Wall clock time and date at job start Tue Mar 31 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.46827 * 2 1 4 4 C 1.50696 * 109.46721 * 119.99684 * 2 1 3 5 5 O 1.21284 * 119.99874 * 114.24585 * 4 2 1 6 6 N 1.34778 * 120.00242 * 294.23868 * 4 2 1 7 7 C 1.46775 * 125.33940 * 174.36649 * 6 4 2 8 8 C 1.53963 * 106.62756 * 198.51956 * 7 6 4 9 9 H 1.09004 * 113.01142 * 94.28157 * 8 7 6 10 10 C 1.53939 * 109.91756 * 221.55542 * 8 7 6 11 11 N 1.47615 * 106.27638 * 80.85650 * 10 8 7 12 12 C 1.36941 * 125.43595 * 198.68636 * 11 10 8 13 13 H 1.07992 * 119.99945 * 180.83922 * 12 11 10 14 14 C 1.38808 * 120.00097 * 0.83749 * 12 11 10 15 15 N 1.31620 * 120.00121 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00271 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46786 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47289 * 119.99561 * 16 14 12 19 19 H 1.48496 * 109.47380 * 240.00206 * 16 14 12 20 20 C 1.46633 * 109.23093 * 19.40792 * 11 10 8 21 21 C 1.53698 * 108.00649 * 358.47816 * 20 11 10 22 22 H 1.08998 * 113.05300 * 106.19604 * 21 20 11 23 23 C 1.46665 * 125.33746 * 354.37009 * 6 4 2 24 24 S 1.81394 * 109.46882 * 239.99810 * 2 1 3 25 25 C 1.81398 * 101.92209 * 60.00130 * 24 2 1 26 26 O 1.42103 * 108.57423 * 174.48967 * 24 2 1 27 27 O 1.42094 * 108.58191 * 305.51095 * 24 2 1 28 28 H 1.09001 * 109.47103 * 303.95654 * 1 2 3 29 29 H 1.08998 * 109.46908 * 63.95643 * 1 2 3 30 30 H 1.08999 * 109.46871 * 183.95517 * 1 2 3 31 31 H 1.08996 * 109.46903 * 164.46110 * 3 2 1 32 32 H 1.09001 * 109.47069 * 284.45378 * 3 2 1 33 33 H 1.09000 * 109.47586 * 44.45475 * 3 2 1 34 34 H 1.08997 * 110.02649 * 79.22429 * 7 6 4 35 35 H 1.09002 * 110.02530 * 317.81577 * 7 6 4 36 36 H 1.09003 * 110.00525 * 201.20162 * 10 8 7 37 37 H 1.08992 * 110.00650 * 322.57268 * 10 8 7 38 38 H 0.97001 * 120.00102 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.76679 * 238.83843 * 20 11 10 40 40 H 1.08997 * 109.76252 * 118.11676 * 20 11 10 41 41 H 1.09004 * 109.77372 * 59.83166 * 23 6 4 42 42 H 1.08999 * 109.77426 * 299.07546 * 23 6 4 43 43 H 1.09003 * 109.47434 * 60.00156 * 25 24 2 44 44 H 1.09006 * 109.47178 * 179.97438 * 25 24 2 45 45 H 1.08999 * 109.47117 * 299.99692 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.6411 -1.7537 1.1223 6 7 1.8052 -0.1861 2.4512 7 6 2.1355 -0.8317 3.7273 8 6 1.2993 -0.1235 4.8088 9 1 0.3574 -0.6303 5.0190 10 6 2.1548 0.1033 6.0683 11 7 2.9661 1.3083 5.8058 12 6 4.1033 1.6625 6.4817 13 1 4.6224 2.5739 6.2247 14 6 4.5888 0.8500 7.4970 15 7 3.9558 -0.2607 7.8106 16 14 6.1395 1.3334 8.4194 17 1 6.6558 2.6174 7.8807 18 1 5.8279 1.4923 9.8626 19 1 7.1673 0.2754 8.2484 20 6 2.3525 2.0762 4.7178 21 6 1.1108 1.3089 4.2362 22 1 0.1751 1.7695 4.5527 23 6 1.1890 1.1189 2.7127 24 16 2.1347 -0.8552 -1.4811 25 6 1.4229 0.1514 -2.8118 26 8 3.5497 -0.7331 -1.5283 27 8 1.5480 -2.1485 -1.5284 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4512 -0.9233 30 1 -0.3633 -1.0252 0.0709 31 1 3.0946 1.4551 0.2753 32 1 1.9193 1.8706 -0.9951 33 1 1.4696 2.0296 0.7197 34 1 3.1980 -0.7148 3.9407 35 1 1.8765 -1.8898 3.6884 36 1 1.5106 0.2456 6.9360 37 1 2.8150 -0.7488 6.2291 38 1 4.2949 -0.8282 8.5204 39 1 3.0612 2.1828 3.8965 40 1 2.0591 3.0608 5.0815 41 1 0.1863 1.1454 2.2859 42 1 1.7980 1.9089 2.2733 43 1 1.7895 1.1746 -2.7292 44 1 1.7160 -0.2623 -3.7768 45 1 0.3361 0.1470 -2.7291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049093219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:29 Heat of formation + Delta-G solvation = -53.690685 kcal Electronic energy + Delta-G solvation = -28220.030971 eV Core-core repulsion = 24366.741853 eV Total energy + Delta-G solvation = -3853.289118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.68596 -38.53970 -37.14109 -36.14219 -35.72045 -34.80950 -32.25587 -30.29397 -29.81076 -29.66124 -27.97109 -25.90183 -25.60165 -24.24974 -22.50532 -20.21642 -20.14446 -19.47311 -18.68575 -17.36142 -16.96718 -16.65856 -16.19632 -16.06581 -15.85065 -15.09304 -14.88095 -14.77519 -14.14973 -13.92027 -13.81497 -13.75670 -13.41649 -13.25009 -12.96919 -12.56577 -12.52721 -12.34907 -12.14343 -12.10397 -12.05928 -11.97994 -11.81183 -11.58338 -11.49352 -11.20604 -11.00180 -10.86049 -10.63605 -10.38802 -10.14474 -10.09305 -9.90861 -9.87718 -9.66625 -8.68803 -8.50533 -6.90390 -5.73561 -3.12853 -0.31181 2.42829 2.48837 2.83744 3.37970 3.43628 3.46086 3.59120 3.71352 4.05937 4.16768 4.30506 4.43125 4.44941 4.66930 4.68458 4.85988 4.89084 4.98741 5.02186 5.14167 5.23154 5.31110 5.35505 5.45535 5.50488 5.64515 5.67600 5.72537 5.77545 5.81865 6.08352 6.23535 6.30538 6.38166 6.56718 6.65588 6.72935 7.34752 7.52318 7.57119 7.76212 7.98737 8.25920 9.15314 9.76699 10.39027 11.33088 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.003293 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.478929 B = 8500.180221 C = 8770.940511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.573 4.573 3 C -0.151 4.151 4 C 0.560 3.440 5 O -0.532 6.532 6 N -0.592 5.592 7 C 0.118 3.882 8 C -0.121 4.121 9 H 0.087 0.913 10 C 0.168 3.832 11 N -0.601 5.601 12 C -0.227 4.227 13 H 0.078 0.922 14 C -0.008 4.008 15 N -0.921 5.921 16 Si 0.914 3.086 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.290 1.290 20 C 0.144 3.856 21 C -0.110 4.110 22 H 0.096 0.904 23 C 0.098 3.902 24 S 2.454 3.546 25 C -0.666 4.666 26 O -0.921 6.921 27 O -0.919 6.919 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.023 0.977 37 H 0.100 0.900 38 H 0.253 0.747 39 H 0.024 0.976 40 H 0.022 0.978 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.048 5.141 -18.697 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.662 4.662 3 C -0.208 4.208 4 C 0.346 3.654 5 O -0.409 6.409 6 N -0.324 5.324 7 C -0.004 4.004 8 C -0.141 4.141 9 H 0.105 0.895 10 C 0.043 3.957 11 N -0.327 5.327 12 C -0.355 4.355 13 H 0.096 0.904 14 C -0.204 4.204 15 N -0.569 5.569 16 Si 0.745 3.255 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.216 1.216 20 C 0.018 3.982 21 C -0.130 4.130 22 H 0.115 0.885 23 C -0.025 4.025 24 S 2.630 3.370 25 C -0.815 4.815 26 O -0.918 6.918 27 O -0.916 6.916 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.031 3.748 -18.684 22.019 hybrid contribution 0.145 1.142 0.645 1.319 sum -10.886 4.889 -18.040 21.629 Atomic orbital electron populations 1.21883 0.87847 1.05210 1.05000 1.30442 1.08246 1.10701 1.16856 1.22107 1.03949 0.90144 1.04610 1.18628 0.79789 0.84396 0.82628 1.90856 1.41080 1.23473 1.85534 1.48031 1.59567 1.19465 1.05293 1.22136 1.01271 0.96728 0.80223 1.23258 0.99199 0.93868 0.97814 0.89479 1.21578 0.92134 0.92585 0.89393 1.44428 1.27163 1.23009 1.38146 1.19083 0.99373 1.05244 1.11769 0.90370 1.24785 0.99322 0.97165 0.99108 1.69841 1.40215 1.13954 1.32915 0.86007 0.82511 0.77601 0.79407 1.20535 1.21740 1.21645 1.21182 0.91278 0.94022 0.91762 1.22806 1.00046 0.97762 0.92360 0.88548 1.22437 0.97550 0.85273 0.97247 1.07449 0.76068 0.76356 0.77145 1.30476 1.14299 1.16996 1.19685 1.93585 1.26498 1.86509 1.85175 1.93570 1.79373 1.33563 1.85141 0.89186 0.90283 0.89865 0.89689 0.90638 0.88522 0.89774 0.91096 0.95926 0.88202 0.93648 0.95784 0.96017 0.91328 0.90254 0.84972 0.84895 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.10 37.16 0.30 -0.72 16 2 C -0.57 -6.11 0.59 -91.77 -0.05 -6.17 16 3 C -0.15 -1.20 7.47 37.16 0.28 -0.92 16 4 C 0.56 8.96 6.53 -10.99 -0.07 8.89 16 5 O -0.53 -10.89 15.95 2.10 0.03 -10.86 16 6 N -0.59 -9.11 3.31 -172.29 -0.57 -9.68 16 7 C 0.12 2.12 6.12 -3.39 -0.02 2.10 16 8 C -0.12 -2.07 4.12 -88.35 -0.36 -2.44 16 9 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 10 C 0.17 3.81 4.94 -2.94 -0.01 3.79 16 11 N -0.60 -14.52 3.39 -171.23 -0.58 -15.10 16 12 C -0.23 -6.12 10.25 -15.06 -0.15 -6.27 16 13 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 14 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 15 N -0.92 -26.21 10.15 55.49 0.56 -25.64 16 16 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 C 0.14 2.72 6.60 -3.61 -0.02 2.69 16 21 C -0.11 -1.63 4.01 -88.60 -0.36 -1.98 16 22 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 23 C 0.10 1.18 4.42 -3.57 -0.02 1.16 16 24 S 2.45 28.77 3.66 -107.50 -0.39 28.38 16 25 C -0.67 -3.50 9.75 101.05 0.98 -2.51 16 26 O -0.92 -14.51 17.94 -58.12 -1.04 -15.55 16 27 O -0.92 -14.05 17.72 -60.91 -1.08 -15.13 16 28 H 0.09 0.57 5.23 -51.93 -0.27 0.30 16 29 H 0.08 0.26 6.37 -51.93 -0.33 -0.07 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 32 H 0.07 0.31 5.98 -51.93 -0.31 0.00 16 33 H 0.10 0.63 4.95 -51.93 -0.26 0.37 16 34 H 0.08 1.81 7.75 -51.93 -0.40 1.41 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 2.59 5.98 -51.93 -0.31 2.28 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.02 0.46 7.29 -51.93 -0.38 0.08 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.61 5.52 -51.93 -0.29 0.32 16 42 H 0.08 0.87 5.06 -51.93 -0.26 0.60 16 43 H 0.13 0.40 6.54 -51.92 -0.34 0.06 16 44 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 45 H 0.13 0.37 6.77 -51.92 -0.35 0.02 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -37.44 349.99 -8.85 -46.29 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.42 Total: -2.12 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 0.39 Total: -2.68 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.59 Total: -50.43 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -2.09 Total: -41.55 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 28.77 SS G_CDS: -0.39 Total: 28.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.44 -8.85 -46.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049093219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.401 kcal (2) G-P(sol) polarization free energy of solvation -37.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds