418 * 60.00256 * 17 15 13 42 42 H 1.09000 * 109.47371 * 299.99620 * 17 15 13 43 43 H 0.96998 * 120.00333 * 179.97438 * 22 21 19 44 44 H 1.09003 * 110.36553 * 37.06414 * 27 6 4 45 45 H 1.09000 * 110.36360 * 274.74521 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.1510 -0.1048 2.2745 6 7 2.3497 -2.0189 1.1707 7 6 2.1569 -2.8951 0.0060 8 6 2.6383 -4.3050 0.4085 9 1 3.6662 -4.4686 0.0847 10 8 1.7724 -5.3072 -0.1278 11 6 2.5489 -4.2737 1.9572 12 1 1.5332 -4.4801 2.2947 13 7 3.4998 -5.2131 2.5571 14 6 4.9184 -5.1492 2.1974 15 6 3.0692 -6.1359 3.4399 16 8 1.8946 -6.1891 3.7374 17 6 4.0472 -7.1026 4.0566 18 16 3.1698 -8.2074 5.1906 19 6 4.5134 -9.1997 5.7516 20 1 5.5111 -9.0173 5.3808 21 6 4.2893 -10.2159 6.6702 22 7 3.0733 -10.4379 7.1225 23 14 5.7136 -11.2685 7.2645 24 1 6.3172 -10.6485 8.4714 25 1 5.2181 -12.6273 7.6011 26 1 6.7375 -11.3661 6.1935 27 6 2.9486 -2.8085 2.2622 28 1 -0.3633 0.5889 0.8422 29 1 -0.3633 0.4350 -0.9312 30 1 -0.3633 -1.0238 0.0889 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.1011 -2.9268 -0.2633 36 1 2.7453 -2.5285 -0.8352 37 1 1.7909 -5.3678 -1.0927 38 1 5.1046 -5.7931 1.3378 39 1 5.1838 -4.1223 1.9463 40 1 5.5224 -5.4849 3.0403 41 1 4.8088 -6.5485 4.6053 42 1 4.5211 -7.6909 3.2709 43 1 2.9167 -11.1483 7.7642 44 1 2.5411 -2.4965 3.2238 45 1 4.0333 -2.7021 2.2564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048302091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:05 Heat of formation + Delta-G solvation = -143.296689 kcal Electronic energy + Delta-G solvation = -26368.867156 eV Core-core repulsion = 22511.692430 eV Total energy + Delta-G solvation = -3857.174725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79172 -40.71935 -39.17415 -36.77770 -36.20552 -35.43014 -34.58860 -32.14768 -30.14274 -29.42385 -28.11856 -27.89637 -27.66381 -25.44346 -23.19846 -22.45811 -20.65122 -20.03728 -19.68766 -18.78353 -18.59498 -17.83740 -17.20187 -16.90316 -16.87479 -16.65566 -16.53593 -15.85796 -15.31068 -15.15930 -15.06157 -14.66614 -14.55342 -14.42454 -14.20934 -13.79773 -13.66961 -13.61503 -13.38790 -13.26605 -13.16152 -13.12728 -13.08065 -12.89080 -12.88769 -12.60880 -12.12394 -12.05683 -11.82716 -11.69915 -11.39912 -11.14531 -10.95271 -10.80341 -10.27275 -10.01741 -9.64567 -8.68789 -8.34696 -6.13616 1.19640 1.40668 1.42756 1.47529 1.50590 1.54468 1.70479 2.10887 2.26981 2.98057 2.99462 3.20131 3.26524 3.47225 3.62159 3.70172 3.88946 3.92264 4.02946 4.06796 4.13163 4.20471 4.27812 4.36964 4.44425 4.52381 4.56925 4.67064 4.69102 4.74354 4.79234 4.82501 4.88619 4.92311 4.95502 5.07474 5.25553 5.31735 5.41513 5.44708 6.15524 6.19946 6.32298 6.88090 7.00804 7.06104 7.07113 8.74648 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.002291 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.718919 B =12218.397458 C =12365.492478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C -0.136 4.136 4 C 0.526 3.474 5 O -0.586 6.586 6 N -0.615 5.615 7 C 0.074 3.926 8 C 0.094 3.906 9 H 0.111 0.889 10 O -0.570 6.570 11 C 0.131 3.869 12 H 0.081 0.919 13 N -0.599 5.599 14 C 0.062 3.938 15 C 0.533 3.467 16 O -0.565 6.565 17 C -0.120 4.120 18 S -0.158 6.158 19 C -0.543 4.543 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.255 1.255 27 C 0.102 3.898 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.124 0.876 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.403 0.597 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.056 0.944 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 20.273 -24.823 32.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.193 4.193 4 C 0.316 3.684 5 O -0.466 6.466 6 N -0.350 5.350 7 C -0.049 4.049 8 C 0.033 3.967 9 H 0.129 0.871 10 O -0.379 6.379 11 C 0.025 3.975 12 H 0.099 0.901 13 N -0.332 5.332 14 C -0.079 4.079 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.271 4.271 18 S 0.069 5.931 19 C -0.691 4.691 20 H 0.103 0.897 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.179 1.179 27 C -0.022 4.022 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.255 0.745 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.335 20.397 -23.132 30.928 hybrid contribution 1.659 -0.715 0.277 1.828 sum 3.994 19.682 -22.855 30.424 Atomic orbital electron populations 1.21760 0.91854 1.02488 1.03752 1.21364 0.98276 0.97706 0.94905 1.21698 1.01158 0.93490 1.03002 1.21330 0.75836 0.79971 0.91216 1.90702 1.55458 1.66402 1.34012 1.48401 1.62440 1.08850 1.15299 1.23048 1.03959 0.88898 0.88998 1.23137 0.95393 0.86782 0.91357 0.87139 1.86677 1.66229 1.56644 1.28326 1.22027 0.94352 0.87538 0.93544 0.90084 1.47573 1.10218 1.32281 1.43143 1.22223 0.78054 1.04813 1.02812 1.20253 0.88324 0.80888 0.78392 1.90689 1.19845 1.71855 1.61858 1.23354 1.01307 0.99644 1.02746 1.85687 1.16309 1.38258 1.52866 1.23185 0.95296 1.19962 1.30625 0.89662 1.26174 0.99671 0.98126 0.95389 1.70191 1.22611 1.31726 1.30368 0.84924 0.77271 0.76769 0.78826 1.19370 1.20391 1.17914 1.22377 0.99777 0.88553 0.91527 0.93645 0.88392 0.92425 0.85832 0.92575 0.88914 0.93705 0.89244 0.86081 0.74537 0.90094 0.88025 0.89998 0.87041 0.87026 0.92026 0.92550 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 71.98 0.66 -0.88 16 2 C -0.10 -1.18 2.88 -11.54 -0.03 -1.21 16 3 C -0.14 -1.58 8.85 71.98 0.64 -0.94 16 4 C 0.53 10.99 6.84 87.66 0.60 11.59 16 5 O -0.59 -18.23 16.50 -3.04 -0.05 -18.28 16 6 N -0.62 -10.97 3.33 -811.81 -2.70 -13.67 16 7 C 0.07 0.71 5.93 86.73 0.51 1.23 16 8 C 0.09 1.32 3.89 31.78 0.12 1.44 16 9 H 0.11 0.92 7.06 -2.39 -0.02 0.91 16 10 O -0.57 -9.76 13.39 -148.98 -1.99 -11.76 16 11 C 0.13 3.19 3.18 46.38 0.15 3.34 16 12 H 0.08 2.75 7.01 -2.38 -0.02 2.73 16 13 N -0.60 -15.89 2.91 -814.83 -2.37 -18.26 16 14 C 0.06 0.97 8.93 127.77 1.14 2.11 16 15 C 0.53 20.75 7.69 87.66 0.67 21.42 16 16 O -0.56 -27.90 15.24 -3.03 -0.05 -27.95 16 17 C -0.12 -4.81 4.71 71.24 0.34 -4.47 16 18 S -0.16 -8.98 20.57 -56.49 -1.16 -10.14 16 19 C -0.54 -31.10 9.50 67.96 0.65 -30.46 16 20 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 21 C 0.01 0.63 5.49 84.86 0.47 1.09 16 22 N -0.91 -56.74 13.22 21.65 0.29 -56.45 16 23 Si 1.00 43.68 29.55 68.60 2.03 45.70 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 27 C 0.10 2.23 6.50 86.85 0.56 2.79 16 28 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.53 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.12 0.58 6.97 -2.39 -0.02 0.57 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.04 0.74 7.86 -2.38 -0.02 0.73 16 35 H 0.09 0.82 8.06 -2.38 -0.02 0.80 16 36 H 0.12 0.20 7.72 -2.39 -0.02 0.19 16 37 H 0.40 2.12 9.12 -74.06 -0.68 1.44 16 38 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 39 H 0.10 0.97 6.30 -2.39 -0.02 0.96 16 40 H 0.08 1.34 6.44 -2.39 -0.02 1.32 16 41 H 0.11 4.00 7.40 -2.40 -0.02 3.98 16 42 H 0.11 4.00 8.11 -2.40 -0.02 3.98 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.06 1.63 7.99 -2.39 -0.02 1.61 16 45 H 0.10 1.71 6.28 -2.39 -0.01 1.69 16 Total: -1.00 -91.74 380.82 0.79 -90.95 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.33 Total: 12.80 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 6.48 Total: 7.06 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -4.78 Total: -88.39 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -2.09 Total: -57.98 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.16 Total: -10.14 kcal Total: -91.74 0.79 -90.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048302091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.348 kcal (2) G-P(sol) polarization free energy of solvation -91.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds